Gut immune dysfunction through impaired innate pattern recognition receptor expression and gut microbiota dysbiosis in chronic SIV infection.

HIV targets the gut mucosa early in infection, causing immune and epithelial barrier dysfunction and disease progression. However, gut mucosal sensing and innate immune signaling through mucosal pattern recognition receptors (PRRs) during HIV infection and disease progression are not well defined. Using the simian immunodeficiency virus (SIV)-infected rhesus macaque model of AIDS, we found a robust increase in PRRs and inflammatory cytokine gene expression during the acute SIV infection in both peripheral blood and gut mucosa, coinciding with viral replication. PRR expression remained elevated in peripheral blood following the transition to chronic SIV infection. In contrast, massive dampening of PRR expression was detected in the gut mucosa, despite the presence of detectable viral loads. Exceptionally, expression of Toll-like receptor 4 (TLR4) and TLR8 was downmodulated and diverged from expression patterns for most other TLRs in the gut. Decreased mucosal PRR expression was associated with increased abundance of several pathogenic bacterial taxa, including Pasteurellaceae members, Aggregatibacter and Actinobacillus, and Mycoplasmataceae family. Early antiretroviral therapy led to viral suppression but only partial maintenance of gut PRRs and cytokine gene expression. In summary, SIV infection dampens mucosal innate immunity through PRR dysregulation and may promote immune activation, gut microbiota changes, and ineffective viral clearance

Um software para extração de ESTs, CONTIGS e SINGLETS do CAFEST.

Uma das dificuldades encontrada atualmente para os usuários da base de dados do Projeto Brasileiro do Genoma Café (CafEST) é a dificuldade em extrair manualmente todas as sequências armazenadas em seus projetos, no sistema Gene Projects. A partir dessa necessidade, foi desenvolvido um software para fazer a automatização do processo. Desta forma, o usuário do CafEST passa a dispor da comodidade de apenas informar ao programa quais projetos ele deseja que tenham as ESTs, contigs ou singlets extraídos. O programa consiste em dois scripts, um para fazer a extração das ESTs e outro para fazer a extração dos contigs e dos singlets. Os dois scripts retiram do CafEST apenas as ESTs, os contigs e singlets e salvam cada um desses em um arquivo do tipo FASTA. Isto facilita o uso dos mesmos em outras bases de dados e/ou ferramentas de bioinformátic

Processes controlling atmospheric dispersion through city centres

We develop a process-based model for the dispersion of a passive scalar in the turbulent flow around the buildings of a city centre. The street network model is based on dividing the airspace of the streets and intersections into boxes, within which the turbulence renders the air well mixed. Mean flow advection through the network of street and intersection boxes then mediates further lateral dispersion. At the same time turbulent mixing in the vertical detrains scalar from the streets and intersections into the turbulent boundary layer above the buildings. When the geometry is regular, the street network model has an analytical solution that describes the variation in concentration in a near-field downwind of a single source, where the majority of scalar lies below roof level. The power of the analytical solution is that it demonstrates how the concentration is determined by only three parameters. The plume direction parameter describes the branching of scalar at the street intersections and hence determines the direction of the plume centreline, which may be very different from the above-roof wind direction. The transmission parameter determines the distance travelled before the majority of scalar is detrained into the atmospheric boundary layer above roof level and conventional atmospheric turbulence takes over as the dominant mixing process. Finally, a normalised source strength multiplies this pattern of concentration. This analytical solution converges to a Gaussian plume after a large number of intersections have been traversed, providing theoretical justification for previous studies that have developed empirical fits to Gaussian plume models. The analytical solution is shown to compare well with very high-resolution simulations and with wind tunnel experiments, although re-entrainment of scalar previously detrained into the boundary layer above roofs, which is not accounted for in the analytical solution, is shown to become an important process further downwind from the source

Interaction between Telenomus remus and Trichogramma pretiosum in the management of Spodoptera spp.

