1,675 research outputs found
The 5' untranslated region of the I factor, a long interspersed nuclear element-like retrotransposon of Drosophila melanogaster, contains an internal promoter and sequences that regulate expression
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Supporting Student Knowledge Using Formative Assessment and Universal Design for Learning Expression
This article demonstrates an approach for teachers to use outcomes from activities using the universal design for learning expression principle to evaluate student knowledge in content areas. Based on the student’s level of explanation using a variety of expression methods, teachers can determine whether students need additional support for re-teaching a concept or whether students are ready for additional practice or challenge. Various levels of technology can be used for formatively assessing student understanding, from no technology (e.g., paper and pencil) to mid- or high-technology tools found in most classrooms, including computers and tablets
Identification of Novel Cetacean Poxviruses in Cetaceans Stranded in South West England
Poxvirus infections in marine mammals have been mainly reported through their clinical lesions
and electron microscopy (EM). Poxvirus particles in association with such lesions
have been demonstrated by EM and were previously classified as two new viruses, cetacean
poxvirus 1 (CePV-1) and cetacean poxvirus 2 (CePV-2). In this study, epidermal pox
lesions in cetaceans stranded in South West England (Cornwall) between 2008 and 2012
were investigated by electron microscopy and molecular analysis. PCR and sequencing of
a highly conserved region within the viral DNA polymerase gene ruled out both parapoxand
orthopoxviruses. Moreover, phylogenetic analysis of the PCR product clustered the sequences
with those previously described as cetacean poxviruses. However, taking the
close genetic distance of this gene fragment across the family of poxviridae into account, it
is reasonable to postulate further, novel cetacean poxvirus species. The nucleotide similarity
within each cluster (tentative species) detected ranged from 98.6% to 100%, whilst the
similarity between the clusters was no more than 95%. The detection of several species of
poxvirus in different cetacean species confirms the likelihood of a heterogeneous cetacean
poxvirus genus, comparable to the heterogeneity observed in other poxvirus genera
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Laboratory and field studies related to radionuclide migration at the Nevada Test Site October 1, 1998-September 30, 1999
In this report the author describes his research in FY 1999 at the Nevada Test Site regarding the movement of radionuclides in groundwater. This work is funded by the US Department of Energy/Nevada Operations Office through their Defense Programs and Environmental Restorations divisions. Significant accomplishments include upgrading a spectrometer used to characterize groundwater colloids, acquisition of a probe to allow in situ measurement of groundwater parameters, and purchase of pumps for use in small-diameter access tubing. He collected water samples from a number of nuclear test sites during the past year. Samples from the chimney horizon at the Camembert site show that only volatile radionuclides are present there, as expected. Groundwater from the cavity region at the Cheshire site shows evidence of fission product leaching or desorption from melt glass or rock surfaces. Colloids present in this water were found to be remarkably stable during storage for many years. The colloid content of groundwater at the Cambric site and at UE-5n was found to be low relative to that in groundwater on Pahute Mesa. This, coupled with the apparent lack of groundwater flow in the alluvial rock at the Cambric site, suggests that radionuclide movement underground in this area is relatively minimal. He continued the yearly monitoring of the thermally hot cavity fluids at the Almendro site. He concludes this report by listing documents reviewed and presentations and publications generated by the program
Colonic Gene Expression and Fecal Microbiota in Diarrhea-predominant Irritable Bowel Syndrome : Increased Toll-like Receptor 4 but Minimal Inflammation and no Response to Mesalazine
Background/Aims Diarrhea-predominant irritable bowel syndrome (IBS-D) has been previously associated with evidence of immune activation and altered microbiota. Our aim is to assess the effect of the anti-inflammatory agent, mesalazine, on inflammatory gene expression and microbiota composition in IBS-D. Methods We studied a subset of patients (n = 43) from a previously published 12-week radomized placebo-controlled trial of mesalazine. Mucosal biopsies were assessed by immunohistochemistry and reverse transcription-polymerase chain reaction for a range of markers of inflammation, altered permeability, and sensory receptors including Toll-like receptors (TLRs) at randomization after treatment. All biopsy data were compared to 21 healthy controls. Patient's stool microbiota composition was analysed through 16S ribosomal RNA sequencing. Results We found no evidence of increased immune activation compared to healthy controls. However, we did find increased expression of receptors in both sensory pathways and innate immune response including TLR4. Higher TLR4 expression was associated with greater urgency. TLR4 expression correlated strongly with the expression of the receptors bradykinin receptor B2, chemerin chemokine-like receptor 1, and transient receptor potential cation channel, subfamily A, member 1 as well as TLR4's downstream adaptor myeloid differentiation factor 88. Mesalazine had minimal effect on either gene expression or microbiota composition. Conclusions Biopsies from a well-characterized IBS-D cohort showed no substantial inflammation. Mesalazine has little effect on gene expression and its previous reported effect on fecal microbiota associated with much greater inflammation found in inflammatory bowel diseases is likely secondary to reduced inflammation. Increased expression of TLR4 and correlated receptors in IBS may mediate a general increase in sensitivity to external stimuli, particularly those that signal via the TLR system.Peer reviewe
Glaciological and marine geological controls on terminus dynamics of Hubbard Glacier, southeast Alaska
An edited version of this paper was published by AGU. Copyright (2015) American Geophysical Union.Hubbard Glacier, located in southeast Alaska, is the world's largest nonpolar tidewater glacier. It has been steadily advancing since it was first mapped in 1895; occasionally, the advance creates an ice or sediment dam that blocks a tributary fjord (Russell Fiord). The sustained advance raises the probability of long-term closure in the near future, which will strongly impact the ecosystem of Russell Fiord and the nearby community of Yakutat. Here, we examine a 43 year record of flow speeds and terminus position to understand the large-scale dynamics of Hubbard Glacier. Our long-term record shows that the rate of terminus advance has increased slightly since 1895, with the exception of a slowed advance between approximately 1972 and 1984. The short-lived closure events in 1986 and 2002 were not initiated by perturbations in ice velocity or environmental forcings but were likely due to fluctuations in sedimentation patterns at the terminus. This study points to the significance of a coupled system where short-term velocity fluctuations and morainal shoal development control tidewater glacier terminus position
Differential Expression of the Multigene Family Encoding the Soybean Mitochondrial Alternative Oxidase
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