Constancy and change in marine predator diets across a shift in oceanographic conditions in the Northern California Current

Variable ocean conditions can greatly impact prey assemblages and predator foraging in marine ecosystems. Our goal was to better understand how a change in ocean conditions influenced dietary niche overlap among a suite of midtrophic-level predators. We examined the diets of three fishes and one seabird off central Oregon during two boreal summer upwelling periods with contrasting El Niño (2010) and La Niña (2011) conditions. We found greater niche specialization during El Niño and increased niche overlap during La Niña in both the nekton and micronekton diet components, especially in the larger, more offshore predators. However, only the two smaller, more nearshore predators exhibited interannual variation in diet composition. Concurrent trawl surveys confirmed that changes in components of predator diets reflected changes in the prey community. Using multiple predators across diverse taxa and life histories provided a comprehensive understanding of food-web dynamics during changing ocean conditions

Expanding the diversity of mycobacteriophages: insights into genome architecture and evolution.

Mycobacteriophages are viruses that infect mycobacterial hosts such as Mycobacterium smegmatis and Mycobacterium tuberculosis. All mycobacteriophages characterized to date are dsDNA tailed phages, and have either siphoviral or myoviral morphotypes. However, their genetic diversity is considerable, and although sixty-two genomes have been sequenced and comparatively analyzed, these likely represent only a small portion of the diversity of the mycobacteriophage population at large. Here we report the isolation, sequencing and comparative genomic analysis of 18 new mycobacteriophages isolated from geographically distinct locations within the United States. Although no clear correlation between location and genome type can be discerned, these genomes expand our knowledge of mycobacteriophage diversity and enhance our understanding of the roles of mobile elements in viral evolution. Expansion of the number of mycobacteriophages grouped within Cluster A provides insights into the basis of immune specificity in these temperate phages, and we also describe a novel example of apparent immunity theft. The isolation and genomic analysis of bacteriophages by freshman college students provides an example of an authentic research experience for novice scientists

Expression of wnt and frizzled genes during early sea star development.

<p>The Wnt signaling pathway is highly conserved across metazoa and has pleiotropic functions in the development of many animals. Binding of a secreted Wnt ligand to its Frizzled (Fz) receptor activates Dishevelled, which then drives one of three major signaling cascades, canonical (β-catenin), calcium, or planar cell polarity signaling. These pathways have distinct developmental effects and function in different processes in different organisms. Here we report the expression of six wnt and three fz genes during embryogenesis of the sea star, Patiria miniata, as a first step in uncovering the roles of Wnt signaling in the development of this organism. wnt3, wnt4, wnt8, and wnt16 are expressed in nested domains in the endoderm and lateral ectoderm from blastula through late gastrula stages; wnt2 and wnt5 are expressed in the mesoderm and anterior endoderm. Expression of different fz paralogs is detected in the mesoderm; posterior endoderm and ectoderm; and anterior ectoderm. Taken together, this suggests that Wnt signaling can occur throughout most of the embryo and may therefore play multiple roles during sea star development.</p

GladicsAmandaCEOASConstancyChangeMarine_SupplementalMaterials.zip

Variable ocean conditions can greatly impact prey assemblages and predator foraging in marine ecosystems. Our goal was to better understand how a change in ocean conditions influenced dietary niche overlap among a suite of midtrophic-level predators. We examined the diets of three fishes and one seabird off central Oregon during two boreal summer upwelling periods with contrasting El Niño (2010) and La Niña (2011) conditions. We found greater niche specialization during El Niño and increased niche overlap during La Niña in both the nekton and micronekton diet components, especially in the larger, more offshore predators. However, only the two smaller, more nearshore predators exhibited interannual variation in diet composition. Concurrent trawl surveys confirmed that changes in components of predator diets reflected changes in the prey community. Using multiple predators across diverse taxa and life histories provided a comprehensive understanding of food-web dynamics during changing ocean conditions

