The evolution of tree nursery offerings in Los Angeles County over the last 110 years

Interest in urban vegetation has increased dramatically. Urban trees are an important aspect of the urban environment but there is little known about the potential sources of those trees, change in tree species diversity over time and the factors leading to the contemporary floristic composition in cities. We investigate tree nursery offerings in Los Angeles County over the past 110 years through the use of here-to-fore unexplored nursery catalogs to determine the diversity of trees that have been commercially available over time. Tree species information was collected spanning a 110-year study period and analyzed the data for four time periods (1900-1929, 1930-1959, 1960-1989, and 1990-2011). We found the number of genera and tree species offered significantly increased in the past 20 years (1990-2011). The numbers of non-native trees, angiosperms, and deciduous species all significantly increased with but no changes were observed in the numbers of native, evergreen, or gymnosperm species offered over this time period. The largest numbers of palm species were offered in 1900-1929. Overall there were 562 unique species offered belonging to 201 different genera in the 120-year study period, 48 species were California native trees and 514 of these were non-native species indicating that perhaps Los Angeles has one of the most diverse number of tree species offered for sale by the nursery industry. © 2013 Elsevier B.V

Threats of future climate change and land use to vulnerable tree species native to Southern California

Climate and land-use changes are expected to drive high rates of environmental change and biodiversity loss in Mediterranean ecosystems this century. This paper compares the relative future impacts of land use and climate change on two vulnerable tree species native to Southern California (Juglans californica and Quercus engelmannii) using species distribution models. Under the Intergovernmental Panel for Climate Change's A1B future scenario, high levels of both projected land use and climate change could drive considerable habitat losses on these two already heavily-impacted tree species. Under scenarios of no dispersal, projected climate change poses a greater habitat loss threat relative to projected land use for both species. Assuming unlimited dispersal, climate-driven habitat gains could offset some of the losses due to both drivers, especially in J. californica which could experience net habitat gains under combined impacts of both climate change and land use. Quercus engelmannii, in contrast, could experience net habitat losses under combined impacts, even under best-case unlimited dispersal scenarios. Similarly, projected losses and gains in protected habitat are highly sensitive to dispersal scenario, with anywhere from > 60% loss in protected habitat (no dispersal) to > 170% gain in protected habitat (unlimited dispersal). The findings underscore the importance of dispersal in moderating future habitat loss for vulnerable species

Understanding preferences for tree attributes: the relative effects of socio-economic and local environmental factors

Urban plant biodiversity is influenced by both the physical environment and attitudes and preferences of urban residents for specific plant types. Urban residents are assumed to be disconnected from their immediate environment, and cultural and societal factors have been emphasized over environmental factors in studies of landscaping choices. However, we postulate that local climatic and environmental factors can also affect preferences for plant attributes. Therefore, spatial and temporal patterns in urban tree biodiversity may be driven not only by the direct effect of environmental variables on plant function, but also by the effect of environmental variables on attitudes toward trees and associated choices about which types of trees to plant. Here, we tested the relative effects of socio-economic and local environmental factors on preferences toward tree attributes in five counties in southern California in and surrounding Los Angeles, based on 1,029 household surveys. We found that local environmental factors have as strong an effect on preferences for tree attributes as socio-economic factors. Specifically, people located in hotter climates (average maximum temperature 25.1 °C) were more likely to value shade trees than those located in cooler regions (23.1 °C). Additionally, people located in desert areas were less likely to consider trees to be important in their city compared with people located in naturally forested areas. Overall, our research demonstrates the inherent connections between local environmental factors and perceptions of nature, even in large modern cities. Accounting for these factors can contribute to the growing interest in understanding patterns of urban biodiversity

MIER1 (mesoderm induction early response 1 homolog (Xenopus laevis))

Review on MIER1 (mesoderm induction early response 1 homolog (Xenopus laevis)), with data on DNA, on the protein encoded, and where the gene is implicated

Climate tolerances and trait choices shape continental patterns of urban tree biodiversity

