Carbon implications of forest restitution in post-socialist Romania

The collapse of socialism in 1989 triggered a phase of institutional restructuring in Central and Eastern Europe. Several countries chose to privatize forests or to return them to pre-socialist owners. Here, we assess the implications of forest restitution on the terrestrial The collapse of socialism in 1989 triggered a phase of institutional restructuring in Central and Eastern Europe. Several countries chose to privatize forests or to return them to pre-socialist owners. Here, we assess the implications of forest restitution on the terrestrial carbon balance. New forest owners have strong incentives to immediately clearcut their forests, resulting in increased terrestrial emissions. On the other hand, logging generally decreased after 1989 and forests are expanding on unused or abandoned farmland, both of which may offset increased logging on restituted forests. We mapped changes in forest cover for the entire country of Romania using Landsat satellite images from 1990 to 2010. We use our satellite estimates, together with historic data on logging rates and changes in forest cover, to parameterize a carbon book-keeping model for estimating the terrestrial carbon flux (above and below ground) as a consequence of land use change and forest harvest. High logging rates during socialism resulted in substantial terrestrial carbon emissions and Romania was a net carbon source until the 1980s. After the collapse of the Soviet Union forest harvest rates decreased dramatically, but since restitution laws were implemented they have increased by 60% (from 15 122 ± 5397 ha y − 1 in 2000 to 23 884 ± 11 510 ha y − 1 in 2010), but still remain lower than prior to 1989. Romania currently remains a terrestrial carbon sink, offsetting 7.6% ± 2.5% of anthropogenic carbon emissions. A further increase in logging could result in net emissions from terrestrial ecosystems during the coming decades. However, forest expansion on degraded land and abandoned farmland offers great potential for carbon sequestration. decreased after 1989 and forests are expanding on unused or abandoned farmland, both of which may offset increased logging on restituted forests. We mapped changes in forest cover for the entire country of Romania using Landsat satellite images from 1990 to 2010. We use our satellite estimates, together with historic data on logging rates and changes in forest cover, to parameterize a carbon book-keeping model for estimating the terrestrial carbon flux (above and below ground) as a consequence of land use change and forest harvest. High logging rates during socialism resulted in substantial terrestrial carbon emissions and Romania was a net carbon source until the 1980s. After the collapse of the Soviet Union forest harvest rates decreased dramatically, but since restitution laws were implemented they have increased by 60% (from 15 122 ± 5397 ha y − 1 in 2000 to 23 884 ± 11 510 ha y − 1 in 2010), but still remain lower than prior to 1989. Romania currently remains a terrestrial carbon sink, offsetting 7.6% ± 2.5% of anthropogenic carbon emissions. A further increase in logging could result in net emissions from terrestrial ecosystems during the coming decades. However, forest expansion on degraded land and abandoned farmland offers great potential for carbon sequestration.Peer Reviewe

A Single Nucleotide Change Affects Fur-Dependent Regulation of sodB in H. pylori

Helicobacter pylori is a significant human pathogen that has adapted to survive the many stresses found within the gastric environment. Superoxide Dismutase (SodB) is an important factor that helps H. pylori combat oxidative stress. sodB was previously shown to be repressed by the Ferric Uptake Regulator (Fur) in the absence of iron (apo-Fur regulation) [1]. Herein, we show that apo regulation is not fully conserved among all strains of H. pylori. apo-Fur dependent changes in sodB expression are not observed under iron deplete conditions in H. pylori strains G27, HPAG1, or J99. However, Fur regulation of pfr and amiE occurs as expected. Comparative analysis of the Fur coding sequence between G27 and 26695 revealed a single amino acid difference, which was not responsible for the altered sodB regulation. Comparison of the sodB promoters from G27 and 26695 also revealed a single nucleotide difference within the predicted Fur binding site. Alteration of this nucleotide in G27 to that of 26695 restored apo-Fur dependent sodB regulation, indicating that a single base difference is at least partially responsible for the difference in sodB regulation observed among these H. pylori strains. Fur binding studies revealed that alteration of this single nucleotide in G27 increased the affinity of Fur for the sodB promoter. Additionally, the single base change in G27 enabled the sodB promoter to bind to apo-Fur with affinities similar to the 26695 sodB promoter. Taken together these data indicate that this nucleotide residue is important for direct apo-Fur binding to the sodB promoter

Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir

Ancient DNA and RNA are valuable data sources for a wide range of disciplines. Within the field of ancient metagenomics, the number of published genetic datasets has risen dramatically in recent years, and tracking this data for reuse is particularly important for large-scale ecological and evolutionary studies of individual microbial taxa, microbial communities, and metagenomic assemblages. AncientMetagenomeDir (archived at https://doi.org/10.5281/zenodo.3980833) is a collection of indices of published genetic data deriving from ancient microbial samples that provides basic, standardised metadata and accession numbers to allow rapid data retrieval from online repositories. These collections are community-curated and span multiple sub-disciplines in order to ensure adequate breadth and consensus in metadata definitions, as well as longevity of the database. Internal guidelines and automated checks to facilitate compatibility with established sequence-read archives and term-ontologies ensure consistency and interoperability for future meta-analyses. This collection will also assist in standardising metadata reporting for future ancient metagenomic studies.Competing Interest StatementThe authors have declared no competing interest.Background & Summary Methods - Repository Structure - Data Acquisition - Data Validation Data Records Technical Validation Usage Note

Immunotherapy: is a minor god yet in the pantheon of treatments for lung cancer?

