Local, but not long-distance dispersal of penguin ticks between two sub-Antarctic islands

Advances in high throughput genomic approaches are enabling the accurate appraisal of movements of diverse species, previously considered intractable. The impact of long-distance dispersal and distribution changes on species interactions (such as host-parasite interactions) is of particular importance as attempts are made to project how ecosystems will shift under environmental change. The sub-Antarctic region, comprising isolated islands separated by hundreds to thousands of kilometres of open ocean, presents an ideal model system for studying long-distance dispersal, distribution, and ecosystem change. Here we used genomic methods to determine the extent of movement of penguin ticks (Ixodes uriae) among different host species, and among penguin colonies at small (within an island) and large (among islands separated by >6000 km) scales, in the sub-Antarctic region. Our results suggest that I. uriae ticks may be readily shared between distantly related penguin species with similar phenology, but indicate that – as inferred by previous research – ticks are less likely to be shared between flighted and non-flighted sea- birds. We also find evidence for small-scale movements of penguin ticks with their hosts, but no evidence for movements between islands separated by thousands of kilometers of open ocean. These inferred limitations to penguin tick movement could be the result of restricted host movements or the inability of penguin ticks to survive extended trips at sea. Our findings help elucidate parasite-host dynamics, with implications for host health and persistence in a region experiencing rapid environmental change

Chytrid fungus infection in alpine tree frogs is associated with individual heterozygosity and population isolation but not population-genetic diversity

Chytridiomycosis, a disease caused by the emerging fungus Batrachochytrium dendrobatidis (Bd), has been implicated in the decline of over 500 amphibian species. Population declines could have important genetic consequences, including reduced genetic diversity. We contrasted genetic diversity among both long-Bd-exposed and unexposed populations of the south-east Australian alpine tree frog (Litoria verreauxii alpina) across its range. At the population level, we found no significant differences in genetic diversity between Bd-exposed and unexposed populations. Encouragingly, even Bd-infected remnant populations that are now highly isolated maintain genetic diversity comparable to populations in which Bd is absent. Spatial genetic structure among populations followed an isolation-by-distance pattern, suggesting restricted movement among remnant populations. At the individual level, greater heterozygosity was associated with reduced probability of infection. Loss of genetic diversity in remnant populations that survived chytridiomycosis epidemics does not appear to be a threat to L. v. alpina. We suggest several factors underpinning maintenance of genetic diversity: (1) remnant populations have remained large enough to avoid losses of genetic diversity; (2) many individuals in the population are able to breed once before succumbing to disease; and (3) juveniles in the terrestrial environment have low exposure to Bd, providing an annual ‘reservoir’ of genetic diversity. The association between individual heterozygosity and infection status suggests that, while other work has shown all breeding adults are typically killed by Bd, males with greater heterozygosity may survive longer and obtain fitness benefits through extended breeding opportunities. Our results highlight the critical role of life history in mitigating the impacts of Bd infection for some amphibian species, but we infer that increased isolation as a result of disease-induced population extirpations will enhance population differentiation and thus biogeographic structure

The importance of replicating genomic analyses to verify phylogenetic signal for recently evolved lineages

Genomewide SNP data generated by nontargeted methods such as RAD and GBS are increasingly being used in phylogenetic and phylogeographic analyses. When these methods are used in the absence of a reference genome, however, little is known about the locations and evolution of the SNPs. In using such data to address phylogenetic questions, researchers risk drawing false conclusions, particularly if a representative number of SNPs is not obtained. Here, we empirically test the robustness of phylogenetic inference based on SNP data for closely related lineages. We conducted a genomewide analysis of 75 712 SNPs, generated via GBS, of southern bull-kelp (Durvillaea). Durvillaea chathamensis co-occurs with D. antarctica on Chatham Island, but the two species have previously been found to be so genetically similar that the status of the former has been questioned. Our results show that D. chathamensis, which differs from D. antarctica ecologically as well as morphologically, is indeed a reproductively isolated species. Furthermore, our replicated analyses show that D. chathamensis cannot be reliably distinguished phylogenetically from closely related D. antarctica using subsets (ranging in size from 400 to 10 000 sites) of the 40 912 parsimony-informative SNPs in our data set and that bootstrap values alone can give misleading impressions of the strength of phylogenetic inferences. These results highlight the importance of independently replicating SNP analyses to verify that phylogenetic inferences based on nontargeted SNP data are robust. Our study also demonstrates that modern genomic approaches can be used to identify cases of recent or incipient speciation that traditional approaches (e.g. Sanger sequencing of a few loci) may be unable to detect or resolve.This research was supported by an Australian Research Council Discovery Early Career Research Award (DE140101715 to CIF) and University of Otago Performance Based Research Funding (to JMW)

