Influence of bioturbation on denitrification activity in Mediterranean coastal sediments:an in situ experimental approach

An in situ experiment was conducted in the French Mediterranean littoral (Gulf of Fos) from July 1993 to January 1994 using controls without macrofauna or natural sediments. After 1, 4 and 6 mo, sediment reworking and denitrification activities (natural and potential rates) were studied. The bacterial processes were stimulated by the bioturbating activity of the autochthonous infauna. The natural and potential denitrification rates were 160 and 280% higher, respectively, than in the controls. The increase of denitrification, occurring at different depths in the sediment with respect to time, was directly dependent on the macrofaunal activity

The influence of macrofaunal burrow spacing and diffusive scaling on sedimentary nitrification and denitrification: An experimental simulation and model approach

The influence of burrow spacing on nitrification and denitrification was simulated experimentally using sediment plugs of different thicknesses immersed in aerated seawater reservoirs. Different plug thicknesses mimic different distances between oxygenated burrow centers and produce similar changes in aerobic–anaerobic reaction balances as a function of diffusive transport scaling. The thicknesses used were roughly equivalent to transport scales (interburrow spacing) that could be produced by burrow abundances of ~400 to 50,000 m-2, depending on burrow lumen radii (e.g., 0.05–1 cm). Following the exposure of anoxic sediment plugs to aerated water, an efficient aerobic nitrification zone was established within the first ~2–3 millimeters of sediment. At pseudo-steady state, the thinnest plug (2 mm) simulating highest burrow density, was entirely oxic and the denitrification rate nil. Denitrification was stimulated in anoxic regions of the thicker plugs (5, 10, and 20 mm) compared to the initial value in experimental sediment. Maximum nitrification rates and the highest denitrification/nitrification ratio between oxic nitrification and adjacent denitrification zones occurred for the intermediate plug thickness of 5 mm. Of the oxic/anoxic composites, the thickest plug showed the least efficient coupling between nitrification/denitrification zones (lowest denitrification/nitrification ratio). Both the thickness of the oxic layer and the total net remineralization of dissolved inorganic N varied inversely with plug thickness. A set of diffusion–reaction models was formulated assuming a range of possible nitrification kinetic functions. All model forms predicted optimal nitrification–denitrification and ammonification–denitrification coupling with relative oxic–anoxic zonation scales comparable to intermediate plug thicknesses (5–6 mm). However, none of the commonly assumed kinetic forms for nitrification could produce the observed NO-3 profiles in detail, implying that natural sediment populations of nitrifiers may be less sensitive to O2 than laboratory strains. Our experimental and model results clearly show that rates of N remineralization and the balance between stimulation/inhibition of denitrification are highly dependent on sedimentary biogenic structure and the particular geometries of irrigated burrow distributions

Coupled anoxic nitrification/manganese reduction in marine sediments

Pore water and solid phase distributions of oxygen, manganese, and nitrogen from hemipelagic and shelf sediments sometimes indicate a close coupling between the manganese and nitrogen redox cycles. Reaction coupling must be sustained in part by biological reworking of Mn-oxide-rich surface sediments into underlying anoxic zones. Surface sediment from Long Island Sound (USA) was used in laboratory experiments to simulate such intermittent natural mixing processes and subsequent reaction evolution. Mixed sediment was incubated anoxically under either diffusively open (plugs) or closed conditions (jars). In closed anoxic incubations, pore water NO3 2 increased regularly to a maximum (up to 17 mM) after one to several days, and was subsequently depleted. Mn21 was produced simultaneously with NO3 2. NO2 2 was also clearly produced and subsequently reduced, with a formation-depletion pattern consistent with coupled nitrificationdenitrification in the anoxic sediment. Manipulative additions of Mn-oxides (5–10 mmol g21 net) demonstrated that net anoxic NO3 2 production correlated directly with initial Mn-oxide content. During initial net NO3 2 production there was no evidence for SO4 22 reduction. A direct correlation was also observed between anoxic nitrification rates and estimated sulfate reduction rates; the larger nitrification rates, the larger the eventual net sulfate reduction rates. Diffusively-open incubations using sediment plugs of four different thicknesses (2, 5, 10 and 20 mm) exposed to anoxic overlying water, also showed net production of pore water NO3 2 (;15–20 mM) despite the absence of NO3 2 in the overlying water for at least five days. In general, higher nitrate concentrations were maintained in the open relative to the closed incubations, due most likely to lower concentrations of dissolved reductants for NO3 2 in the open system. These experiments imply simultaneous coupling between the benthic nitrogen, manganese, and sulfur redox cycles, involving anoxic nitrification and sulfide oxidation to SO4 22. Anoxic nitrate production during Mn reduction indicates that nitrification and denitrification can occur simultaneously in subsurface sediments, without vertical stratification. The existence of anoxic nitrification implies new reaction pathways capable of increasing coupled sedimentary nitrificationdenitrification, particularly in bioturbated or physically mixed deposits

