16S rRNA sequencing reveals likely beneficial core microbes within faecal samples of the EU protected slug Geomalacus maculosus

The EU-protected slug Geomalacus maculosus Allman occurs only in the West of Ireland and in northern Spain and Portugal. We explored the microbial community found within the faeces of Irish specimens with a view to determining whether a core microbiome existed among geographically isolated slugs which could give insight into the adaptations of G. maculosus to the available food resources within its habitat. Faecal samples of 30 wild specimens were collected throughout its Irish range and the V3 region of the bacterial 16S rRNA gene was sequenced using Illumina MiSeq. To investigate the influence of diet on the microbial composition, faecal samples were taken and sequenced from six laboratory reared slugs which were raised on two different foods. We found a widely diverse microbiome dominated by Enterobacteriales with three core OTUs shared between all specimens. While the reared specimens appeared clearly separated by diet in NMDS plots, no significant difference between the slugs fed on the two different diets was found. Our results indicate that while the majority of the faecal microbiome of G. maculosus is probably dependent on the microhabitat of the individual slugs, parts of it are likely selected for by the host

Projected climate change impacts on upland heaths in Ireland

Heathland habitats in Ireland occur primarily in an oceanic setting which is strongly influenced by changes in the climate. As a consequence of the oceanic environment, Ireland has a high proportion of the northern Atlantic wet and alpine and boreal heaths of high conservation value within Europe. Future climate change is widely expected to place additional pressure on these systems. Seven bioclimatic envelope modelling techniques implemented in the BIOMOD modelling framework were used to model Wet and Alpine and Boreal heath distributions in Ireland. The 1961 to 1990 baseline models closely matched the observed distribution, and emphasise the strong dependency on climate. Mean winter precipitation, mean winter temperature and elevation were found to be important model components. The fitted models discrimination ability was assessed using the area under the curve (range 0.874 to 0.929, Wet heath; 0.858 to 0.936, Alpine and Boreal heath) of a receiver operating characteristic plot; the true skill statistic (range 0.648 to 0.713, Wet heath; 0.666 to 0.737, Alpine and Boreal heath); and Cohen’s kappa (range 0.652 to 0.714, Wet heath; 0.641 to 0.738, Alpine and Boreal heath). A BIOMOD ensemble prediction from all the models was used to project changes based on a climate change scenario for 2031 to 2060 dynamically downscaled from the Hadley Centre HadCM3-Q16 global climate model. The climate change projections for the individual models change markedly from the consistent baseline predictions. Projected climate space losses (gains) from the BIOMOD consensus model are -40.84% (limited expansion) and -10.38% (full expansion) for Wet heath; and -18.31% (limited expansion) and +28.17% (full expansion) for Alpine and Boreal heath. Although the consensus models project gains in climate space for both habitats in other parts of the country, new habitat formation in these areas is unlikely as current (and hence near future) land use and other conditions are not likely to favour expansion

Selective inhibitors of trypanosomal uridylyl transferase RET1 establish druggability of RNA post-transcriptional modifications.

Non-coding RNAs are crucial regulators for a vast array of cellular processes and have been implicated in human disease. These biological processes represent a hitherto untapped resource in our fight against disease. In this work we identify small molecule inhibitors of a non-coding RNA uridylylation pathway. The TUTase family of enzymes is important for modulating non-coding RNA pathways in both human cancer and pathogen systems. We demonstrate that this new class of drug target can be accessed with traditional drug discovery techniques. Using the Trypanosoma brucei TUTase, RET1, we identify TUTase inhibitors and lay the groundwork for the use of this new target class as a therapeutic opportunity for the under-served disease area of African Trypanosomiasis. In a broader sense this work demonstrates the therapeutic potential for targeting RNA post-transcriptional modifications with small molecules in human disease.This work was supported by two grants from the European Research Council (RG58558, RG67639) and a grant from Cancer Research UK (RG51661) to E.A.MThis is the author accepted manuscript. The final version is available from [publisher] via http://dx.doi.org/10.1080/15476286.2015.113742

Diagnostic definitions and figures of male and female Tetanocera punctifrons and T. latifibula, new records of T. punctifrons in Ireland, and notes on biology (Diptera: Sciomyzidae).

