2,392 research outputs found

    Predicting the Impact of Alternative Splicing on Plant MADS Domain Protein Function

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    Several genome-wide studies demonstrated that alternative splicing (AS) significantly increases the transcriptome complexity in plants. However, the impact of AS on the functional diversity of proteins is difficult to assess using genome-wide approaches. The availability of detailed sequence annotations for specific genes and gene families allows for a more detailed assessment of the potential effect of AS on their function. One example is the plant MADS-domain transcription factor family, members of which interact to form protein complexes that function in transcription regulation. Here, we perform an in silico analysis of the potential impact of AS on the protein-protein interaction capabilities of MIKC-type MADS-domain proteins. We first confirmed the expression of transcript isoforms resulting from predicted AS events. Expressed transcript isoforms were considered functional if they were likely to be translated and if their corresponding AS events either had an effect on predicted dimerisation motifs or occurred in regions known to be involved in multimeric complex formation, or otherwise, if their effect was conserved in different species. Nine out of twelve MIKC MADS-box genes predicted to produce multiple protein isoforms harbored putative functional AS events according to those criteria. AS events with conserved effects were only found at the borders of or within the K-box domain. We illustrate how AS can contribute to the evolution of interaction networks through an example of selective inclusion of a recently evolved interaction motif in the MADS AFFECTING FLOWERING1-3 (MAF1–3) subclade. Furthermore, we demonstrate the potential effect of an AS event in SHORT VEGETATIVE PHASE (SVP), resulting in the deletion of a short sequence stretch including a predicted interaction motif, by overexpression of the fully spliced and the alternatively spliced SVP transcripts. For most of the AS events we were able to formulate hypotheses about the potential impact on the interaction capabilities of the encoded MIKC protein

    Feeding and oviposition preferences of Monochamus galloprovincialis on its main hosts Pinus sylvestris and Pinus pinaster

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    Θεωρώντας τον ρόλο του Monochamus galloprovincialis κλειδί στην εξάπλωση του νηματώδη του πεύκου στην Ευρώπη, η διαλεύκανση του εύρους των ξενιστών και των προτιμήσεων του Μ. galloprovincialis σε αυτούς είναι πρωτεύουσας σημασίας για την προστασία του δάσους. Συγκριτικές μελέτες σε συνθήκες εργαστηρίου διεξήχθησαν με σκοπό την διευκρίνηση των διατροφικών και ωοθετικών προτιμήσεων των ενηλίκων αυτού του εντόμου καθώς και της ανάπτυξης των προνυμφών του στα P. sylvestris και P. pinaster. Η διατροφή και η ωοτοκία βρέθηκαν στατιστικά πιο σημαντικές στο P. sylvestris αλλά καμία διαφορά δεν βρέθηκε στην επιβίωση των προνυμφών στα δύο είδη πεύκου. Οι προνύμφες έφτασαν στην 4η ηλικία νωρίτερα στο P. sylvestris από ότι στο P. pinaster. Τα αποτελέσματα της παρούσης μελέτης ισχυροποιούν τις υποψίες για μια γρήγορη μελλοντική εξάπλωση του νηματώδη σε ολόκληρη την Ευρώπη.Considering the key role of Monochamus galloprovincialis (Olivier) (Coleoptera: Cerambycidae) in the dispersion of the pine wood nematode, Bursaphelenchus xylophilus (Steiner & Bührer) Nickle (Nematoda: Aphelenchoidea), in Europe, defining the host spectrum and preference of M. galloprovincialis is of primary importance for forest management. Therefore, comparative studies under laboratory conditions were performed in order to define the feeding and oviposition preferences of M. galloprovincialis adults as well as the larval development on Pinus sylvestris and Pinus pinaster. Both nutrition and oviposition were significantly higher on P. sylvestris. However, no difference was found when comparing larval survival on the two Pinus species even though larvae attended the fourth instar earlier when reared on P. sylvestris than on P. pinaster. The results of this study reinforce the suspicions of a future rapid propagation of the nematode, by M. galloprovincialis, into the Pine forests all over Europe

    Feeding and oviposition preferences of Monochamus galloprovincialis on its main hosts Pinus sylvestris and Pinus pinaster

