Open data from physical model tests: Lessons learned from related initiatives

The HYDRALAB network of European physical model laboratories (www.hydralab.eu) has a range of facilities that includes flumes, basins, ice facilities, rotating tanks and environmental facilities. Each institution had its own data collection system, there are many proprietorial data formats, a shortage of meta-data and no central effort to curate or preserve this data in a findable, accessible, interoperable and reusable (FAIR) way. HYDRALAB+ (2015-2019) is a European Commission Horizon 2020 project to support this network, which requires FAIR data management. HYDRALAB is reviewing the steps taken to make data openly accessible in related disciplines, so that lessons learned can be applied to HDRALAB+. The chosen communities were: (i) the University of Hull’s digital repository, (ii) EMODnet Baltic Checkpoint, (iii) OpenEarth and (iv) the FP7 projects PEGASO and MEDINA and the EU MED project COASTGAP. It is clear that no one solution can deal with all situations: different data types and requirements can best be dealt with by different approaches. Standards for meta-data should be applied, but no existing standard covers the range of situations faced by HYDRALAB. All can be extended in a bespoke manner (which can potentially be included in an update of the standard) but it is highly likely that more than one standard (and none) will be used in such a diverse community. This is perfectly acceptable, so long as the standard is published. There is also a clear need for guidance on the development of repositories where large volumes of data are collected and an understanding of how much needs to be made available on-line. Although there can be conflicts of interest between institutions that are developing policies for data management and projects that want a uniform approach to data management across all partners, systems today can generally accommodate this

On the Origin and Spread of the Scab Disease of Apple: Out of Central Asia

Background Venturia inaequalis is an ascomycete fungus responsible for apple scab, a disease that has invaded almost all apple growing regions worldwide, with the corresponding adverse effects on apple production. Monitoring and predicting the effectiveness of intervention strategies require knowledge of the origin, introduction pathways, and population biology of pathogen populations. Analysis of the variation of genetic markers using the inferential framework of population genetics offers the potential to retrieve this information. Methodology/Principal Findings Here, we present a population genetic analysis of microsatellite variation in 1,273 strains of V. inaequalis representing 28 orchard samples from seven regions in five continents. Analysis of molecular variance revealed that most of the variation (88%) was distributed within localities, which is consistent with extensive historical migrations of the fungus among and within regions. Despite this shallow population structure, clustering analyses partitioned the data set into separate groups corresponding roughly to geography, indicating that each region hosts a distinct population of the fungus. Comparison of the levels of variability among populations, along with coalescent analyses of migration models and estimates of genetic distances, was consistent with a scenario in which the fungus emerged in Central Asia, where apple was domesticated, before its introduction into Europe and, more recently, into other continents with the expansion of apple growing. Across the novel range, levels of variability pointed to multiple introductions and all populations displayed signatures of significant post-introduction increases in population size. Most populations exhibited high genotypic diversity and random association of alleles across loci, indicating recombination both in native and introduced areas. Conclusions/Significance Venturia inaequalis is a model of invasive phytopathogenic fungus that has now reached the ultimate stage of the invasion process with a broad geographic distribution and well-established populations displaying high genetic variability, regular sexual reproduction, and demographic expansion.Contexte Venturia inaequalis est un champignon ascomycete responsable de la tavelure du pommier, une maladie qui a envahi presque toutes les régions du monde où le pommier est cultivé posant ainsi de graves problèmes en production. Prévenir et enrayer efficacement la réussite d’un tel succès invasif nécessite des connaissances approfondies sur l’origine, les voies d’introduction, la biologie et la génétique de ces populations invasives. En utilisant le potentiel d’inférence de la génétique des populations, l’analyse de la variation de marqueurs génétiques offre la possibilité d’accéder à ces informations. Méthodologie et Principaux résultats Ici nous présentons l’analyse de données microsatellites obtenues pour 1273 souches de V. inaequalis provenant de 28 vergers prélevées dans 7 régions sur les 5 continents. L’analyse de la variance moléculaire révèle que 88% de la variation se retrouve dans les vergers échantillonnés, ce qui est compatible avec d’importantes migrations historiques du champignon entre et à l’intérieur même des régions. Malgré cette très faible structuration des populations, les différentes analyses de clustering mettent en évidence un partage des populations en groupes séparés correspondant à leur origine géographique, montrant ainsi que chaque région héberge une population distincte du champignon. Ensemble, les résultats obtenus sur la comparaison du niveau de variabilité entre populations, les analyses de coalescence et les modèles de migration testés plaident en faveur d’un scénario dans lequel le champignon aurait émergé d’Asie Centrale, où le pommier a été domestiqué, avant d’être introduit en Europe puis plus récemment dans les autres continents suite à l’expansion de la culture du pommier. Les niveaux de variabilité indiquent que ces territoires ont subi des introductions multiples et que les populations portent toutes des signatures révélant de fortes expansions démographiques après leur introduction. Enfin, la forte diversité génotypique des populations et l’association aléatoire des allèles entre loci suggèrent que le champignon présente une reproduction sexuée régulière à la fois dans les régions où il a été introduit et dans sa région native. Conclusion et Portée. Venturia inaequalis est un modèle de champignons phytopathogène invasif qui a maintenant atteint le stade ultime du processus invasif, c’est à dire une très large distribution géographique par des populations bien établies montrant une grande diversité génétique, une reproduction sexuée régulière et une histoire d’expansion démographique

Public Stakeholders's Perception of ICZM and Coastal Erosion in the Mediterranean

Along the European Mediterranean coasts, different approaches to coastal management and defence and various degrees of development and implementation of national ICZM strategies can be found. As part of the Regional Framework Operation BeachMed-e (2006-2008), a research project was carried out in order to analyze the different situations and to contribute to the further development of a common approach. This paper presents and discusses the results of the surveys conducted in five pilot sites along the European Mediterranean coastal zone (Greece, Italy and France) in order to evaluate beach visitors’ perception of ICZM, coastal erosion and coastal defence systems, and beach visitors’ Willingness To Pay (WTP) for beach defence. The survey of the preferences and opinions of beach visitors could yield important information for coastal and beach managers. Surprisingly, the level of awareness about generic Coastal Zone Management was found to be rather low in all regions except Riccione Southern beach, Emilia Romagna Region. In the Languedoc-Roussillon Region, this is justified by the fact that most of the respondents were not local people or beach visitors (other than recreational short term visitors). As regards coastal erosion it appears significant that, despite the lack of awareness demonstrated overall by stakeholders in the Region of East Macedonia and Thrace, visitors respond very positively to definitions and show awareness of the erosion process in their coastal system. In conclusion, in order to raise public awareness about ICZM, erosion and coastal defence systems, it is suggested that education, training and public awareness should be promoted as well as identification of local needs for the implementation of specific demand-driven studies