Modeling the R2* relaxivity of blood at 1.5 Tesla

BOLD (Blood Oxygenation Level Dependent) imaging is used in fMRI to show differences in activation of the brain based on the relative changes of the T2* (= 1/R2*) signal of the blood. However, quantification of blood oxygenation level based on the T2* signal has been hindered by the lack of a predictive model which accurately correlates the T2* signal to the oxygenation level of blood. The T2* signal decay in BOLD imaging is generated due to blood containing paramagnetic deoxyhemoglobin (in comparison to diamagnetic oxyhemoglobin). This generates local field inhomogeneities, which cause protons to experience different phase shifts, leading to dephasing and the MR signal decay. The blood T2* signal has been shown to decay with a complex behavior1, termed Non-Lorenztian, and thus is not adequately described by the traditional model of simplemono-exponential decay. Theoretical calculations show that diffusion narrowing substantially affects signal loss in our data. Over the past decade, several theoretical models have been proposed to describe this Non-Lorenztian behavior in the blood T2* signal in BOLD fMRI imaging. The goal of this project was to investigate different models which have been proposed over the years and determine a semi-phenomenological model for the T2* behaviorusing actual MR blood data

Accuracy and reliability of diffusion imaging models

Diffusion imaging aims to non-invasively characterize the anatomy and integrity of the brain\u27s white matter fibers. We evaluated the accuracy and reliability of commonly used diffusion imaging methods as a function of data quantity and analysis method, using both simulations and highly sampled individual-specific data (927-1442 diffusion weighted images [DWIs] per individual). Diffusion imaging methods that allow for crossing fibers (FSL\u27s BedpostX [BPX], DSI Studio\u27s Constant Solid Angle Q-Ball Imaging [CSA-QBI], MRtrix3\u27s Constrained Spherical Deconvolution [CSD]) estimated excess fibers when insufficient data were present and/or when the data did not match the model priors. To reduce such overfitting, we developed a novel Bayesian Multi-tensor Model-selection (BaMM) method and applied it to the popular ball-and-stick model used in BedpostX within the FSL software package. BaMM was robust to overfitting and showed high reliability and the relatively best crossing-fiber accuracy with increasing amounts of diffusion data. Thus, sufficient data and an overfitting resistant analysis method enhance precision diffusion imaging. For potential clinical applications of diffusion imaging, such as neurosurgical planning and deep brain stimulation (DBS), the quantities of data required to achieve diffusion imaging reliability are lower than those needed for functional MRI

Diffusion MR imaging characteristics of the developing primate brain

Diffusion-based magnetic resonance imaging holds the potential to noninvasively demonstrate cellular-scale structural properties of brain. This method was applied to fixed baboon brains ranging from 90 to 185 days gestational age to characterize the changes in diffusion properties associated with brain development. Within each image voxel, a probability-theory-based approach was employed to choose, from a group of analytic equations, the one that best expressed water displacements. The resulting expressions contain eight or fewer adjustable parameters, indicating that relatively simple expressions are sufficient to obtain a complete description of the diffusion MRI signal in developing brain. The measured diffusion parameters changed systematically with gestational age, reflecting the rich underlying microstructural changes that take place during this developmental period. These changes closely parallel those of live, developing human brain. The information obtained from this primate model of cerebral microstructure is directly applicable to studies of human development

be estimated? Bayesian view

How accurately can the parameters from a model of anisotropic 3 He gas diffusion in lung acinar airway