Breaking down the barrier: dispersal across the Antarctic Polar Front

Our view of the Antarctic Polar Front (APF) as a circum-polar biogeographic barrier is changing (Chown et al. 2015). The APF marks the convergent boundary between cold Antarctic water and warmer sub-Antarctic water, and has long been considered to prevent north-south dispersal in the Southern Ocean (reviewed by Clarke et al. 2005, Fraser et al. 2012). Our multi-year survey data provides evidence that rafting organisms readily cross the APF

Local, but not long-distance dispersal of penguin ticks between two sub-Antarctic islands

Advances in high throughput genomic approaches are enabling the accurate appraisal of movements of diverse species, previously considered intractable. The impact of long-distance dispersal and distribution changes on species interactions (such as host-parasite interactions) is of particular importance as attempts are made to project how ecosystems will shift under environmental change. The sub-Antarctic region, comprising isolated islands separated by hundreds to thousands of kilometres of open ocean, presents an ideal model system for studying long-distance dispersal, distribution, and ecosystem change. Here we used genomic methods to determine the extent of movement of penguin ticks (Ixodes uriae) among different host species, and among penguin colonies at small (within an island) and large (among islands separated by >6000 km) scales, in the sub-Antarctic region. Our results suggest that I. uriae ticks may be readily shared between distantly related penguin species with similar phenology, but indicate that – as inferred by previous research – ticks are less likely to be shared between flighted and non-flighted sea- birds. We also find evidence for small-scale movements of penguin ticks with their hosts, but no evidence for movements between islands separated by thousands of kilometers of open ocean. These inferred limitations to penguin tick movement could be the result of restricted host movements or the inability of penguin ticks to survive extended trips at sea. Our findings help elucidate parasite-host dynamics, with implications for host health and persistence in a region experiencing rapid environmental change.a Rutherford Discovery Fellowship (RDF-UOO1803). KLM was funded by the Shackleton Scholarship Fund, and the Australian National University and the Australian Government via an ANU University Research Scholarship

Contemporary habitat discontinuity and historic glacial ice drive genetic divergence in Chilean kelp

<p>Abstract</p> <p>Background</p> <p>South America's western coastline, extending in a near-straight line across some 35 latitudinal degrees, presents an elegant setting for assessing both contemporary and historic influences on cladogenesis in the marine environment. Southern bull-kelp (<it>Durvillaea antarctica</it>) has a broad distribution along much of the Chilean coast. This species represents an ideal model taxon for studies of coastal marine connectivity and of palaeoclimatic effects, as it grows only on exposed rocky coasts and is absent from beaches and ice-affected shores. We expected that, along the central Chilean coast, <it>D. antarctica </it>would show considerable phylogeographic structure as a consequence of the isolating effects of distance and habitat discontinuities. In contrast, we hypothesised that further south - throughout the region affected by the Patagonian Ice Sheet at the Last Glacial Maximum (LGM) - <it>D. antarctica </it>would show relatively little genetic structure, reflecting postglacial recolonisation.</p> <p>Results</p> <p>Mitochondrial (COI) and chloroplast (<it>rbc</it>L) DNA analyses of <it>D. antarctica </it>from 24 Chilean localities (164 individuals) revealed two deeply divergent (4.5 - 6.1% for COI, 1.4% for <it>rbc</it>L) clades from the centre and south of the country, with contrasting levels and patterns of genetic structure. Among populations from central Chile (32° - 44°S), substantial phylogeographic structure was evident across small spatial scales, and a significant isolation-by-distance effect was observed. Genetic disjunctions in this region appear to correspond to the presence of long beaches. In contrast to the genetic structure found among central Chilean populations, samples from the southern Chilean Patagonian region (49° - 56°S) were genetically homogeneous and identical to a haplotype recently found throughout the subantarctic region.</p> <p>Conclusions</p> <p>Southern (Patagonian) Chile has been recolonised by <it>D. antarctica </it>relatively recently, probably since the LGM. The inferred trans-oceanic ancestry of these Patagonian populations supports the notion that <it>D. antarctica </it>is capable of long-distance dispersal via rafting. In contrast, further north in central Chile, the correspondence of genetic disjunctions in <it>D. antarctica </it>with long beaches indicates that habitat discontinuity drives genetic isolation among established kelp populations. We conclude that rafting facilitates colonisation of unoccupied shores, but has limited potential to enhance gene-flow among established populations. Broadly, this study demonstrates that some taxa may be considered to have either high or low dispersal potential across different temporal and geographic scales.</p

Gall-forming protistan parasites infect southern bull kelp across the Southern Ocean, with prevalence increasing to the south

