Herpetofaunal Inventories of the National Parks of South Florida and the Caribbean: Volume III. Big Cypress National Preserve

Amphibian declines and extinctions have been documented around the world, often in protected natural areas. Concern for this trend has prompted the U.S. Geological Survey and the National Park Service to document all species of amphibians that occur within U.S. National Parks and to search for any signs that amphibians may be declining. This study, an inventory of amphibian species in Big Cypress National Preserve, was conducted from 2002 to 2003. The goals of the project were to create a georeferenced inventory of amphibian species, use new analytical techniques to estimate proportion of sites occupied by each species, look for any signs of amphibian decline (missing species, disease, die-offs, and so forth.), and to establish a protocol that could be used for future monitoring efforts. Several sampling methods were used to accomplish these goals. Visual encounter surveys and anuran vocalization surveys were conducted in all habitats throughout the park to estimate the proportion of sites or proportion of area occupied (PAO) by each amphibian species in each habitat. Opportunistic collections, as well as limited drift fence data, were used to augment the visual encounter methods for highly aquatic or cryptic species. A total of 545 visits to 104 sites were conducted for standard sampling alone, and 2,358 individual amphibians and 374 reptiles were encountered. Data analysis was conducted in program PRESENCE to provide PAO estimates for each of the anuran species. All of the amphibian species historically found in Big Cypress National Preserve were detected during this project. At least one individual of each of the four salamander species was captured during sampling. Each of the anuran species in the preserve was adequately sampled using standard herpetological sampling methods, and PAO estimates were produced for each species of anuran by habitat. This information serves as an indicator of habitat associations of the species and relative abundance of sites occupied, but it will also be useful as a comparative baseline for future monitoring efforts. In addition to sampling for amphibians, all encounters with reptiles were documented. The sampling methods used for detecting amphibians are also appropriate for many reptile species. These reptile locations are included in this report, but the number of reptile observations was not sufficient to estimate PAO for reptile species. We encountered 35 of the 46 species of reptiles believed to be present in Big Cypress National Preserve during this study, and evidence exists of the presence of four other reptile species in the Preserve. This study found no evidence of amphibian decline in Big Cypress National Preserve. Although no evidence of decline was observed, several threats to amphibians were identified. Introduced species, especially the Cuban treefrog (Osteopilus septentrionalis), are predators and competitors with several native frog species. The recreational use of off-road vehicles has the potential to affect some amphibian populations, and a study on those potential impacts is currently underway. Also, interference by humans with the natural hydrologic cycle of south Florida has the potential to alter the amphibian community. Continued monitoring of the amphibian species in Big Cypress National Preserve is recommended. The methods used in this study were adequate to produce reliable estimates of the proportion of sites occupied by most anuran species, and are a cost-effective means of determining the status of their populations

Vortices in self-gravitating disks

Vortices are believed to greatly help the formation of km sized planetesimals by collecting dust particles in their centers. However, vortex dynamics is commonly studied in non-self-gravitating disks. The main goal here is to examine the effects of disk self-gravity on the vortex dynamics via numerical simulations. In the self-gravitating case, when quasi-steady gravitoturbulent state is reached, vortices appear as transient structures undergoing recurring phases of formation, growth to sizes comparable to a local Jeans scale, and eventual shearing and destruction due to gravitational instability. Each phase lasts over 2-3 orbital periods. Vortices and density waves appear to be coupled implying that, in general, one should consider both vortex and density wave modes for a proper understanding of self-gravitating disk dynamics. Our results imply that given such an irregular and rapidly changing, transient character of vortex evolution in self-gravitating disks it may be difficult for such vortices to effectively trap dust particles in their centers that is a necessary process towards planet formation.Comment: to appear in the proceedings of Cool Stars, Stellar Systems and The Sun, 15th Cambridge Workshop, St. Andrews, Scotland, July 21-25, 200

The role of the energy equation in the fragmentation of protostellar discs during stellar encounters

In this paper, we use high-resolution smoothed particle hydrodynamics (SPH) simulations to investigate the response of a marginally stable self-gravitating protostellar disc to a close parabolic encounter with a companion discless star. Our main aim is to test whether close brown dwarfs or massive planets can form out of the fragmentation of such discs. We follow the thermal evolution of the disc by including the effects of heating due to compression and shocks and a simple prescription for cooling and find results that contrast with previous isothermal simulations. In the present case we find that fragmentation is inhibited by the interaction, due to the strong effect of tidal heating, which results in a strong stabilization of the disc. A similar behaviour was also previously observed in other simulations involving discs in binary systems. As in the case of isolated discs, it appears that the condition for fragmentation ultimately depends on the cooling rate.Comment: 9 pages, 10 figures, accepted in MNRA

Semi-Phenomenological Analysis of Dynamics of Nonlinear Excitations in One-Dimensional Electron-Phonon System

The structure of moving nonlinear excitations in one-dimensional electron-phonon systems is studied semi-phenomenologically by using an effective action in which the width of the nonlinear excitation is treated as a dynamical variable. The effective action can be derived from Su, Schrieffer and Heeger's model or its continuum version proposed by Takayama, Lin-Liu and Maki with an assumption that the nonlinear excitation moves uniformly without any deformation except the change of its width. The form of the action is essentially the same as that discussed by Bishop and coworkers in studying the dynamics of the soliton in polyacetylene, though some details are different. For the moving excitation with a velocity $v$, the width is determined by minimizing the effective action. A requirement that there must be a minimum in the action as a function of its width provides a maximum velocity. The velocity dependence of the width and energy can be determined. The motions of a soliton in p olyacetylene and an acoustic polaron in polydiacetylene are studied within this formulation. The obtained results are in good agreement with those of numerical simulations.Comment: 19 pages, LaTeX, 7 Postscript figures, to be published in J. Phys. Soc. Jpn. vol.65 (1996) No.

