Pools / Dreams / Parental Gaze

This thesis is a testimony of thoughts and ideas that have been circulating in my studio for the past few years, in their current form. It is also an experiment in writing an autobiographical piece of prose. It was written parallel to, and after, making the film Double Take with Perrin Turner. The film is an exploration of a number of relationships, related and sometimes haunted by one another. I wish for this text to operate not only as an after-the-fact recollection of thoughts, but also in relation to what will follow it – similarly to the way a trailer operates in relation to a movie. This is an extract and a prologue rather than conclusion or resolution

TOWARDS GLOBAL E-AGRICULTURE: THE CHALLENGE OF WEB-BASED DECISION SUPPORT SYSTEMS FOR GROWERS

Globalization is influencing several agriculture aspects: market globalization has increased export from producing to consuming countries where different food safety or pesticide residue regulations apply, and has raised awareness of global problems linked to agriculture production (i.e., chemical pesticide pollution). Pests, diseases and weeds may cause significant damages to growers and the cost of pesticide increases. Environmental pollution and risk of unwanted residues on food forced researchers to find ways to optimize pesticide applications. However, extension services and research in pest management is often fragmented and efforts to develop support tools for pest management are often duplicated. Furthermore, sometimes the knowledge does not spread from research centers to growers due to difficulties in knowledge transfer. Decision support systems (DSS) are widely used for assisting with integrated pest management (IPM), crop nutrition, and other aspects of information transfer. Developing highly portable and especially web-based DSSs that can be easily adapted to new environments is therefore desirable in view of agriculture globalization. Web-based models and DSSs have the major advantage of reducing software development, maintenance, and distribution costs, while making the relevant knowledge easily accessible to growers world-wide. This paper presents two examples of web-based agricultural DSSs and demonstrates the potential use of these systems in a wide application range in order to adapt to the needs of globalization. Allowing the choice of different values for the parameters renders these DSSs very flexible. Their development process integrated agricultural expertise from two distinct research centers with information systems know-how from a third center, over two countries, demonstrating the need for a global software development that crosses country borders. The results show that it is possible to satisfy the prerequisites: reducing software development cost by enlarging the number of users and reaching growers among whom specific knowledge on diseases is not yet established

A mesocosm experiment investigating the effects of substratum quality and wave exposure on the survival of fish eggs

In a mesocosm experiment, the attachment of bream (Abramis brama) eggs to spawning substrata with and without periphytic biofilm coverage and their subsequent survival with and without low-intensity wave exposure were investigated. Egg attachment was reduced by 73% on spawning substrata with a natural periphytic biofilm, compared to clean substrata. Overall, this initial difference in egg numbers persisted until hatching. The difference in egg numbers was even increased in the wave treatment, while it was reduced in the no-wave control treatment. Exposure to a low-intensity wave regime affected egg development between the two biofilm treatments differently. Waves enhanced egg survival on substrata without a biofilm but reduced the survival of eggs on substrata with biofilm coverage. In the treatment combining biofilm-covered substrata and waves, no attached eggs survived until hatching. In all treatments, more than 75% of the eggs became detached from the spawning substrata during the egg incubation period, an

Population genetic analysis of the recently rediscovered Hula painted frog (Latonia nigriventer) reveals high genetic diversity and low inbreeding

After its recent rediscovery, the Hula painted frog (Latonia nigriventer) has remained one of the world’s rarest and least understood amphibian species. Together with its apparently low dispersal capability and highly disturbed niche, the low abundance of this living fossil calls for urgent conservation measures. We used 18 newly developed microsatellite loci and four different models to calculate the effective population size (Ne) of a total of 125 Hula painted frog individuals sampled at a single location. We compare the Ne estimates to the estimates of potentially reproducing adults in this population (Nad) determined through a capture-recapture study on 118 adult Hula painted frogs captured at the same site. Surprisingly, our data suggests that, despite Nad estimates of only ~234–244 and Ne estimates of ~16.6–35.8, the species appears to maintain a very high genetic diversity (HO = 0.771) and low inbreeding coefficient (FIS = −0.018). This puzzling outcome could perhaps be explained by the hypotheses of either genetic rescue from one or more unknown Hula painted frog populations nearby or by recent admixture of genetically divergent subpopulations. Independent of which scenario is correct, the original locations of these populations still remain to be determined

