British Association for Biological Anthropology and Osteoarchaeology: Equality, Diversity and Inclusion Race Equality Review

Racism continues to be widespread, subtle and often ignored or selectively attended to within organisations. This review sought to evaluate the British Association for Biological Anthropology and Osteoarchaeology (BABAO)’s existing race equality practices, to further support its movement towards becoming an antiracist organisation. The review arose from a commitment by BABAO to interrogate its current structures and redress problematic cultures within the organisation, following a member of colour expressing concerns. In itself, this provides an encouraging example both of the reflexivity of the organisation and the power of a single voice. Through focus groups and surveys, insights were gained with regards to the organisational culture and in response to issues concerning equality, diversity and inclusion (EDI), particularly regarding the need for BABAO to become a more racially literate organisation. The review attempted to glean members’ understanding of anti-racism and how some cultures within the organisation may be racially exclusive or marginalising. In addition to this, the reviewers engaged with stakeholders about where areas could be improved within BABAO in continuing their work towards becoming a racially cognizant organisation. Responses gleaned from the focus groups and survey questionnaire distributed to members revealed that BABAO as an organisation has made some tentative first steps towards race equality, but has some way to go. The paucity of Black, Asian and Minority Ethnic members made gaining perspectives a challenge in relation to experiences of racial discrimination. In itself, this is an indicator that inclusion is an area for growth and reflection. Other key findings included issues with reporting structures and governance processes, with a need for strong and courageous leadership to drive forward conversations around race and racism; a need for training and work to improve racial literacy of the organisation and its members; and a lack of engagement and participation from current members in EDI issues. Nevertheless, the review also indicated that the organisation has made significant strides towards establishing anti-racist practices and are working diligently to engage all members in this endeavour. To this end, the conclusions and recommendations provided aim to enhance current action and further enable BABAO to achieve an anti-racist, inclusive organisational culture.Based on the considerations outlined throughout the report, there were twenty-seven recommendations made. They reflect the need to build a foundation of awareness, understanding and safety upon which to develop a culture of learning, reflection and shared, collective action. High-level recommendations are synthesised below, with further detail in the body of the report

Computer simulations of electrodiffusion problems based on Nernst-Planck and Poisson equations

A numerical procedure based on the method of lines for time-dependent electrodiffusion transport has been developed. Two types of boundary conditions (Neumann and Dirichlet) are considered. Finite difference space discretization with suitably selected weights based on a non-uniform grid is applied. Consistency of this method and the method put forward by Brumleve and Buck are analysed and compared. The resulting stiff system of ordinary differential equations is effectively solved using the RADAU5, RODAS and SEULEX integrators. The applications to selected electrochemical systems: liquid junction, bi-ionic case, ion selective electrodes and electrochemical impedance spectroscopy have been demonstrated. In the paper we promote the use of the full form of the Nernst-Planck and Poisson (NPP) equations, that is including explicitly the electric field as an unknown variable with no simplifications like electroneutrality or constant field assumptions. An effective method of the numerical solution of the NPP problem for arbitrary number of ionic species and valence numbers either for a steady state or a transient state is shown. The presented formulae - numerical solutions to the NPP problem - are ready to be implemented by anyone. Moreover, we make the resulting software freely available to anybody interested in using it. (C) 2012 Elsevier B.V. All rights reserved

Regression, developmental trajectory and associated problems in disorders in the autism spectrum: the SNAP study

We report rates of regression and associated findings in a population derived group of 255 children aged 9-14 years, participating in a prevalence study of autism spectrum disorders (ASD); 53 with narrowly defined autism, 105 with broader ASD and 97 with non-ASD neurodevelopmental problems, drawn from those with special educational needs within a population of 56,946 children. Language regression was reported in 30% with narrowly defined autism, 8% with broader ASD and less than 3% with developmental problems without ASD. A smaller group of children were identified who underwent a less clear setback. Regression was associated with higher rates of autistic symptoms and a deviation in developmental trajectory. Regression was not associated with epilepsy or gastrointestinal problems

Modeling Non Equilibrium Potentiometry to Understand and Control Selectivity and Detection Limit

The majority of present theoretical interpretations of ion-sensor response focus on phase boundary potentials. They assume electroneutrality and equilibrium or steady-state, thus ignoring electrochemical migration and time-dependent effects, respectively. These theoretical approaches, owing to their idealizations, make theorizing on ion distributions and electrical potentials in space and time domains impossible. Moreover, they are in conflict with recent experimental reports on ion-sensors, in which both kinetic (time-dependent) discrimination of ions to improve selectivity, and non-equilibrium transmembrane ion-transport for lowering detection limits, are deliberately used.For the above reasons, the Nernst-Planck-Poisson (NPP) equations are employed here to model the non-equilibrium response in a mathematically congruent manner. In the NPP model, electroneutrality and steady-state/equilibrium assumptions are abandoned. Consequently, directly predicting and visualizing the selectivity and the low detection limit variability over time, as well as the influence of other parameters, i.e. ion diffusibility, membrane thickness and permittivity, and primary to interfering ion concentration ratios on ion-sensor responses, are possible. Additionally, the NPP allows for solving the inverse problem i.e. searching for optimal sensor properties and measurement conditions via target functions and hierarchical modeling. The conditions under which experimentally measured selectivity coefficients are true (unbiased) and detection limits are optimized are demonstrated, and practical conclusions relevant to clinical measurements and bioassays are derived

