Constructing Priors that Penalize the Complexity of Gaussian Random Fields

Priors are important for achieving proper posteriors with physically meaningful covariance structures for Gaussian random fields (GRFs) since the likelihood typically only provides limited information about the covariance structure under in-fill asymptotics. We extend the recent Penalised Complexity prior framework and develop a principled joint prior for the range and the marginal variance of one-dimensional, two-dimensional and three-dimensional Mat\'ern GRFs with fixed smoothness. The prior is weakly informative and penalises complexity by shrinking the range towards infinity and the marginal variance towards zero. We propose guidelines for selecting the hyperparameters, and a simulation study shows that the new prior provides a principled alternative to reference priors that can leverage prior knowledge to achieve shorter credible intervals while maintaining good coverage. We extend the prior to a non-stationary GRF parametrized through local ranges and marginal standard deviations, and introduce a scheme for selecting the hyperparameters based on the coverage of the parameters when fitting simulated stationary data. The approach is applied to a dataset of annual precipitation in southern Norway and the scheme for selecting the hyperparameters leads to concervative estimates of non-stationarity and improved predictive performance over the stationary model

Spatial Aggregation with Respect to a Population Distribution

Spatial aggregation with respect to a population distribution involves estimating aggregate quantities for a population based on an observation of individuals in a subpopulation. In this context, a geostatistical workflow must account for three major sources of `aggregation error': aggregation weights, fine scale variation, and finite population variation. However, common practice is to treat the unknown population distribution as a known population density and ignore empirical variability in outcomes. We improve common practice by introducing a `sampling frame model' that allows aggregation models to account for the three sources of aggregation error simply and transparently. We compare the proposed and the traditional approach using two simulation studies that mimic neonatal mortality rate (NMR) data from the 2014 Kenya Demographic and Health Survey (KDHS2014). For the traditional approach, undercoverage/overcoverage depends arbitrarily on the aggregation grid resolution, while the new approach exhibits low sensitivity. The differences between the two aggregation approaches increase as the population of an area decreases. The differences are substantial at the second administrative level and finer, but also at the first administrative level for some population quantities. We find differences between the proposed and traditional approach are consistent with those we observe in an application to NMR data from the KDHS2014.Comment: main manuscript: 33 pages, 5 figures, 5 tables; supplemental materials: 15 pages, 2 figures, 15 table

Exploring a New Class of Non-stationary Spatial Gaussian Random Fields with Varying Local Anisotropy

Gaussian random fields (GRFs) constitute an important part of spatial modelling, but can be computationally infeasible for general covariance structures. An efficient approach is to specify GRFs via stochastic partial differential equations (SPDEs) and derive Gaussian Markov random field (GMRF) approximations of the solutions. We consider the construction of a class of non-stationary GRFs with varying local anisotropy, where the local anisotropy is introduced by allowing the coefficients in the SPDE to vary with position. This is done by using a form of diffusion equation driven by Gaussian white noise with a spatially varying diffusion matrix. This allows for the introduction of parameters that control the GRF by parametrizing the diffusion matrix. These parameters and the GRF may be considered to be part of a hierarchical model and the parameters estimated in a Bayesian framework. The results show that the use of an SPDE with non-constant coefficients is a promising way of creating non-stationary spatial GMRFs that allow for physical interpretability of the parameters, although there are several remaining challenges that would need to be solved before these models can be put to general practical use

Impact of Jittering on Raster- and Distance-based Geostatistical Analyses of DHS Data

Fine-scale covariate rasters are routinely used in geostatistical models for mapping demographic and health indicators based on household surveys from the Demographic and Health Surveys (DHS) program. However, the geostatistical analyses ignore the fact that GPS coordinates in DHS surveys are jittered for privacy purposes. We demonstrate the need to account for this jittering, and we propose a computationally efficient approach that can be routinely applied. We use the new method to analyse the prevalence of completion of secondary education for 20--49 year old women in Nigeria in 2018 based on the 2018 DHS survey. The analysis demonstrates substantial changes in the estimates of spatial range and fixed effects compared to when we ignore jittering. Through a simulation study that mimics the dataset, we demonstrate that accounting for jittering reduces attenuation in the estimated coefficients for covariates and improves predictions. The results also show that the common approach of averaging covariate values in windows around the observed locations does not lead to the same improvements as accounting for jittering

Estimating Under Five Mortality in Space and Time in a Developing World Context

Accurate estimates of the under-5 mortality rate (U5MR) in a developing world context are a key barometer of the health of a nation. This paper describes new models to analyze survey data on mortality in this context. We are interested in both spatial and temporal description, that is, wishing to estimate U5MR across regions and years, and to investigate the association between the U5MR and spatially-varying covariate surfaces. We illustrate the methodology by producing yearly estimates for subnational areas in Kenya over the period 1980 - 2014 using data from demographic health surveys (DHS). We use a binomial likelihood with fixed effects for the urban/rural stratification to account for the complex survey design. We carry out smoothing using Bayesian hierarchical models with continuous spatial and temporally discrete components. A key component of the model is an offset to adjust for bias due to the effects of HIV epidemics. Substantively, there has been a sharp decline in U5MR in the period 1980 - 2014, but large variability in estimated subnational rates remains. A priority for future research is understanding this variability. Temperature, precipitation and a measure of malaria infection prevalence were candidates for inclusion in the covariate model.Comment: 36 pages, 11 figure

Does non-stationary spatial data always require non-stationary random fields?

A stationary spatial model is an idealization and we expect that the true dependence structures of physical phenomena are spatially varying, but how should we handle this non-stationarity in practice? We study the challenges involved in applying a flexible non-stationary model to a dataset of annual precipitation in the conterminous US, where exploratory data analysis shows strong evidence of a non-stationary covariance structure. The aim of this paper is to investigate the modelling pipeline once non-stationarity has been detected in spatial data. We show that there is a real danger of over-fitting the model and that careful modelling is necessary in order to properly account for varying second-order structure. In fact, the example shows that sometimes non-stationary Gaussian random fields are not necessary to model non-stationary spatial data.Comment: Minor change from previous version. arXiv admin note: text overlap with arXiv:1306.040