Methods for the recognition of geological weakness zones and other surface discontinuities caused by underground mining in Carboniferous terrain

Since March 1992 the British Geological Survey (BGS) has collaborated in a CEC part-funded project under the leadership of Dr Clasen of Saarberg, Saarbrueken, Germany. The aim of this project was to determine the most efficient combination of surface geophysical techniques to be used in combination with airborne optical scanning data for the routine detection of shallow faults. Such features, when reactivated following undermining, may become the locii of damaging subsidence, but where they can be traced in advance of mining operations then remedial measures (such as underpinning etc) may be undertaken. This final report outlines the geophysical methods applied and describes our most significant results. Conclusions are drawn concerning the relative efficiencies of each technique and possible complementary applications

Rapid non-contacting resistivity logging of core

We demonstrate a non-contact approach to whole-core and split-core resistivity measurements, imaging a 15 mm-thick, dipping, conductive layer, producing a continuous log of the whole core and enabling the development of a framework to allow representative plugs to be taken, for example. Applications include mapping subtle changes in grain fabric (e.g. grain shape) caused by variable sedimentation rates, for example, as well as the well-known dependencies on porosity and water saturation. The method operates at relatively low frequencies (i.e. low induction numbers), needing highly sensitive coil pairs to provide resistivity measurements at the desired resolution. A four-coil arrangement of two pairs of transmitter and receiver coils is used to stabilize the measurement. One ‘coil pair’ acts as a control, enabling the effects of local environmental variations, which can be considerable, to be removed from the measurement at source. Comparing our non-contact approach and independent traditional ‘galvanic’ resistivity measurements indicates that the non-contact measurements are directly proportional to the reciprocal of the sample resistivity (i.e. conductivity). The depth of investigation is discussed in terms of both theory and practical measurements, and the response of the technique to a variety of synthetic ‘structures’ is presented. We demonstrate the potential of the technique for rapid electrical imaging of core and present a whole-core image of a dipping layer with azimuthal discrimination at a resolution of the order of 10 mm. Consequently, the technique could be used to investigate different depths within the core, in agreement with theoretical predictions

Natural and anthropogenic lead in sediments of the Rotorua lakes, New Zealand

Global atmospheric sources of lead have increased more than 100-fold over the past century as a result of deforestation, coal combustion, ore smelting and leaded petroleum. Lead compounds generally accumulate in depositional areas across the globe where, due to low solubility and relative freedom from microbial degradation, the history of their inputs is preserved. In lakes there is rapid deposition and often little bioturbation of lead, resulting in an excellent depositional history of changes in both natural and anthropogenic sources. The objective of this study was to use sediments from a regionally bounded set of lakes to provide an indication of the rates of environmental inputs of lead whilst taking into account differences of trophic state and lead exposure between lakes. Intact sediment gravity cores were collected from 13 Rotorua lakes in North Island of New Zealand between March 2006 and January 2007. Cores penetrated sediments to a depth of 16–30 cm and contained volcanic tephra from the 1886 AD Tarawera eruption. The upper depth of the Tarawera tephra enabled prescription of a date for the associated depth in the core (120 years). Each core showed a sub-surface peak in lead concentration above the Tarawera tephra which was contemporaneous with the peak use of lead alkyl as a petroleum additive in New Zealand. An 8 m piston core was taken in the largest of the lakes, Lake Rotorua, in March 2007. The lake is antipodal to the pre-industrial sources of atmospheric lead but still shows increasing lead concentrations from <2 up to 3.5 μg g−1 between the Whakatane eruption (5530 ± 60 cal. yr BP) and the Tarawera eruption. Peaks in lead concentration in Lake Rotorua are associated with volcanic tephras, but are small compared with those arising from recent anthropogenic-derived lead deposition. Our results show that diagenetic processes associated with iron, manganese and sulfate oxidation-reduction, and sulfide precipitation, act to smooth distributions of lead from anthropogenic sources in the lake sediments. The extent of this smoothing can be related to changes in sulfate availability and reduction in sulfide driven by differences in trophic status amongst the lakes. Greatest lead mobilisation occurs in mesotrophic lakes during seasonal anoxia as iron and manganese are released to the porewater, allowing upward migration of lead towards the sediment–water interface. This lead mobilisation can only occur if sulfides are not present. The sub-surface peak in lead concentrations in lake sediments ascribed to lead alkyl in petroleum persists despite the diagenetic processes acting to disperse lead within the sediments and into the overlying water