The influence of chiral surface states on the London penetration depth in Sr2_2RuO4_4

The London penetration depth for the unconventional superconductor Sr$_2$RuO$_4$ is analyzed assuming an order parameter which breaks time reversal symmetry and parity simultaneously. Such a superconducting state possesses chiral quasiparticle states with subgap energies at the surface. We show that these subgap states can give a significant contribution to the low-temperature behavior of the London penetration depth yielding a $T^2$ power-law even though bulk quasiparticle spectrum is gapped. The presence of several electron bands gives rise to interband transition among the subgap surface states and influences the properties of the surface impedance. Furthermore, the surface states lead also to a non-linear Meissner effect.Comment: 4 pages, 1 figure, the definition of the Nambu field operator introduced, and some typos correcte

Sea turtle nesting in the Ten Thousand Islands of Florida

Loggerhead sea turtles (Caretta caretta) nest in numerous substrate and beach types within the Ten Thousand Islands (TTl) of southwest Florida. Nesting beach selection was analyzed on 12 islands within this archipelago. Numerous physical characteristics were recorded to identify the relatedness of these variables and determine their importance for nesting beach selection in C. caretta. These variables were chosen after evaluating the islands, conducting literature searches and soliciting personal communications. Along transects, data were collected, on the following: height of canopy, beach width, overall slope (beach slope and slope of offshore approach) and sand samples analyzed for pH, percentage of water, percentage of organic content, percentage of carbonate and particle size (8 size classes). Data on ordinal aspect of beaches and beach length were also recorded and included in the analysis. All of the variables were analyzed by tree regression, incorporating the nesting data into the analysis. In the TTl, loggerheads appear to prefer wider beaches (p< 0.001; R2 = 0.56) that inherently have less slope, and secondarily, wider beaches that have low amounts of carbonate (p< O.00 1). In addition, C. caretta favors nest sites within or in close proximity to the supra-littoral vegetation zone of beaches in the TTl (p< 0.001). (86 page document

The Statistics of the Points Where Nodal Lines Intersect a Reference Curve

We study the intersection points of a fixed planar curve $\Gamma$ with the nodal set of a translationally invariant and isotropic Gaussian random field \Psi(\bi{r}) and the zeros of its normal derivative across the curve. The intersection points form a discrete random process which is the object of this study. The field probability distribution function is completely specified by the correlation G(|\bi{r}-\bi{r}'|) = . Given an arbitrary G(|\bi{r}-\bi{r}'|), we compute the two point correlation function of the point process on the line, and derive other statistical measures (repulsion, rigidity) which characterize the short and long range correlations of the intersection points. We use these statistical measures to quantitatively characterize the complex patterns displayed by various kinds of nodal networks. We apply these statistics in particular to nodal patterns of random waves and of eigenfunctions of chaotic billiards. Of special interest is the observation that for monochromatic random waves, the number variance of the intersections with long straight segments grows like $L \ln L$, as opposed to the linear growth predicted by the percolation model, which was successfully used to predict other long range nodal properties of that field.Comment: 33 pages, 13 figures, 1 tabl

Sindbis virus ts103 has a mutation in glycoprotein E2 that leads to defective assembly of virions

Sindbis virus mutant ts103 is aberrant in the assembly of virus particles. During virus budding, proper nucleocapsid-glycoprotein interactions fail to occur such that particles containing many nucleocapsids are formed, and the final yield of virus is low. We have determined that a mutation in the external domain of glycoprotein E2, Ala-344-->Val, is the change that leads to this phenotype. Mapping was done by making recombinant viruses between ts103 and a parental strain of the virus, using a full-length cDNA clone of Sindbis virus from which infectious RNA can be transcribed, together with sequence analysis of the region of the genome shown in this way to contain the ts103 lesion. A partial revertant of ts103, called ts103R, was also mapped and sequenced and found to be a second-site revertant in which a change in glycoprotein E1 from lysine to methionine at position 227 partially suppresses the phenotypic effects of the change at E2 position 344. An analysis of revertants from ts103 mutants in which the Ala-->Val change had been transferred into a defined background showed that pseudorevertants were more likely to arise than were true revertants and that the ts103 change itself reverted very infrequently. The assembly defect in ts103 appeared to result from weakened interactions between the virus membrane glycoproteins or between these glycoproteins and the nucleocapsid during budding. Both the E2 mutation leading to the defect in virus assembly and the suppressor mutation in glycoprotein E1 are in the domains external to the lipid bilayer and thus in domains that cannot interact directly with the nucleocapsid. This suggests that in ts103, either the E1-E2 heterodimers or the trimeric spikes (consisting of three E1-E2 heterodimers) are unstable or have an aberrant configuration, and thus do not interact properly with the nucleocapsid, or cannot assembly correctly to form the proper icosahedral array on the surface of the virus