Lyman-alpha transfer in primordial hydrogen recombination

Cosmological constraints from the cosmic microwave background (CMB) anisotropies rely on accurate theoretical calculations of the cosmic recombination history. Recent work has emphasized the importance of radiative transfer calculations due to the high optical depth in the HI Lyman lines. Transfer in the Lyman-alpha line is dominated by true emission and absorption, Hubble expansion, and resonant scattering. Resonant scattering causes photons to diffuse in frequency due to random kicks from the thermal velocities of hydrogen atoms, and also to drift toward lower frequencies due to energy loss via atomic recoil. Past analyses of Lyman-alpha transfer during the recombination era have either considered a subset of these processes, ignored time dependence, or incorrectly assumed identical emission and absorption profiles. We present here a fully time-dependent radiative transfer calculation of the Lyman-alpha line including all of these processes, and compare it to previous results that ignored the resonant scattering. We find a faster recombination due to recoil enhancement of the Lyman-alpha escape rate, leading to a reduction in the free electron density of 0.45% at z=900. This results in an increase in the small-scale CMB power spectrum that is negligible for the current data but will be a 0.9 sigma correction for Planck. We discuss the reasons why we find a smaller correction than some other recent computations.Comment: 16 pages, 7 figures, matches PRD accepted version. Fixed bug in numerical transport code, resulting in slightly reduced effect on recombination histor

A New covert channel over RTP

In this thesis, we designed and implemented a new covert channel over the RTP protocol. The covert channel modifies the timestamp value in the RTP header to send its secret messages. The high frequency of RTP packets allows for a high bitrate covert channel, theoretically up to 350 bps. The broad use of RTP for multimedia applications, including VoIP, provides plentiful opportunities to use this channel. By using the RTP header, many of the challenges present for covert channels using the RTP payload are avoided. Using the reference implementation of this covert channel, bitrates of up to 325 bps were observed. Speed decreases on less reliable networks, though message delivery was flawless with up to 1% RTP packet loss. The channel is very difficult to detect due to expected variations in the timestamp field and the flexible nature of RTP

Operations in Support of USRJC

A copy of a reporthttps://digitalcommons.cwu.edu/sdfrancisco_documents/1066/thumbnail.jp

The effects of landscape modifications on the long-term persistence of animal populations

Background: The effects of landscape modifications on the long-term persistence of wild animal populations is of crucial importance to wildlife managers and conservation biologists, but obtaining experimental evidence using real landscapes is usually impossible. To circumvent this problem we used individual-based models (IBMs) of interacting animals in experimental modifications of a real Danish landscape. The models incorporate as much as possible of the behaviour and ecology of four species with contrasting life-history characteristics: skylark (Alauda arvensis), vole (Microtus agrestis), a ground beetle (Bembidion lampros) and a linyphiid spider (Erigone atra). This allows us to quantify the population implications of experimental modifications of landscape configuration and composition. Methodology/Principal Findings: Starting with a real agricultural landscape, we progressively reduced landscape complexity by (i) homogenizing habitat patch shapes, (ii) randomizing the locations of the patches, and (iii) randomizing the size of the patches. The first two steps increased landscape fragmentation. We assessed the effects of these manipulations on the long-term persistence of animal populations by measuring equilibrium population sizes and time to recovery after disturbance. Patch rearrangement and the presence of corridors had a large effect on the population dynamics of species whose local success depends on the surrounding terrain. Landscape modifications that reduced population sizes increased recovery times in the short-dispersing species, making small populations vulnerable to increasing disturbance. The species that were most strongly affected by large disturbances fluctuated little in population sizes in years when no perturbations took place. Significance: Traditional approaches to the management and conservation of populations use either classical methods of population analysis, which fail to adequately account for the spatial configurations of landscapes, or landscape ecology, which accounts for landscape structure but has difficulty predicting the dynamics of populations living in them. Here we show how realistic and replicable individual-based models can bridge the gap between non-spatial population theory and non-dynamic landscape ecology. A major strength of the approach is its ability to identify population vulnerabilities not detected by standard population viability analyses