A non-contacting resistivity imaging method for characterizing whole round core while in its liner

Recent laboratory experimentation has shown that non-contacting whole-core resistivity imaging, with azimuthal discrimination, is feasible. It has shown the need for very sensitive coil pairs in order to provide resistivity measurements at the desired resolution. Independent high-resolution 'galvanic' resistivity estimations show the 'non-contacting' measurements to be directly proportional to the resistivity of core samples. The response of the technique to a variety of synthetic 'structures' is presented. A whole-core image of a dipping layer is used to demonstrate the three dimensional response of the technique and to show that the resolution of the measurements is of the order of 10mm. Experiments are described which show that the technique is capable of investigating to different depths within the whole round core. The results agree with theoretical predictions and indicate that the technique has the potential to assess invasion near the surface of the core. The technique is intrinsically safe and has the potential to be packaged in a form that would be suitable for whole-core imaging at the well site, or laboratory, without taking core from their liners. Thus it is possible to acquire information crucial for core selection, in addition to acquiring resistivity data at a resolution not too far removed from that of the downhole imaging tools

Whole-genome sequencing reveals host factors underlying critical COVID-19

Critical COVID-19 is caused by immune-mediated inflammatory lung injury. Host genetic variation influences the development of illness requiring critical care1 or hospitalization2,3,4 after infection with SARS-CoV-2. The GenOMICC (Genetics of Mortality in Critical Care) study enables the comparison of genomes from individuals who are critically ill with those of population controls to find underlying disease mechanisms. Here we use whole-genome sequencing in 7,491 critically ill individuals compared with 48,400 controls to discover and replicate 23 independent variants that significantly predispose to critical COVID-19. We identify 16 new independent associations, including variants within genes that are involved in interferon signalling (IL10RB and PLSCR1), leucocyte differentiation (BCL11A) and blood-type antigen secretor status (FUT2). Using transcriptome-wide association and colocalization to infer the effect of gene expression on disease severity, we find evidence that implicates multiple genes—including reduced expression of a membrane flippase (ATP11A), and increased expression of a mucin (MUC1)—in critical disease. Mendelian randomization provides evidence in support of causal roles for myeloid cell adhesion molecules (SELE, ICAM5 and CD209) and the coagulation factor F8, all of which are potentially druggable targets. Our results are broadly consistent with a multi-component model of COVID-19 pathophysiology, in which at least two distinct mechanisms can predispose to life-threatening disease: failure to control viral replication; or an enhanced tendency towards pulmonary inflammation and intravascular coagulation. We show that comparison between cases of critical illness and population controls is highly efficient for the detection of therapeutically relevant mechanisms of disease

Engineering geological and geophysical investigations of a slope failure at Edinburgh Castle, Scotland

Edinburgh Castle is one of Scotlands most important heritage sites. It was built on a classic crag and tail structure where the crag consists of columnar jointed basalt and the tail of sediments protected from glacial erosion by the crag. In 1997 apparent instability was observed on the southern side of the tail. A shallow slope failure was proved to have taken place within saturated, layered, cohesive to non-cohesive, loose to dense heterogeneous fill on a slope of 44°. The date of the initial failure is not known, but is likely to have taken place over a period of many years, since at least the 1950s. Remediation works were subsequently undertaken to stabilise the slope, consisting mainly of the installation of soil nails, a bi-axial geo-grid and minor filling to mitigate the effects of the ground movements and to facilitate repair of the retaining wall

Effects of locally rare taxa on the precision and sensitivity of RIVPACS bioassessment of freshwaters