Breakthrough in Modeling of Electrodiffusion Processes; Continuation and Extensions of the Classical Work of Richard Buck

In 1978 Brumleve and Buck published an important paper [1] pertaining to numerical modeling of electrodiffusion. At the time their approach was not immediately recognized and followed. However, it has changed since the beginning of 21st century. The approach of Brumleve and Buck based on Nernst-Planck-Poisson (NPP) equations is utilized to model transient behavior of various electrochemical processes. Multi-layers and reactions allow extending applications to selectivity and low detection limit with time variability, influence of parameters (ion diffusivities, membrane thickness, permittivity, rate constants), and ion interference on ion-sensor responses. Solution of NPP inverse problem allows for optimizing sensor properties and measurement environment. Conditions under which experimentally measured selectivity coefficients are true (unbiased) and detection limit is optimized are demonstrated. Impedance spectra obtained directly from NPPs are presented. Modeling durability and diagnosis of reinforced concrete is presented. Chlorides transport in concrete is modeled using NPPs and compared to other solutions

3D Brain Segmentation Using Dual-Front Active Contours with Optional User Interaction

Important attributes of 3D brain cortex segmentation algorithms include robustness, accuracy, computational efficiency, and facilitation of user interaction, yet few algorithms incorporate all of these traits. Manual segmentation is highly accurate but tedious and laborious. Most automatic techniques, while less demanding on the user, are much less accurate. It would be useful to employ a fast automatic segmentation procedure to do most of the work but still allow an expert user to interactively guide the segmentation to ensure an accurate final result. We propose a novel 3D brain cortex segmentation procedure utilizing dual-front active contours which minimize image-based energies in a manner that yields flexibly global minimizers based on active regions. Region-based information and boundary-based information may be combined flexibly in the evolution potentials for accurate segmentation results. The resulting scheme is not only more robust but much faster and allows the user to guide the final segmentation through simple mouse clicks which add extra seed points. Due to the flexibly global nature of the dual-front evolution model, single mouse clicks yield corrections to the segmentation that extend far beyond their initial locations, thus minimizing the user effort. Results on 15 simulated and 20 real 3D brain images demonstrate the robustness, accuracy, and speed of our scheme compared with other methods

The prevalence and incidence of mental ill-health in adults with autism and intellectual disabilities

The prevalence, and incidence, of mental ill-health in adults with intellectual disabilities and autism were compared with the whole population with intellectual disabilities, and with controls, matched individually for age, gender, ability-level, and Down syndrome. Although the adults with autism had a higher point prevalence of problem behaviours compared with the whole adult population with intellectual disabilities, compared with individually matched controls there was no difference in prevalence, or incidence of either problem behaviours or other mental ill-health. Adults with autism who had problem behaviours were less likely to recover over a two-year period than were their matched controls. Apparent differences in rates of mental ill-health are accounted for by factors other than autism, including Down syndrome and ability level

Crystallization of the Photosystem II core complex and its chlorophyll binding subunit CP43 from transplastomic plants of Nicotianatabacum

Photosystem II from transplastomic plants of Nicotiana tabacum with a hexahistidine tag at the N-terminal end of the PsbE subunit (α-chain of the cytochrome b559) was purified according to the protocol of Fey et al. (BBA 12:1501–1509, 2008). The protein sample was then subjected to two additional gel filtration runs in order to increase its homogeneity and to standardize the amount of detergent. Large three dimensional crystals of the core complex were obtained. Crystals of one of its chlorophyll binding subunits (CP43) in isolation grew in very similar conditions that differed only in the concentration of the detergent. Diffraction of Photosystem II and CP43 crystals at various synchrotron beamlines was limited to a resolution of 7 and 14 Å, respectively. In both cases the diffraction quality was insufficient for an unambiguous assignment of the crystallographic lattice or space group

Automatic volumetry on MR brain images can support diagnostic decision making.

Background: Diagnostic decisions in clinical imaging currently rely almost exclusively on visual image interpretation. This can lead to uncertainty, for example in dementia disease, where some of the changes resemble those of normal ageing. We hypothesized that extracting volumetric data from patients MR brain images, relating them to reference data and presenting the results as a colour overlay on the grey scale data would aid diagnostic readers in classifying dementia disease versus normal ageing. Methods: A proof-of-concept forced-choice reader study was designed using MR brain images from 36 subjects. Images were segmented into 43 regions using an automatic atlas registration-based label propagation procedure. Seven subjects had clinically probable AD, the remaining 29 of a similar age range were used as controls. Seven of the control subject data sets were selected at random to be presented along with the seven AD datasets to two readers, who were blinded to all clinical and demographic information except age and gender. Readers were asked to review the grey scale MR images and to record their choice of diagnosis (AD or non-AD) along with their confidence in this decision. Afterwards, readers were given the option to switch on a false-colour overlay representing the relative size of the segmented structures. Colorization was based on the size rank of the test subject when compared with a reference group consisting of the 22 control subjects who were not used as review subjects. The readers were then asked to record whether and how the additional information had an impact on their diagnostic confidence. Results: The size rank colour overlays were useful in 18 of 28 diagnoses, as determined by their impact on readers diagnostic confidence. A not useful result was found in 6 of 28 cases. The impact of the additional information on diagnostic confidence was significant (p < 0.02). Conclusion: Volumetric anatomical information extracted from brain images using automatic segmentation and presented as colour overlays can support diagnostic decision making. © 2008 Heckemann et al; licensee BioMed Central Ltd.Published versio