Macroinvertebrate community traits and nitrate removal in stream sediments

1. In-stream nitrate removal capacity may be used as a proxy for the ecosystem service of water quality regulation. It is well known that this natural function is driven by abiotic and biotic factors in running water environments. With regard to biotic drivers, most of the literature focuses on the microbial community influences, but there has been very little emphasis on the relationship with the benthic macroinvertebrate community. Since this community feeds on microbial assemblages (autotrophic and/or heterotrophic biofilms) that live on the streambed and in the hyporheic zone of the river, macroinvertebrates also have the potential to influence nitrate removal via its influences on microbiological processes.2. The objective of this study was to examine the potential relationship between the macroinvertebrate communities and nitrate removal. A dataset of in-stream nitrate removal rates measured in nine-third-order streams was analysed. The simultaneous influences of abiotic (hydromorphological, physical and chemical characteristics) and biotic (biofilm and macroinvertebrate) drivers were examined and together explained 56% of the in-stream nitrate removal variance. An analysis of the independent contributions of each driver showed that abiotic drivers (e.g. ammonium, dissolved organic carbon, temperature and transient zone) contributed 40% of this nitrate removal variance, whereas the macroinvertebrate community contributed 39%.3. The potential relationship between macroinvertebrates and nitrate removal was subsequently explored using trait-based approaches of the macroinvertebrate community. This method allows for the selection of trait modalities assuming a top-down control of microbial communities by macroinvertebrates, with in-stream abiotic conditions correlated with nitrate removal (assuming that environmental conditions affect macroinvertebrate community composition).4. The main trait modalities positively correlated with nitrate removal were scraper (feeding habit), flagstones/boulders/cobbles/pebbles (substrate preference), crawler and interstitial (locomotion) and detritus (food). The main modalities negatively correlated with nitrate removal were silt and mud with microphytes (as substrate preference), and with fine sediment with microorganisms, and dead animals (as food sources). These results agreed with the hypothesis of top-down control and enhanced understanding of the influence of hydromorphological factors on nitrate removal.5. This study highlights the involvement of the macroinvertebrate community in in-stream nitrate processing, and demonstrates the usefulness of applying a functional approach to explain relationships between biodiversity and ecosystem function

Sandbar Breaches Control of the Biogeochemistry of a Micro-Estuary

Micro-estuaries in semi-arid areas, despite their small size (shallow depth of a few meters, length of a few kilometers, and a surface area of less than 1 km2) are important providers of ecosystem services. Despite their high abundance, tendency to suffer from eutrophication and vulnerability to other anthropogenic impacts, such systems are among the least studied water bodies in the world. In low tidal amplitude regions, micro-estuaries often have limited rate of sea-river water exchange, somewhat similar to fjord circulation, caused by a shallow sandbar forming at the coastline. The long-term study, we report here was inspired by the idea that, due to their small size and low discharges regime, relatively small interventions can have large effects on micro-estuaries. We used a stationary array of sensors and detailed monthly water sampling to characterize the Alexander estuary, a typical micro-estuary in the S.E. Mediterranean, and to identify the main stress factors in this aquatic ecosystem. The Alexander micro-estuary is stratified throughout the year with median bottom salinity of 18 PSU. Prolonged periods of hypoxia were identified as the main stress factor. Those were alleviated by breaching of the sandbar at the estuary mouth by sea-waves or stormwater runoff events (mostly during winter) that flush the anoxic bottom water. Analysis of naturally occurring sandbar breaches, and an artificial breach experiment indicate that the current oxygen consumption rate of the Alexander micro-estuary is too high to consider sandbar breaches as a remedy for the anoxia. Nevertheless, it demonstrates and provides the tools to assess the feasibility of small-scale interventions to control micro-estuaries hydrology and biogeochemistry

Defective RNA Molecules Associated with Citrus Tristeza Virus

AbstractPreparations of single-stranded (ss) RNA extracted from particles of the Israeli VT strain of citrus tristeza virus (CTV-VT), and ss- and double-stranded (ds) RNA preparations extracted from infected Alemow (Citrus macrophylla) plants, contained a population of molecules with features that suggest that they are defective RNAs. The prototype of 2424 nt was cloned and sequenced and was found to be composed of two genomic regions corresponding to the 5′ (1151 nt) and the 3′ (1259 nt) termini of the genomic CTV-RNA, with two perfect direct repeats of eight nucleotides of unknown origin at the junction site. Northern hybridization analysis demonstrated that this 2.4-kb defective RNA is an abundant species among the other CTV-specific ss- and ds-RNAs in infected plants. The 2.4-kb RNA was found encapsidated by the CTV coat protein indicating that the CTV origin of assembly is located close to the 5′ or 3′ terminus. This is the first defective RNA to be reported for a member of the closterovirus group

Fine-Scale Temporal Dynamics of a Fragmented Lotic Microbial Ecosystem

Microbial ecosystems are often assumed to be relatively stable over short periods of time, but this assumption is seldom tested. An urban stream influenced by both flow and varying levels of anthropogenic influences is expected to have high temporal variability in microbial composition, and short-term ecological instability. Thus, we analyzed the bacterioplankton composition of a weir-fragmented urban stream using Automated rRNA Intergenic Spacer Analysis (ARISA). A total of 46 sequential samples were collected in July 2009 for 7 days, every 7 hours, from both the up-stream side of the weir (stream water) and the downstream side of the weir (estuarine) water. Bray-Curtis similarity based analysis showed a clear division between upstream and downstream communities. A sudden pH drop induced change in both communities, but composition stability partially recovered within less than a day. Thus, our results show that microbial ecosystems can change rapidly, but re-establish a new equilibrium relatively quickly