1. An overall aim in freshwater bioassessment is to use biological methods, metrics and forms of indices which are precise, in that they give repeatable results between replicate samples, but which are also sensitive to changes in environmental impacts and stresses. Here we studied the effects of excluding taxa with site-specific River Invertebrate Prediction and Classification System (RIVPACS)-type model expected probabilities less than (or equal to) a threshold Pt (0.0, 0.1, 0.2,…,0.9) on the value, precision and power to detect biological effects of environmental stress using the observed to expected ratios (O/E) of biotic indices used to assess the ecological status of U.K. river sites. 2. Amongst the 614 high quality GB RIVPACS reference sites, excluding taxa with low expected probabilities of occurrence gave less total variation (i.e. lower SD) in the estimates O/E for number of taxa (O/ETAXA) and the average score per taxon (O/EASPT). 3. A separate analysis of a replicated sampling study of sites from a wide range of physical types and qualities revealed that sampling variances in O/E for reference condition sites decreased as more locally rare taxa were excluded (but only up to Pt = 0.5 for O/EASPT). However, for moderately impacted and poor quality sites, estimates of both O/ETAXA and O/EASPT based on all (Pt = 0.0) or most taxa (i.e. Pt ≤ 0.3) had lower sampling variances and were more precise. 4. Within a very large independent set of test sites with a wide range of perceived levels of environmental stress, increasing the threshold Pt led to systematic compression of the realised O/E scale towards unity. Specifically, with increasing threshold, O/E values >1 are on average reduced, while O/E values <1 have a tendency to be higher and closer to unity (with the exception of O/EASPT for the most severely stressed sites). 5. Accuracy and statistical power to detect environmental stress (measured by the percentage of stressed sites with O/E below the lower 10-percentile value for reference sites) was very similar using O/ETAXA for Pt up to 0.7. Using O/EASPT, power to detect overall general stress decreased slowly as Pt was increased; the rate of fall in power was slightly faster when restricted to sites subject to moderate or severe stress from organic inputs. 6. Taxa which are more sensitive to (organic) stresses [i.e. have high Biological Monitoring Working Party (BMWP) scores] tend to be naturally less widespread (i.e. amongst reference sites) and thus were found to have considerably lower average site-specific expected probabilities; this may explain why the use of higher thresholds Pt can exclude more such sensitive taxa and lead to underestimation of the extent of impacts. 7. The standard U.K. RIVPACS sampling and sample processing procedures aim to identify all taxa within a sample. This may lead to a longer distribution tail of rarer (low probability) taxa than sampling methods based on a fixed count subsample and influence the practical effects of excluding rare taxa with low expected probabilities from bioassessments

High-resolution petrophysical characterization of samples from an aeolian sandstone : the Permian Penrith sandstone of NW England

The Penrith Sandstone is an orange/red, mainly homogeneous, friable rock made up of well-rounded, highly spherical quartz grains, often showing euhedral overgrowths of quartz. Sandstone samples from Stoneraise Quarry, NW England, exhibit a remarkable degree of rounding and very high sphericity, along with frosted textures typical of aeolian deposits. Chemically, the rock is predominantly SiO2 (>95%), with no evidence of carbonate cements. Quartz predominates with a small proportion (10%) of feldspar. The grain size across heterogeneous zones varies from very fine (100 µm) to coarse sand (700 µm). There is no evidence of the presence of clay minerals. Petrophysically, based on the measurements made in this study, the Penrith Sandstone is a typical clean sandstone characterized by moderate porosity (12%) and core-plug permeability (10–14–10–12 m2), and Archie ‘m’ exponents between 1.90 and 1.91, suggesting a reasonably clean ‘Archie’ rock with no excess conductivity associated with clays or bound water. Capillary pressure curves for four samples demonstrate unimodal pore-size distributions with a single modal range that varies between 25–50 and 70–80 µm. Because of the relative simplicity of its petrophysics, the sandstone is thus potentially very useful in fundamental studies, and also in the trialling of new techniques. We use imaging techniques to investigate the degree of heterogeneity and the fabric of the Penrith Sandstone. Conventional optical images are complemented by electrical resistivity, porosity and mini-permeametry images. These two-dimensional maps of resolution of approximately 5 mm show a spatial similarity determined by the rock fabric. The detailed images show a wider degree of variation and heterogeneity than the plug-averaged values. The success of the resistivity imaging method suggests that the technique could be used in deriving correlations that could be used to interpret borehole resistivity imaging logs. However, in the present study, correlations of property values derived from the imaging do show considerable scatter: this suggests that heterogeneity even below the scale of the imaging is also important, a conclusion supported by thin-section and electronmicroscope data