Spatial models generated by nested stochastic partial differential equations, with an application to global ozone mapping

A new class of stochastic field models is constructed using nested stochastic partial differential equations (SPDEs). The model class is computationally efficient, applicable to data on general smooth manifolds, and includes both the Gaussian Mat\'{e}rn fields and a wide family of fields with oscillating covariance functions. Nonstationary covariance models are obtained by spatially varying the parameters in the SPDEs, and the model parameters are estimated using direct numerical optimization, which is more efficient than standard Markov Chain Monte Carlo procedures. The model class is used to estimate daily ozone maps using a large data set of spatially irregular global total column ozone data.Comment: Published in at http://dx.doi.org/10.1214/10-AOAS383 the Annals of Applied Statistics (http://www.imstat.org/aoas/) by the Institute of Mathematical Statistics (http://www.imstat.org

Quantifying the uncertainty of contour maps

Contour maps are widely used to display estimates of spatial fields. Instead of showing the estimated field, a contour map only shows a fixed number of contour lines for different levels. However, despite the ubiquitous use of these maps, the uncertainty associated with them has been given a surprisingly small amount of attention. We derive measures of the statistical uncertainty, or quality, of contour maps, and use these to decide an appropriate number of contour lines, that relates to the uncertainty in the estimated spatial field. For practical use in geostatistics and medical imaging, computational methods are constructed, that can be applied to Gaussian Markov random fields, and in particular be used in combination with integrated nested Laplace approximations for latent Gaussian models. The methods are demonstrated on simulated data and an application to temperature estimation is presented

Approximation of bayesian Hawkes process models with Inlabru

Hawkes process are very popular mathematical tools for modelling phenomena exhibiting a \textit{self-exciting} or \textit{self-correcting} behaviour. Typical examples are earthquakes occurrence, wild-fires, drought, capture-recapture, crime violence, trade exchange, and social network activity. The widespread use of Hawkes process in different fields calls for fast, reproducible, reliable, easy-to-code techniques to implement such models. We offer a technique to perform approximate Bayesian inference of Hawkes process parameters based on the use of the R-package \inlabru. The \inlabru R-package, in turn, relies on the INLA methodology to approximate the posterior of the parameters. Our Hawkes process approximation is based on a decomposition of the log-likelihood in three parts, which are linearly approximated separately. The linear approximation is performed with respect to the mode of the parameters' posterior distribution, which is determined with an iterative gradient-based method. The approximation of the posterior parameters is therefore deterministic, ensuring full reproducibility of the results. The proposed technique only requires the user to provide the functions to calculate the different parts of the decomposed likelihood, which are internally linearly approximated by the R-package \inlabru. We provide a comparison with the \bayesianETAS R-package which is based on an MCMC method. The two techniques provide similar results but our approach requires two to ten times less computational time to converge, depending on the amount of data.Comment: 2o pages, 7 figures, 5 table