GladicsAmandaCEOASConstancyChangeMarine.pdf

Variable ocean conditions can greatly impact prey assemblages and predator foraging in marine ecosystems. Our goal was to better understand how a change in ocean conditions influenced dietary niche overlap among a suite of midtrophic-level predators. We examined the diets of three fishes and one seabird off central Oregon during two boreal summer upwelling periods with contrasting El Niño (2010) and La Niña (2011) conditions. We found greater niche specialization during El Niño and increased niche overlap during La Niña in both the nekton and micronekton diet components, especially in the larger, more offshore predators. However, only the two smaller, more nearshore predators exhibited interannual variation in diet composition. Concurrent trawl surveys confirmed that changes in components of predator diets reflected changes in the prey community. Using multiple predators across diverse taxa and life histories provided a comprehensive understanding of food-web dynamics during changing ocean conditions

Expanding the diversity of mycobacteriophages: insights into genome architecture and evolution.

Mycobacteriophages are viruses that infect mycobacterial hosts such as Mycobacterium smegmatis and Mycobacterium tuberculosis. All mycobacteriophages characterized to date are dsDNA tailed phages, and have either siphoviral or myoviral morphotypes. However, their genetic diversity is considerable, and although sixty-two genomes have been sequenced and comparatively analyzed, these likely represent only a small portion of the diversity of the mycobacteriophage population at large. Here we report the isolation, sequencing and comparative genomic analysis of 18 new mycobacteriophages isolated from geographically distinct locations within the United States. Although no clear correlation between location and genome type can be discerned, these genomes expand our knowledge of mycobacteriophage diversity and enhance our understanding of the roles of mobile elements in viral evolution. Expansion of the number of mycobacteriophages grouped within Cluster A provides insights into the basis of immune specificity in these temperate phages, and we also describe a novel example of apparent immunity theft. The isolation and genomic analysis of bacteriophages by freshman college students provides an example of an authentic research experience for novice scientists.</p

Expanding the diversity of mycobacteriophages: insights into genome architecture and evolution.

Mycobacteriophages are viruses that infect mycobacterial hosts such as Mycobacterium smegmatis and Mycobacterium tuberculosis. All mycobacteriophages characterized to date are dsDNA tailed phages, and have either siphoviral or myoviral morphotypes. However, their genetic diversity is considerable, and although sixty-two genomes have been sequenced and comparatively analyzed, these likely represent only a small portion of the diversity of the mycobacteriophage population at large. Here we report the isolation, sequencing and comparative genomic analysis of 18 new mycobacteriophages isolated from geographically distinct locations within the United States. Although no clear correlation between location and genome type can be discerned, these genomes expand our knowledge of mycobacteriophage diversity and enhance our understanding of the roles of mobile elements in viral evolution. Expansion of the number of mycobacteriophages grouped within Cluster A provides insights into the basis of immune specificity in these temperate phages, and we also describe a novel example of apparent immunity theft. The isolation and genomic analysis of bacteriophages by freshman college students provides an example of an authentic research experience for novice scientists

Expanding the diversity of mycobacteriophages: insights into genome architecture and evolution.

Mycobacteriophages are viruses that infect mycobacterial hosts such as Mycobacterium smegmatis and Mycobacterium tuberculosis. All mycobacteriophages characterized to date are dsDNA tailed phages, and have either siphoviral or myoviral morphotypes. However, their genetic diversity is considerable, and although sixty-two genomes have been sequenced and comparatively analyzed, these likely represent only a small portion of the diversity of the mycobacteriophage population at large. Here we report the isolation, sequencing and comparative genomic analysis of 18 new mycobacteriophages isolated from geographically distinct locations within the United States. Although no clear correlation between location and genome type can be discerned, these genomes expand our knowledge of mycobacteriophage diversity and enhance our understanding of the roles of mobile elements in viral evolution. Expansion of the number of mycobacteriophages grouped within Cluster A provides insights into the basis of immune specificity in these temperate phages, and we also describe a novel example of apparent immunity theft. The isolation and genomic analysis of bacteriophages by freshman college students provides an example of an authentic research experience for novice scientists