Aim: We propose and test a climate tolerance and trait choice hypothesis of urban macroecological variation in which strong filtering associated with low winter temperatures restricts urban biodiversity while weak filtering associated with warmer temperatures and irrigation allows dispersal of species from a global source pool, thereby increasing urban biodiversity. Location: Twenty cities across the USA and Canada. Methods: We examined variation in tree community taxonomic diversity, origins and production of an aesthetic ecosystem service trait in a cross-section of urban field surveys. We correlated urban tree community composition indicators with a key climate restriction, namely mean minimum winter temperature, and evaluated alternative possible drivers: precipitation, summer maximum temperature, population size and the percentage of adults with a college education. Results: Species accumulation curves differed substantially among cities, with observed richness varying from 22 to 122 species. Similarities in tree communities decreased exponentially with increases in climatic differences. Ordination of tree communities showed strong separation among cities with component axes correlated with minimum winter temperature and annual precipitation. Variation among urban tree communities in richness, origins and the provisioning of an aesthetic ecosystem service were all correlated with minimum winter temperature. Main conclusions: The urban climate tolerance and trait choice hypothesis provides a coherent mechanism to explain the large variation among urban tree communities resulting from an interacting environment, species and human decisions. Reconciling the feedbacks between human decision making and biophysical limitations provides a foundation for an urban ecological theory that can better understand and predict the dynamics of other linked biotic communities, associated ecosystem dynamics and resulting services provided to urban residents

Identification of 2-Aminothiazole-4-Carboxylate Derivatives Active against Mycobacterium tuberculosis H37Rv and the β-Ketoacyl-ACP Synthase mtFabH

Background Tuberculosis (TB) is a disease which kills two million people every year and infects approximately over one-third of the world's population. The difficulty in managing tuberculosis is the prolonged treatment duration, the emergence of drug resistance and co-infection with HIV/AIDS. Tuberculosis control requires new drugs that act at novel drug targets to help combat resistant forms of Mycobacterium tuberculosis and reduce treatment duration. Methodology/Principal Findings Our approach was to modify the naturally occurring and synthetically challenging antibiotic thiolactomycin (TLM) to the more tractable 2-aminothiazole-4-carboxylate scaffold to generate compounds that mimic TLM's novel mode of action. We report here the identification of a series of compounds possessing excellent activity against M. tuberculosis H37Rv and, dissociatively, against the β-ketoacyl synthase enzyme mtFabH which is targeted by TLM. Specifically, methyl 2-amino-5-benzylthiazole-4-carboxylate was found to inhibit M. tuberculosis H37Rv with an MIC of 0.06 µg/ml (240 nM), but showed no activity against mtFabH, whereas methyl 2-(2-bromoacetamido)-5-(3-chlorophenyl)t​hiazole-4-carboxylateinhibited mtFabH with an IC50 of 0.95±0.05 µg/ml (2.43±0.13 µM) but was not active against the whole cell organism. Conclusions/Significance These findings clearly identify the 2-aminothiazole-4-carboxylate scaffold as a promising new template towards the discovery of a new class of anti-tubercular agents

The Influence of Transcription Factor Competition on the Relationship between Occupancy and Affinity

Transcription factors (TFs) are proteins that bind to specific sites on the DNA and regulate gene activity. Identifying where TF molecules bind and how much time they spend on their target sites is key to understanding transcriptional regulation. It is usually assumed that the free energy of binding of a TF to the DNA (the affinity of the site) is highly correlated to the amount of time the TF remains bound (the occupancy of the site). However, knowing the binding energy is not sufficient to infer actual binding site occupancy. This mismatch between the occupancy predicted by the affinity and the observed occupancy may be caused by various factors, such as TF abundance, competition between TFs or the arrangement of the sites on the DNA. We investigated the relationship between the affinity of a TF for a set of binding sites and their occupancy. In particular, we considered the case of the transcription factor lac repressor (lacI) in E.coli, and performed stochastic simulations of the TF dynamics on the DNA for various combinations of lacI abundance and competing TFs that contribute to macromolecular crowding. We also investigated the relationship of site occupancy and the information content of position weight matrices (PWMs) used to represent binding sites. Our results showed that for medium and high affinity sites, TF competition does not play a significant role for genomic occupancy except in cases when the abundance of the TF is significantly increased, or when the PWM displays relatively low information content. Nevertheless, for medium and low affinity sites, an increase in TF abundance (for both cognate and non-cognate molecules) leads to an increase in occupancy at several sites. © 2013 Zabet et al