Antibodies to Chlamydia trachomatis in patients presenting with ectopic pregnancy at Groote Schuur hospital

Objectives. To detennine the prevalence of antibodies to Chlamydia trachomatis in women presenting with ectopic pregnancies to Groote Schuur Hospital.Methods. C. trachomatis antibody titres were measured using a modified micro-immunofluorescence test in women presenting with ectopic pregnancy. Control subjects were drawn from women with term pregnancies and an uneventful reproductive history.Results. Seventy-four patients and controls were studied. Demographic variables were controlled for at time of entry into the study. A significant association between the number of lifetime sexual partners and exposure to C. trachomatis was noted (P = 0.001). Patients with ectopic pregnancies had significantly higher antibody titres than control subjects (P = 0.001), and in both groups the prevalence of background antichlamydial antibody was high (ectopic pregnancies 59%, pregnant controls 32%).Conclusions. While the role of C. trachomatis infection in women who develop ectopic pregnancies needs to be explored further, it seems wise to treat them all with empirical antibiotics at the time of presentation

Seismic sparse-spike deconvolution via Toeplitz-sparse matrix factorization

We have developed a new sparse-spike deconvolution (SSD) method based on Toeplitz-sparse matrix factorization (TSMF), a bilinear decomposition of a matrix into the product of a Toeplitz matrix and a sparse matrix, to address the problems of lateral continuity, effects of noise, and wavelet estimation error in SSD. Assuming the convolution model, a constant source wavelet, and the sparse reflectivity, a seismic profile can be considered as a matrix that is the product of a Toeplitz wavelet matrix and a sparse reflectivity matrix. Thus, we have developed an algorithm of TSMF to simultaneously deconvolve the seismic matrix into a wavelet matrix and a reflectivity matrix by alternatively solving two inversion subproblems related to the Toeplitz wavelet matrix and sparse reflectivity matrix, respectively. Because the seismic wavelet is usually compact and smooth, the fused Lasso was used to constrain the elements in the Toeplitz wavelet matrix. Moreover, due to the limitations of computer memory, large seismic data sets were divided into blocks, and the average of the source wavelets deconvolved from these blocks via TSMF-based SSD was used as the final estimation of the source wavelet for all blocks to deconvolve the reflectivity; thus, the lateral continuity of the seismic data can be maintained. The advantages of the proposed deconvolution method include using multiple traces to reduce the effect of random noise, tolerance to errors in the initial wavelet estimation, and the ability to preserve the complex structure of the seismic data without using any lateral constraints. Our tests on the synthetic seismic data from the Marmousi2 model and a section of field seismic data demonstrate that the proposed method can effectively derive the wavelet and reflectivity simultaneously from band-limited data with appropriate lateral coherence, even when the seismic data are contaminated by noise and the initial wavelet estimation is inaccurate

Seafloor seismic monitoring of an active submarine volcano : local seismicity at Vailulu'u Seamount, Samoa

Author Posting. © American Geophysical Union, 2004. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geochemistry Geophysics Geosystems 5 (2004): Q06007, doi:10.1029/2004GC000702.We deployed five ocean bottom hydrophones (OBHs) for a 1-year seismic monitoring study of Vailulu'u Seamount, the youngest and easternmost volcano in the Samoan Archipelago. Four instruments were placed on the summit crater rim at 600–700 m water depth, and one was placed inside the crater at 1000 m water depth. An analysis of the first 45 days of records shows a very large number of seismic events, 211 of them local. These events define a steady background activity of about four seismic events per day, increasing to about 10 events per day during a week of heightened seismic activity, which peaked at 40 events during 1 day. We identified 107 earthquakes, whose arrivals could be picked on all five stations and that are likely located within the seamount, based on their similar waveforms. Two linear trends are defined by 21 of these events. These are extremely well correlated and located, first downward then upward on a steeply inclined plane that is close to the axial plane of the southeast rift as it emerges from the main summit of Vailulu'u. These events resemble volcanotectonic earthquakes from subaerial volcanoes in displaying very coherent seismic waveforms and by showing systematic, narrowly defined progressions in hypocenter locations. We propose that these events reflect brittle rock failure due to magma redistribution in or near a central magma reservoir.The bulk of this work was funded by NSF-OCE, in grants to HS and SRH and the OBSIP facility at Scripps

Tumor Suppressor Pdcd4 Attenuates Sin1 Translation to Inhibit Invasion in Colon Carcinoma