The presence of Tetanocera punctifrons Rondani, 1868 in Ireland is reconfirmed. The species is distinguished from the very similar T. latifibula Frey, 1924. The female abdomens of both species are described for the first time. The distributions of both species are summarised. The history of type examinations and of taxonomists’ conceptions of the two species is tracked, especially the relative reliability of published figures of diagnostic features. We emphasise the need for such analyses of rare and closely related species, even if apparently disjunct in distribution. Habitats of T. punctifrons and T. latifibula are described, and the biology and morphology of the immature stages are compared

Assessment of the Biological Control Potential of Common Carabid Beetle Species for Autumn- and Winter-Active Pests (Gastropoda, Lepidoptera, Diptera: Tipulidae) in Annual Ryegrass in Western Oregon.

While carabid beetles have been shown to feed on a variety of crop pests, little is known about their species assemblages in US annual ryegrass crops, where invertebrate pests, particularly slugs, lepidopteran larvae and craneflies, incur major financial costs. This study assesses the biological control potential of carabid beetles for autumn- and winter-active pests in annual ryegrass grown for seed by: (a) investigating the spatial and temporal overlap of carabids with key pests; and (b) molecular gut content analysis using qPCR. Introduced Nebria brevicollis was the only common carabid that was active during pest emergence in autumn, with 18.6% and 8.3% of N. brevicollis collected between September and October testing positive for lepidopteran and cranefly DNA, respectively, but only 1.7% testing positive for slug DNA. While pest DNA was also detected in the guts of the other common carabid species-Agonum muelleri, Calosoma cancellatum and Poecilus laetulus-these were active only during spring and summer, when crop damage by pests is less critical. None of the four carabid species was affected by disk tilling and only N. brevicollis was significantly associated with a vegetated field margin. However, as its impact on native ecosystems is unknown, we do not recommend managing for this species

Tolerance to extreme hot and cold temperatures in the EU-protected terrestrial slug Geomalacus maculosus

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Nematode associates and susceptibility of a protected slug (Geomalacus maculosus) to four biocontrol nematodes

The impact of selected entomopathogenic nematodes and Phasmarhabditis hermaphrodita on the European-Union-protected slug Geomalacus maculosus and the sympatric Lehmannia marginata was investigated. There was no significant difference in mortality between slugs treated with nematodes and their controls. The presence of P. hermaphrodita in two G. maculosus cadavers may be the result of necromenic behaviour. This study constitutes the first record of P. californica in Europe

Exploratory randomised controlled trial of a mindfulness-based weight loss intervention for women

To explore the efficacy of a mindfulness-based weight loss intervention for women. Sixty-two women (ages 19-64; BMI 22.5-52.1) who were attempting to lose weight were randomised to an intervention or control condition. The former were invited to attend four 2-h workshops, the latter were asked to continue with their normal diets. Data were collected at baseline, 4 and 6 months. BMI, physical activity, mental health. At 6 months intervention participants showed significantly greater increases in physical activity compared to controls (p<.05) but no significant differences in weight loss or mental health. However, when intervention participants who reported 'never' applying the workshop principles at 6 months (n=7) were excluded, results showed both significantly greater increases in physical activity (3.1 sessions per week relative to controls, p<.05) and significantly greater reductions in BMI (0.96 relative to controls, equivalent to 2.32 kg, p<0.5). Reductions in BMI were mediated primarily by reductions in binge eating. Despite its brevity, the intervention was successful at bringing about change. Further refinements should increase its efficacy

Circulating Cell-Free DNA in Dogs with Mammary Tumors: Short and Long Fragments and Integrity Index

Circulating cell-free DNA (cfDNA) has been considered an interesting diagnostic/prognostic plasma biomarker in tumor-bearing subjects. In cancer patients, cfDNA can hypothetically derive from tumor necrosis/apoptosis, lysed circulating cells, and some yet unrevealed mechanisms of active release. This study aimed to preliminarily analyze cfDNA in dogs with canine mammary tumors (CMTs). Forty-four neoplastic, 17 non-neoplastic disease-bearing, and 15 healthy dogs were recruited. Necrosis and apoptosis were also assessed as potential source of cfDNA on 78 CMTs diagnosed from the 44 dogs. The cfDNA fragments and integrity index significantly differentiated neoplastic versus non-neoplastic dogs (P<0.05), and allowed the distinction between benign and malignant lesions (P<0.05). Even if without statistical significance, the amount of cfDNA was also affected by tumor necrosis and correlated with tumor size and apoptotic markers expression. A significant (P<0.01) increase of Bcl-2 in malignant tumors was observed, and in metastatic CMTs the evasion of apoptosis was also suggested. This study, therefore, provides evidence that cfDNA could be a diagnostic marker in dogs carrying mammary nodules suggesting that its potential application in early diagnostic procedures should be further investigated