Stitching of near-nulled subaperture measurements

A metrology system for measuring aspheric test objects by subaperture stitching. A wavefront-measuring gauge having a limited capture range of wavefront shapes collects partially overlapping subaperture measurements over the test object. A variable optical aberrator reshapes the measurement wavefront with between a limited number of the measurements to maintain the measurement wavefront within the capture range of the wavefront-measuring gauge. Various error compensators are incorporated into a stitching operation to manage residual errors associated with the use of the variable optical aberrator

Oswaldo: A Semantic Web Enabled Approach for Identifying Open Source License Violations

Open source license violations are numerous, multifaceted, and pose significant risk to developers and companies in the form of litigation, sometimes resulting in millions in dollars in damages or settlements. Free/Libre and Open Source Licenses utilize copyright law and are written in legalese, which is often outside the scope of a developer’s expertise. Software Engineers commit violations of these licenses’ terms and conditions easily and often unknowingly. Consequently, increased knowledge, better tools, and sound processes to detect and prevent license violations are extremely important. This work is an investigation in the types of potential license violations that are committed, through direct and transitive dependency hierarchies in hundreds of thousands of real-world software projects. This thesis contributes a novel approach, entitled Oswaldo, that defines and detects three types of license conflicts: Type 1 Simple Violation, Type 2 Embedded Violations, Type 3 Compound Violations. Unidirectional compatibility/incompatibility relationships of major licenses are modelled. Ontologies and Linked Data are advantageously exploited to detect transitive violation Types 2 and 3, as well as the direct violation Type 1. This thesis also reports initial evaluations of these three types of license violations found in the Maven repository

A Hierarchical Taxonomy of Psychopathology (HiTOP) Primer for Mental Health Researchers

Mental health research is at an important crossroads as the field seeks more reliable and valid phenotypes to study. Dimensional approaches to quantifying mental illness operate outside the confines of traditional categorical diagnoses, and they are gaining traction as a way to advance research on the causes and consequences of mental illness. The Hierarchical Taxonomy of Psychopathology (HiTOP) is a leading dimensional research paradigm that synthesizes decades of data on the major dimensions of psychological disorders. In this article, we demonstrate how to use the HiTOP model to formulate and test research questions through a series of tutorials. To boost accessibility, data and annotated code for each tutorial are included at OSF ( https://osf.io/8myzw ). After presenting the tutorials, we outline how investigators can use these ideas and tools to generate new insights in their own substantive research programs

Pyogranuloma caused by Mycobacterium asiaticum infection in a steer

In 2003, a steer carcass was condemned at a Central Queensland abattoir because of metastatic tumors. In addition, a granulomatous lesion was found in the mediastinal lymph node. Histological examination showed this to be a pyogranuloma, typically associated with Rhodococcus or the Nocardia/Streptomyces group. However, in this case, the only etiological agent was an acid-fast bacillus, which would normally be associated with a more fibrous lesion. A number of nucleic acid–based techniques were used, and the isolate was identified as Mycobacterium asiaticum. This organism is a rarely encountered opportunistic pathogen of humans, associated with subtropical climates. This is the first report of this organism causing infection in cattle. The similarities between this case and cases of human disease are discussed

Fostering collaborative research for rare genetic disease: The example of Niemann-Pick type C disease

Rare disease represents one of the most significant issues facing the medical community and health care providers worldwide, yet the majority of these disorders never emerge from their obscurity, drawing little attention from the medical community or the pharmaceutical industry. The challenge therefore is how best to mobilize rare disease stakeholders to enhance basic, translational and clinical research to advance understanding of pathogenesis and accelerate therapy development. Here we describe a rare, fatal brain disorder known as Niemann-Pick type C (NPC) and an innovative research collaborative known as Support of Accelerated Research for NPC (SOAR-NPC) which illustrates one pathway through which knowledge of a rare disease and its possible treatments are being successfully advanced. Use of the “SOAR” mechanism, we believe, offers a blueprint for similar advancement for many other rare disorders