Programmed cell death 4 (Pdcd4), a tumor invasion suppressor, is frequently downregulated in colorectal cancer and other cancers. In this study, we find that loss of Pdcd4 increases the activity of mammalian target of rapamycin complex 2 (mTORC2) and thereby upregulates Snail expression. Examining the components of mTORC2 showed that Pdcd4 knockdown increased the protein but not mRNA level of stress-activated-protein kinase interacting protein 1 (Sin1), which resulted from enhanced Sin1 translation. To understand how Pdcd4 regulates Sin1 translation, the SIN1 5′ untranslated region (5′UTR) was fused with luciferase reporter and named as 5′Sin1-Luc. Pdcd4 knockdown/knockout significantly increased the translation of 5′Sin1-Luc but not the control luciferase without the SIN1 5′UTR, suggesting that Sin1 5′UTR is necessary for Pdcd4 to inhibit Sin1 translation. Ectopic expression of wild-type Pdcd4 and Pdcd4(157–469), a deletion mutant that binds to translation initiation factor 4A (eIF4A), sufficiently inhibited Sin1 translation, and thus suppressed mTORC2 kinase activity and invasion in colon tumor cells. By contrast, Pdcd4(157–469)(D253A,D418A), a mutant that does not bind to eIF4A, failed to inhibit Sin1 translation, and consequently failed to repress mTORC2 activity and invasion. In addition, directly inhibiting eIF4A with silvestrol significantly suppressed Sin1 translation and attenuated invasion. These results indicate that Pdcd4-inhibited Sin1 translation is through suppressing eIF4A, and functionally important for suppression of mTORC2 activity and invasion. Moreover, in colorectal cancer tissues, the Sin1 protein but not mRNA was significantly upregulated while Pdcd4 protein was downregulated, suggesting that loss of Pdcd4 might correlate with Sin1 protein level but not mRNA level in colorectal cancer patients. Taken together, our work reveals a novel mechanism by which Pdcd4 inhibits Sin1 translation to attenuatemTORC2 activity and thereby suppresses invasion

Molecular typing of Treponema pallidum in South Africa: cross-sectional studies.

We evaluated a molecular subtyping system for Treponema pallidum for its ability to differentiate between strains obtained from male patients with primary syphilis in South Africa. Of 201 T. pallidum-positive specimens, 161 were typeable, revealing 35 subtypes. The unique subtypes identified in Durban, Cape Town, and Carletonville and the total number of subtypes suggested that the strain population was very diverse and varied geographically

Was an epidemic of gonorrhoea among heterosexuals attending an Adelaide sexual health services associated with variations in sex work policing policy?

Background: A review of historical trends in gonococcal diagnoses made at the Adelaide Sexual Health Clinic (ASHC), South Australia, identified a substantial rise in diagnoses among heterosexuals between 2006 and 2010. Sex work is illegal in South Australia, regulated in Victoria and legal in New South Wales. This and other factors that could have influenced the epidemic were explored in this analysis. Methods: Retrospective analyses of gonorrhoea diagnoses made by sexual health services between 1990 and 2012 in three Australian state capitals, Melbourne (Victoria) and Sydney (New South Wales) were undertaken. Results: At the ASHC the proportion of gonorrhoea diagnoses was higher between 2006 and 2010 among heterosexual men (5.34% vs 0.84%, p<0.001), non-sex worker women (0.64% vs 0.28%, p<0.001) and female sex workers (FSWs) (1.75% vs 0.24%, p<0.001) compared with other years. This relationship was not seen at the Melbourne Sexual Health Clinic and corresponding data from the Sydney Sexual Health Centre showed that FSWs were less likely to have gonorrhoea between 2006 and 2010 than the other groups ( p=0.746, p=0.522, p=0.024, respectively). At ASHC FSWs were significantly more likely to be diagnosed between 2006 and 2010 (OR 2.8, 95% CI 1.48 to 5.27, p=0.002). Charges against sex workers peaked in 2007/2008. Conclusions: A substantial, self-limiting rise in diagnoses of heterosexual gonorrhoea was seen in Adelaide FSWs between 2006 and 2010. Removing barriers to condom use is vital to the prevention of HIV and STI transmission.Bin Li, Peng Bi, Russell Waddell, Eric PF Chow, Basil Donovan, Anna McNulty, Glenda Fehler, Bebe Loff, Hana Shahkhan, Christopher K Fairle