Influence of shellfish farming activities on nitrification, nitrate reduction to ammonium and denitrification at the water-sediment interface of the Thau lagoon, France

The seasonal patterns of nitrification, denitrification and dissimilatory ammonium production (DAP) rates were studied in the sediment of 2 stations in the Thau lagoon (south of France). The station ZA was located within the shellfish farming zone and thestation B was the reference site. A marked effect of shellfish farming on bacterial activities was observed. Spatial differences were associated with discrepancies in the organic content and the reduction state of sediments, i.e. highest reductive processes (denitrification and DAP) were noted in shellfish farming area, whereas the oxidative process (nitrification) was predominant outside the farming zone. At both stations, the DAP activity increased in September (autumn) concomitant with an increase of the C/N ratio in the sediment due to the sedimentation of the summer phytoplanktonic production. Nitrification and denitrification rates exhibited maxima in November (winter) corresponding to dissolved inorganic nitrogen inputs from the surrounding land. In the shellfish farming site, 98% of nitrate was reduced to NH4+ and 2% to N2O, showing that the most of the NO3- was reduced to ammonium and remained available for the ecosystem

Effects of population density on the sediment mixing induced by the gallery-diffusor Hediste (Nereis) diversicolor O.F. Müller, 1776

The aim of this work was to quantify the intensity of sediment mixing induced by the gallery-diffusor (functional bioturbation group) Hediste diversicolor as a function of density, using particles tracers (luminophores). In order to assess the impact of density on sediment reworking, a 1-D model was used to obtain sediment reworking coefficients such as Db (biodiffusion-like) and r (biotransport). Densities used in this experiment corresponded to population densities observed in the sampling area (Saint-Antoine Canal, Gulf of Fos, France): 144, 288, 577, 1153 indiv/m2. At first, results showed that neither luminophore maximum burying depth nor the more marked tracer accumulation areas were influenced by density. Thus density did not seem to have any influence on size of galleries or complexity of structure. Then, density-dependent relations with Db (biodiffusion-like mixing) and r (biotransport) were highlighted with an observed process intensity rate twice as high at highest worm density. On the other hand, Db and r per capita coefficients were negatively influenced by density. Db and r per capita at highest density were equal to ∼20% of individual Db and r obtained at the lowest density. Finally, this study showed the importance of density which appears to be a key parameter in the functioning of the sedimentary ecosystem

Comparison between the Nereis diversicolor and Nereis virens marine worms in the transformation of ingested hydrocarbons

A feeding experiment was conducted on the marine worm Nereis diversicolor to compare the fate of a hydrocarbon mixture during the gut passage in this species with the hydrocarbon breakdown process demonstrated for Nereis virens. Hydrocarbon dissolution/solubilization processes in the gut of N. diversicolor were found to have similar qualitative and quantitative importance in the hydrocarbon transformation as those observed in N. virens

Characterization of specificity of bacterial community structure within the burrow environment of the marine polychaete Hediste (Nereis) diversicolor

Bioturbation is known to stimulate microbial communities, especially in macrofaunal burrows where the abundance and activities of bacteria are increased. Until now, these microbial communities have been poorly characterized and an important ecological question remains: do burrow walls harbor similar or specific communities compared with anoxic and surface sediments? The bacterial community structure of coastal sediments inhabited by the polychaete worm Hediste diversicolor was investigated. Surface, burrow wall and anoxic sediments were collected at the Carteau beach (Gulf of Fos, Mediterranean Sea). Bacterial diversity was determined by analyzing small subunit ribosomal RNA (16S rRNA) sequences from three clone libraries (168, 179 and 129 sequences for the surface, burrow wall and anoxic sediments, respectively). Libraries revealed 306 different operational taxonomic units (OTUs) belonging to at least 15 bacterial phyla. Bioinformatic analyses and comparisons between the three clone libraries showed that the burrow walls harbored a specific bacterial community structure which differed from the surface and anoxic environments. More similarities were nevertheless found with the surface assemblage. Inside the burrow walls, the bacterial community was characterized by high biodiversity, which probably results from the biogeochemical heterogeneity of the burrow system

Hydrocarbon influence on denitrification in bioturbated Mediterranean coastal sediments