Protistan pathogens can have devastating effects on marine plants, yet the processes that affect their distributions and infection intensities are poorly understood. Species within the brown algal genus Durvillaea are major ecosystem engineers throughout the sub-Antarctic and cold-temperate Southern Hemisphere, and a newly described genus of protistan parasite, Maullinia, was recently found infecting D. antarctica in Chile. We set out to address 3 key questions. (1) Is there evidence for trans-oceanic dispersal of Maullinia? (2) Does Maullinia infect other Durvillaea species? (3) Does infection prevalence vary throughout the hosts' ranges? We sampled Maullinia on Durvillaea populations along coasts in Chile (D. antarctica, from 32 to 42 S: 8 sites), Australia (D. potatorum and D. amatheiae, from 36 to 38 S: 5 sites) and sub-Antarctic Marion Island (46 53' 47'' S, 3743' 32'' E). We used a genetic marker (18S rRNA) to verify the presence of Maullinia on Durvillaea at all sites and visual surveys of Maullinia galls to assess infection prevalence in Chile and Australia. We confirm that Maullinia infects Australian Durvillaea species, but our results indicate that each host species is parasitised by a different Maullinia lineage. Maullinia infection prevalence increased with latitude. Long-and short-distance dispersal events are inferred to have occurred based on genetic patterns. We conclude that Maullinia protists are broadly distributed and affect multiple host species, including at least 3 Durvillaea species (2 in Australia, and 1 in both Chile and Marion Island), and that environmental factors influence host susceptibility to infection.This project was funded by Fondecyt grant (CONICYT-FONDECYT 1131082), the Fenner School of Environment and Society at the Australian Nat - ional University and a PhD fellowship Beca CONICYTPCHA/DoctoradoNacional/2014-21140010 to B.A.L

Genetic affinities between trans-oceanic populations of non-buoyant macroalgae in the high latitudes of the Southern Hemisphere

Marine biologists and biogeographers have long been puzzled by apparently non-dispersive coastal taxa that nonetheless have extensive transoceanic distributions. We here carried out a broad-scale phylogeographic study to test whether two widespread Southern Hemisphere species of non-buoyant littoral macroalgae are capable of long-distance dispersal. Samples were collected from along the coasts of southern Chile, New Zealand and several subAntarctic islands, with the focus on high latitude populations in the path of the Antarctic Circumpolar Current or West Wind Drift. We targeted two widespread littoral macroalgal species: the brown alga Adenocystisutricularis (Ectocarpales, Heterokontophyta) and the red alga Bostrychiaintricata (Ceramiales, Rhodophyta). Phylogenetic analyses were performed using partial mitochondrial (COI), chloroplast (rbcL) and ribosomal nuclear (LSU / 28S) DNA sequence data. Numerous deeply-divergent clades were resolved across all markers in each of the target species, but close phylogenetic relationships - even shared haplotypes - were observed among some populations separated by large oceanic distances. Despite not being particularly buoyant, both Adenocystisutricularis and Bostrychiaintricata thus show genetic signatures of recent dispersal across vast oceanic distances, presumably by attachment to floating substrata such as wood or buoyant macroalgae.This work was funded by New Zealand Marsden contract 07-UOO-099, Department of Zoology and University of Otago Research grants to JMW and CIF; a Shackleton Scholarship to CIF; an Allan Wilson Centre for Molecular Ecology and Evolution postdoctoral grant to CIF; Australian Antarctic Division AAS project #2914

The genomic footprint of coastal earthquake uplift

Theory suggests that catastrophic earth-history events can drive rapid biological evolution, but empirical evidence for such processes is scarce. Destructive geological events such as earthquakes can represent large-scale natural experiments for inferring such evolutionary processes. We capitalized on a major prehistoric (800 yr BP) geological uplift event affecting a southern New Zealand coastline to test for the lasting genomic impacts of disturbance. Genome-wide analyses of three co-distributed keystone kelp taxa revealed that post-earthquake recolonization drove the evolution of novel, large-scale intertidal spatial genetic ‘sectors’ which are tightly linked to geological fault boundaries. Demographic simulations confirmed that, following widespread extirpation, parallel expansions into newly vacant habitats rapidly restructured genome-wide diversity. Interspecific differences in recolonization mode and tempo reflect differing ecological constraints relating to habitat choice and dispersal capacity among taxa. This study highlights the rapid and enduring evolutionary effects of catastrophic ecosystem disturbance and reveals the key role of range expansion in reshaping spatial genetic patterns

Evidence of plant and animal communities at exposed and subglacial (cave) geothermal sites in Antarctica

Geothermal areas, such as volcanoes, might have acted as glacial microrefugia for a wide range of species. The heavily glaciated but volcanically active Antarctic continent presents an ideal system for assessing this hypothesis. Ice-free terrain around volcanoes in Antarctica is, however, often restricted to small patches, whereas subglacial cave systems, formed by vented volcanic steam, can be extensive and interconnected. No observations of macrobiota have yet been made for subglacial geothermal environments in Antarctica, but these organisms are often patchily distributed and can be difficult to find. We carried out metabarcoding (eDNA) analyses of soil samples taken from exposed areas on three volcanoes in Victoria Land, and subglacial caves on Mount Erebus. We found evidence of numerous eukaryotic groups, including mosses, algae, arthropods, oligochaetes and nematodes, at both exposed and subglacial sites. Our findings support the notion that geothermal areas—including subglacial environments—can nurture biodiversity in glaciated regions