Immunotherapy has been studied for many years in lung cancer without significant results, making the majority of oncologists quite skeptical about its possible application for non-small cell lung cancer treatment. However, the recent knowledge about immune escape and subsequent 'cancer immunoediting' has yielded the development of new strategies of cancer immunotherapy, heralding a new era of lung cancer treatment. Cancer vaccines, including both whole-cell and peptide vaccines have been tested both in early and advanced stages of non-small cell lung cancer. New immunomodulatory agents, including anti-CTLA4, anti-PD1/PDL1 monoclonal antibodies, have been investigated as monotherapy in metastatic lung cancer. To date, these treatments have shown impressive results of efficacy and tolerability in early clinical trials, leading to testing in several large, randomized Phase III trials. As these results will be confirmed, these drugs will be available in the near future, offering new exciting therapeutic options for lung cancer treatment

Coordinated Regulation of Niche and Stem Cell Precursors by Hormonal Signaling

In the developing Drosophila ovary, the ecdysone signaling pathway controls the differentiation of both niche and germ line stem cell precursors

Built Shallow to Maintain Homeostasis and Persistent Infection: Insight into the Transcriptional Regulatory Network of the Gastric Human Pathogen Helicobacter pylori

Transcriptional regulatory networks (TRNs) transduce environmental signals into coordinated output expression of the genome. Accordingly, they are central for the adaptation of bacteria to their living environments and in host–pathogen interactions. Few attempts have been made to describe a TRN for a human pathogen, because even in model organisms, such as Escherichia coli, the analysis is hindered by the large number of transcription factors involved. In light of the paucity of regulators, the gastric human pathogen Helicobacter pylori represents a very appealing system for understanding how bacterial TRNs are wired up to support infection in the host. Herein, we review and analyze the available molecular and “-omic” data in a coherent ensemble, including protein–DNA and protein–protein interactions relevant for transcriptional control of pathogenic responses. The analysis covers ∼80% of the annotated H. pylori regulators, and provides to our knowledge the first in-depth description of a TRN for an important pathogen. The emerging picture indicates a shallow TRN, made of four main modules (origons) that process the physiological responses needed to colonize the gastric niche. Specific network motifs confer distinct transcriptional response dynamics to the TRN, while long regulatory cascades are absent. Rather than having a plethora of specialized regulators, the TRN of H. pylori appears to transduce separate environmental inputs by using different combinations of a small set of regulators

Competitive Adsorption of Mixed Anionic Polysaccharides at the Surfaces of Protein-Coated Lipid Droplets

Charged polysaccharides can improve the stability of protein-coated lipid droplets by forming a protective coating around them. Potentially, the interfacial characteristics of these coatings can be controlled by assembling them from mixed polysaccharides with different molecular characteristics. The purpose of this study was to examine the competitive adsorption of two anionic polysaccharides (carrageenan and pectin) to beta-lactoglobulin coated-lipid droplets. Carrageenan has a higher charge density than pectin, and carrageenan has a linear backbone whereas pectin has a linear backbone with branches. Emulsions (phi = 1 wt % oil, d43 = 0.40 +/- 0.03 microm) were mixed with polysaccharide solutions (0 or 0.04 wt%) at pH 7, then the pH was decreased to promote polysaccharide adsorption. The adsorption of the polysaccharide molecules to the droplet surfaces occurred at a higher pH for carrageenan (pH approximately 5.85) than for pectin (pH approximately 5.45). When polysaccharide mixtures were added at pH 7, the carrageenan molecules preferentially adsorbed to the droplet surfaces when the pH was reduced. At pH 3.5, carrageenan coated droplets had a higher negative charge (zeta = - 38.5 +/- 3.1 mV) than pectin-coated droplets (zeta = - 17.9 +/- 2.0 mV). Carrageenan was much more effective at displacing pectin from the surfaces of pectin-coated droplets, than pectin was at displacing carrageenan from carrageenan-coated droplets. The stability of pectin-coated droplets was better than carrageenan-coated droplets, which was attributed to steric hindrance effects. These results have important implications for the design of delivery systems based on polysaccharide/protein-coated droplets