An in situ experiment has been carried out inbioturbated Mediterranean coastal marine sediments (Gulfof Fos) in order to study the influence of hydrocarbons ondenitrification after 1, 4 and 6 months. In theabsence of hydrocarbons in the control sediments, the presenceof macrofauna stimulated denitrificationby 160%. This stimulation is induced by sediment reworkingthat favours both direct NO-3 supply fromthe water column and the penetration of O{2}, which in turnstimulated nitrification, the other source ofNO-3 in sediment. The presence of hydrocarbons in theexperimental sediments either stimulated orinhibited the denitrification. The denitrification response tothe presence of hydrocarbon is dependent onthe quantity of matter buried by the macrofauna activity. Insmall quantities, the organic matter relatedto hydrocarbons 120% enhanced the denitrification compared tothe controls. On the other hand, whenburied hydrocarbon concentrations were higher (>100 mgsaturated hydrocarbon fraction kg-1 drysediment), the denitrification was inhibited.On the basis of the results obtained, a descriptive model ofthe patterns of denitrification in relation to the presence ofmacrofauna and the distribution of hydrocarbons in sediments is proposed

Preliminary Data on the Bioturbation Activity of Hediste Diversicolor (Polychaeta, Nereididae) from the Loire Estuary, France

The ragworm Hediste diversicolor (O. F. Müller, 1776) plays a key role in the estuarine water-sediment interface. This scientific project comes under the framework of the International network Nereis Park Experiment gathering 27 laboratories from all over the world. The experiments were carried out concurrently in spring 2007 using a common protocol. In the Loire estuary, the samples were collected in the intertidal zone of the Saint-Nazaire Bridge. During the field experiment, we estimated the surface area of the burrow walls (Sb) value varied from Sb = 0.26 m2.m-2 to 2.18 m2.m-2 (mean Sb = 0.75 m2.m-2), and the pumping rate (Pr) value from Pr = 0.9 l.d-1m-2 to 7.7 l.d-1 m-2 (mean value Pr = 2.7 l.d-1m-2). The density and the biomass of H. diversicolor populations largely controlled the amount of reworked sediment. In the laboratory, we estimated the pseudo-diffusive mixing, Db value varied from Db = 1.2 to 1.6 (mean Db = 1.5). The non-local transport (r) from the upper layers to the bottom of the tubes varied from r = 1 to 7.2 (mean r = 4.3). A positive relationship could be established between Db and the temperature while on the contrary a negative relationship could be established between the Db and biomass. It seems that small individuals are more efficient reworkers than big ones

Influence of various redox conditions on the degradation of microalgal triacylglycerols and fatty acids in marine sediments

Sediment cakes, supplemented with microalgal cells (Nannochloropsis salina), were incubated for 35 days under permanently oxic, oscillating (5d:5d changeover oxic/anoxic) and strictly anoxic conditions of oxygenation in diffusively ‘‘open’’ sedimentary systems. Total lipids (TLip) and triacylglycerols (TG) concentrations were monitored by thin layer chromatography-flame ionisation detection, whereas the concentrations of the main extractable (free+ester-bound) individual fatty acids (C16:0, C16:1, C18:1) were followed using gas chromatography-mass spectrometry. Under the three conditions of oxygenation, TOC, TLip and TG showed a sharp decrease in concentration during the early days of incubation and seemed to stabilise thereafter, defining an apparent non degradable fraction (GNR). The GNR content was systematically higher in the anoxic incubation than under the oxic and oscillating conditions. The ratio of the main hydrolysis products of TG versus TG [(Free fatty acids+Monoacylglycerols+1,2-Diacylglycerols)/TG], used as an indicator of the hydrolysis of TG, showed that the presence of oxygen in the sediments (oxic and oscillating conditions) stimulates the hydrolysis of TG and the subsequent degradation of their metabolites. Unlike TOC, TLip and TG, individual fatty acids (FA) showed a continuous concentration decrease until the end of the experiment, which was fitted with a simple first order model [G(t)=G0e_kt] to yield apparent degradation rate constants. The values observed under oscillating conditions (kFA=0.019 +/- 0.001 d_1) were intermediate to those observed during oxic (kFA=0.029 +/- 0.003 d_1) and anoxic (kFA=0.011 +/- 0.001 d_1) incubations, and no significant difference between individual FA could be observed. The production of saturated and monounsaturated C16 (and to a lesser extent C18) alkanols under oscillating and anoxic redox conditions suggested that (a part of) the dominant FA were reduced to the corresponding alcohols under anoxic conditions, following their release from acylglycerols