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    Θεωρώντας τον ρόλο του Monochamus galloprovincialis κλειδί στην εξάπλωση του νηματώδη του πεύκου στην Ευρώπη, η διαλεύκανση του εύρους των ξενιστών και των προτιμήσεων του Μ. galloprovincialis σε αυτούς είναι πρωτεύουσας σημασίας για την προστασία του δάσους. Συγκριτικές μελέτες σε συνθήκες εργαστηρίου διεξήχθησαν με σκοπό την διευκρίνηση των διατροφικών και ωοθετικών προτιμήσεων των ενηλίκων αυτού του εντόμου καθώς και της ανάπτυξης των προνυμφών του στα P. sylvestris και P. pinaster. Η διατροφή και η ωοτοκία βρέθηκαν στατιστικά πιο σημαντικές στο P. sylvestris αλλά καμία διαφορά δεν βρέθηκε στην επιβίωση των προνυμφών στα δύο είδη πεύκου. Οι προνύμφες έφτασαν στην 4η ηλικία νωρίτερα στο P. sylvestris από ότι στο P. pinaster. Τα αποτελέσματα της παρούσης μελέτης ισχυροποιούν τις υποψίες για μια γρήγορη μελλοντική εξάπλωση του νηματώδη σε ολόκληρη την Ευρώπη.Considering the key role of Monochamus galloprovincialis (Olivier) (Coleoptera: Cerambycidae) in the dispersion of the pine wood nematode, Bursaphelenchus xylophilus (Steiner & Bührer) Nickle (Nematoda: Aphelenchoidea), in Europe, defining the host spectrum and preference of M. galloprovincialis is of primary importance for forest management. Therefore, comparative studies under laboratory conditions were performed in order to define the feeding and oviposition preferences of M. galloprovincialis adults as well as the larval development on Pinus sylvestris and Pinus pinaster. Both nutrition and oviposition were significantly higher on P. sylvestris. However, no difference was found when comparing larval survival on the two Pinus species even though larvae attended the fourth instar earlier when reared on P. sylvestris than on P. pinaster. The results of this study reinforce the suspicions of a future rapid propagation of the nematode, by M. galloprovincialis, into the Pine forests all over Europe

    Curcumin Protects -SH Groups and Sulphate Transport after Oxidative Damage in Human Erythrocytes

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    Background/Aims: Erythrocytes, continuously exposed to oxygen pressure and toxic compounds, are sensitive to oxidative stress, namely acting on integral Band 3 protein, with consequences on cell membranes deformability and anion transport efficiency. The aim of the present investigation, conducted on human erythrocytes, is to verify whether curcumin (1 or 10µM), a natural compound with proved antioxidant properties, may counteract Band 3-mediated anion transport alterations due to oxidative stress. Methods: Oxidative conditions were induced by exposure to, alternatively, either 2 mM N-ethylmaleimide (NEM) or pH-modified solutions (6.5 and 8.5). Rate constant for SO4= uptake and -SH groups estimation were measured to verify the effect of oxidative stress on anion transport efficiency and erythrocyte membranes. Results: After the exposure of erythrocytes to, alternatively, NEM or pH-modified solutions, a significant decrease in both rate constant for SO4= uptake and -SH groups was observed, which was prevented by curcumin, with a dose-dependent effect. Conclusions: Our results show that: i) the decreased efficiency of anion transport may be due to changes in Band 3 protein structure caused by cysteine -SH groups oxidation, especially after exposure to NEM and pH 6.5; ii) 10 µM Curcumin is effective in protecting erythrocytes from oxidative stress events at level of cell membrane transport

    a cephalometric intercentre comparison of patients with unilateral cleft lip and palate at 5 and 10 years of age

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    SUMMARY The aim of this study was to evaluate any differences between the craniofacial growth of unilateral cleft lip and palate (UCLP) patients who underwent surgery in the Milan CLP centre with those from the Oslo CLP centre at 5 and 10 years of age. The Milan sample comprised 88 UCLP patients (60 males, 28 females) at 5 years of age and 26 patients (17 males, 9 females) at 10 years of age all operated on by the same surgeon. The Oslo sample consisted of 48 UCLP patients (26 males, 22 females) aged 5 years and 29 patients (20 males, 9 females) aged 10 years treated by four different surgeons. Lateral cephalometric radiographs obtained for both samples were analysed and angular measurements and ratios were calculated both for the hard and soft tissues. Statistical analysis was undertaken with an unpaired t -test. At 5 years of age, there were neither sagittal nor vertical hard tissue differences between the two groups. With regard to the soft tissues, only the naso-labial angle showed a statistically signifi cant difference (Milan greater than Oslo by 5 degrees, P 2.6 degrees, P 2.9 degrees, P < 0.001, respectively. At 5 years of age, the Milan UCLP sample had the same maxillary protrusion as the Oslo group, while at 10 years of age, the Milan sample were slightly less protruded than the Oslo group
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