Algues Viséennes du sondage de Turnhout (Campine, Belgique)

The article describes twenty-five algae, mostly green algae (dasycladaceans and codiaceans) observed in the Visean carbonates of the Turnhout borehole. Two species are new: Orthriosiphon turnhouti and Atractyliopsis weyanti</i

Chemical distribution in Belgium from 2007 to 2010:an empirical study

Chemical distribution is described from a product lifecycle perspective. The impact of the economic decline in 2009 on Belgian chemical distribution is given in figures. In 2010 the sector recovered sharply. Although the individual companies performed very differently, overall, 2010 was even better than 2008. Increasingly complex legislation on chemical products has initiated a consolidation trend in the sector which in turn has brought on trends in outsourcing and inventory management.<br

Distribution of the invasive calanoid copepod <i>Pseudodiaptomus marinus</i> (Sato, 1913) in the Belgian part of the North Sea

The population structure of the non-indigenous calanoid copepod Pseudodiaptomus marinus (Sato, 1913) in the Belgian part of the North Sea (BPNS) is reported for the first time. Detailed P. marinus abundance data including sex and age class of the individuals was gathered on a monthly basis from February 2015 to February 2016 at six sites within the BPNS and Belgian harbors. Relevant environmental variables were analysed to identify potential drivers explaining the population structure of P. marinus within the BPNS. The abundances found were unexpectedly high, with peak densities of up to 560 ± 163 ind.m-3. Even though P. marinus was found in all stations sampled, large spatial and temporal differences were found in the abundance of this species. P. marinus population structure was best explained by water temperature and chlorophyll a concentrations, while salinity and concentrations of dissolved inorganic nitrogen did not influence the distribution. The reported high abundances of the species, especially in the harbor of Zeebrugge, together with the high relative abundances of copepodites indicate that the species is able to reproduce within the BPNS and Belgian harbors, possibly leading to an established, permanent population. It is crucial to study the distribution of this species for a longer period in order to determine the possible establishment of this species in the BPNS and consequences for local planktonic populations

Optimized plankton imaging, clustering and visualization workflows through integrative data management and application of artificial intelligence

Phytoplankton is a diverse group of photosynthesizing organisms which account for approximately fifty percent of the primary production on Earth. Increasing our knowledge on phytoplankton dynamics (and plankton in general) is therefore of major importance. In the present research, we aimed to reveal the spatiotemporal dynamics of the phyto- and zooplankton community in the Eastern English Channel, Southern Bight of the North Sea and the Thames estuary. To do so, we organized a JERICO-NEXT Lifewatch cruise in May 2017 on board of the RV Simon Stevin and sampled 44 stations, involving five research institutions from France (CNRS-LOG,), The Netherlands (RWS, NIOZ) and Belgium (UGENT, VLIZ). To quantify the biomass of the phytoplankton community we used a unique combination of three flow cytometers and two Fast Repetition Rate Fluorometerss that were coupled to the underway ferrybox system. These observations were complemented with Water Insight Spectrometer and water profile data (by means of a CTD) and samples for zooplankton, pigment and nutrient analysis. A dedicated data workshop was organized with all partners to conduct a joint analysis on both the biotic and abiotic data. A first exploration of the data, by means of regression-based models and multivariate statistics, suggested that mainly nutrient discharges from the rivers influence the plankton structure. Furthermore, water turbidity is controlling photosynthetic activity and horizontal and vertical variations of photosynthetic properties can be discriminated

Fast and accurate mutation detection in whole genome sequences of multiple isogenic samples with IsoMut

Background: Detection of somatic mutations is one of the main goals of next generation DNA sequencing. A wide range of experimental systems are available for the study of spontaneous or environmentally induced mutagenic processes. However, most of the routinely used mutation calling algorithms are not optimised for the simultaneous analysis of multiple samples, or for non-human experimental model systems with no reliable databases of common genetic variations. Most standard tools either require numerous in-house post filtering steps with scarce documentation or take an unpractically long time to run. To overcome these problems, we designed the streamlined IsoMut tool which can be readily adapted to experimental scenarios where the goal is the identification of experimentally induced mutations in multiple isogenic samples. Methods: Using 30 isogenic samples, reliable cohorts of validated mutations were created for testing purposes. Optimal values of the filtering parameters of IsoMut were determined in a thorough and strict optimization procedure based on these test sets. Results: We show that IsoMut, when tuned correctly, decreases the false positive rate compared to conventional tools in a 30 sample experimental setup; and detects not only single nucleotide variations, but short insertions and deletions as well. IsoMut can also be run more than a hundred times faster than the most precise state of art tool, due its straightforward and easily understandable filtering algorithm. Conclusions: IsoMut has already been successfully applied in multiple recent studies to find unique, treatment induced mutations in sets of isogenic samples with very low false positive rates. These types of studies provide an important contribution to determining the mutagenic effect of environmental agents or genetic defects, and IsoMut turned out to be an invaluable tool in the analysis of such data. © 2017 The Author(s)