ABSTRACT: Interaction betweeen Telenomus remus and Trichogramma pretiosum in the management of Spodoptera spp. The use of egg parasitoids is a promising strategy for Integrated Pest Management (IPM), but different species of parasitoids have greater or lesser control efficiency, depending on the pest species. Recently, not only Anticarsia gemmatalis and Pseudoplusia includens but also Spodoptera cosmioides and S. eridania have been among the key Lepidoptera larvae attacking soybeans. This study evaluated the combination of Telenomus remus and Trichogramma pretiosum for parasitism of eggs of the Spodoptera complex, for better control efficiency and broader spectrum of action among the key pests of soybeans. The experiment was carried out under controlled environmental conditions (25 ± 2ºC; 70 ± 10% RH; and 14 h photophase) in a completely randomized experimental design with seven treatments and 10 replicates with S. frugiperda, S. cosmioides and S. eridania eggs. Each replicate consisted of one egg mass of each Spodoptera species, with approximately 100 eggs offered to the parasitoids. The treatments were: 1) 10 females of T. pretiosum; 2) nine females of T. pretiosum and one female of T. remus; 3) eight females of T. pretiosum and two females of T. remus; 4) seven females of T. pretiosum and three females of T. remus; 5) six females of T. pretiosum and four females of T. remus; 6) five females of T. pretiosum and five females of T. remus, and 7) 10 females of T. remus. The parameter evaluated was the percentage of parasitized eggs. Results showed that treatments combining both parasitoid species with only 1 T. remus for each 9 T. pretiosum (10%) and only 2 T. remus for each 8 T. pretiosum (20%) were enough to significantly increase the parasitism observed on eggs of S. cosmioides and S. frugiperda, respectively. This association of T. pretiosum and T. remus in different proportions is very promising for biological control in IPM programs because it provides wide spectrum of control. RESUMO:Interação de Telenomus remus e Trichogramma pretiosum no manejo de Spodoptera spp. O uso de parasitóides de ovos é uma estratégia promissora dentro do manejo integrado de pragas (MIP), mas diferentes espécies de parasitóides têm maior ou menor eficiência dependendo da espécie praga. Recentemente, não apenas Anticarsia gemmatalis e Pseudoplusia includens, mas também Spodoptera cosmioides e S. eridania estão entre as principais larvas de Lepidoptera que estão atacando a cultura da soja. Assim, este trabalho avaliou a possibilidade do uso associado de Telenomus remus e Trichogramma pretiosum no controle de ovos do complexo Spodoptera, objetivando uma maior eficiência de parasitismo com um maior espectro de ação entre as pragas-chave desta cultura. O experimento foi conduzido em condições controladas (25 ± 2ºC; 70 ± 10% e fotofase de 14 h) no delineamento inteiramente casualizado com 7 tratamentos e 10 repetições e ovos de S. frugiperda, S. cosmioides e S. eridania. Para cada repetição foi oferecida aos parasitóides uma postura de cada uma das espécies de Spodoptera, com aproximadamente 100 ovos. As diferentes proporções dos parasitóides (tratamentos) avaliadas foram: 1) dez fêmeas de T. pretiosum 2) nove fêmeas de T. pretiosum e uma fêmea de T. remus 3) oito fêmeas de T. pretiosum e duas fêmeas de T. remus 4) sete fêmeas de T. pretiosum e três fêmeas de T. remus 5) seis fêmeas de T. pretiosum e quatro fêmeas de T. remus 6) cinco fêmeas de T. pretiosum e cinco fêmeas de T. remus 7) dez fêmeas de T. remus. O parâmetro avaliado foi à porcentagem de ovos parasitados. Os resultados mostraram que tratamentos combinando ambas as espécies de parasitóides com apenas 1 T. remus para cada 9 T. pretiosum (10%) e apenas 2 T. remus para cada 8 T. pretiosum (20%) foram suficientes para aumentar significativamente o parasitismo observado em ovos de S. cosmioides e S. frugiperda, respectivamente. Esta associação de T. pretiosum e T. remus em diferentes proporções é bastante promissora para utilização em programas de controle biológico dentro do MIP visto que poderá fornecer um bom espectro de controle

Antimicrobial activity of essential oil from some Verbenaceae and Asteraceae from Brazilian Cerrado.

ISEO. PP10

The poverty of journal publishing

The article opens with a critical analysis of the dominant business model of for-profit, academic publishing, arguing that the extraordinarily high profits of the big publishers are dependent upon a double appropriation that exploits both academic labour and universities’ financial resources. Against this model, we outline four possible responses: the further development of open access repositories, a fair trade model of publishing regulation, a renaissance of the university presses, and, finally, a move away from private, for-profit publishing companies toward autonomous journal publishing by editorial boards and academic associations. </jats:p