Benthic community structure and sea urchin distribution : the bay of Diego-Suarez / Mrowicki, R.J., & Fanning, E. (eds)

The Bay of Diego-Suarez, considered to be one of the finest and largest natural harbours in the world, is located towards the northernmost tip of Madagascar in the Antsiranana province. Despite its historical and current use as a port, much of its convoluted perimeter is still somewhat untouched, harbouring pristine shorelines and subtidal coral reefs. The position of the bay between other regions in which high marine biodiversity has already been revealed suggests that it may also harbour high biodiversity. However, the relatively long coastline and limited connectivity of the bay with the Indian Ocean, in combination with existing anthropogenic activities, potentially make its marine environments susceptible to a range of environmental impacts including sedimentation, nutrification and pollution. The Frontier-Madagascar Marine Research Programme (FMMRP) became involved in conducting marine ecological survey work in the Bay of Diego-Suarez, north Madagascar, in April 2005, having relocated from its previous base at Anakao in southwest Madagascar. The rationale for the survey programme stemmed from the affiliation of the FMMRP with the Malagasy organisations Association Nationale pour la Gestion des Aires Protégées (ANGAP) and Service d’Appui a la Gestion de l’Environnement (SAGE), who were interested in identifying areas of the bay with particularly healthy coral reef systems. Additional environmental interest in the bay has arisen as a result of its proximity to surrounding terrestrial protected areas such as the newly managed Ramena complex, incorporating Orangea and Montagne des Français, and also Montagne d’Ambre. Since its relocation to the Diego-Suarez area, the FMMRP has compiled over two years’ worth of marine ecological data relating to benthic community composition, fish species abundance and population size structure, frequency of algae and invertebrate indicator species, and physical environmental parameters. Thus there exists an extensive dataset for the Bay of Diego-Suarez, from which details of the current condition of its marine habitats can be investigated and a baseline for temporal monitoring can be established. The primary purpose of this report is to signify the initial detailed dissection of the dataset and demonstrate the conclusions that can be made regarding the ecological status of coral reef systems within the bay. This has mostly involved the examination of benthic data, focusing upon variations in percentage cover of substrata and coral community characteristics as useful structural indicators of reef condition. Additionally, the report includes an assessment of the abundance and distribution of sea urchins and their relation to benthic community patterns, as a demonstration of the ability to interrelate different aspect of the FMMRP dataset to enhance the conclusions that can be drawn. Benthic community data were obtained from 380 line intercept transects conducted in different sectors of the Bay of Diego-Suarez between October 2005 and December 2007, representing a combined distance of 7,600 m. Sediment occupied the greatest overall proportion of the benthos (around 38%), especially in the western areas of the bay. Overall mean hard coral cover was around 15%, and tended to co-vary with other ‘hard’ substrata such as rock and rubble. In total, 38 scleractinian coral genera were recorded during survey work, in addition to a number of unidentified genera. The coral communities of the bay were dominated by Acropora and Porites spp., which comprised around 33% and 20% of total recorded hard coral cover, respectively. Hard coral cover and generic diversity appeared to be positively related. These indicators were greatest in the northeast area opposite the mouth of the bay, reaching mean values of around 37% and 6.8 genera, respectively. Here, the hard coral community was dominated by Acropora spp. and comprised a relatively high proportional cover of Galaxea spp. In the northwest of the bay, coral cover was approximately half as great and consisted primarily of species belonging to the genera Porites and Millepora. Habitats in this area were highly similar in terms of their overall coral community composition. Hard coral cover and diversity were generally lower in the southern portion of the bay, especially in more immediate proximity to the population centre of Diego-Suarez (around 2% and 1.5- 5.5 genera, respectively). Coral community composition was considerably more variable than in the northern portion of the bay. v After sediment and ‘hard’ substrata, seagrass formed the next major interplaying component of the benthic environment (around 10% overall proportional cover). The easternmost areas adjacent to the mouth of the bay were characterised by high seagrass cover, whic h reached around 48%. Little or no seagrass was encountered elsewhere, except at one locality in the northwest (around 13% cover). Macroalgae cover was low and less variable, reaching a maximum value of around 10% adjacent to Diego-Suarez. There were no differences between island and mainland sites in terms of overall benthic substratum characteristics, yet soft coral cover was significantly greater amongst island sectors. Sea urchin abundance data were obtained from 498 belt transects conducted between April 2006 and December 2007, representing a total area of 49,800 m2. A total of 6 species were recorded, of which Diadema setosum comprised by far the greatest relative abundance (96%) and observation frequency (55%). The greatest population densities of this species were encountered in the more exposed areas in the west and northwest, reaching around 1.5 m-2, and very few individuals were recorded in the eastern reaches. Data suggest a possible seasonal increase in D. setosum densities, corresponding with an increase in water temperature towards the end of the year. No significant correlation existed between D. setosum population density and coral cover, although these seemed to be inversely related in the central northern area of the bay. There was also no significant correlation with macroalgae cover. However, D. setosum density was positively and negatively associated with rubble and seagrass cover, respectively. There was a lack of a clear pattern amongst sectors with respect to overall benthic community characteristics, let alone between the density of D. setosum and benthic substratum composition. In conclusion, a relatively detailed map of benthic community composition has been produced for the Bay of Diego-Suarez, which shall be useful in elucidating the primary factors determining the condition of marine environments within the bay and developing effective sustainable management strategies. Further analysis, incorporating additional components of the FMMRP dataset, is required in order to further clarify our understanding of the key issues surrounding the current status of these coral reef systems. It is hoped that continued survey work will enable important long-term ecological monitoring of the marine environment of the bay and assessment of the effectiveness of any management initiatives that may be implemented

Elucidation of the RamA Regulon in Klebsiella pneumoniae Reveals a Role in LPS Regulation

Klebsiella pneumoniae is a significant human pathogen, in part due to high rates of multidrug resistance. RamA is an intrinsic regulator in K. pneumoniae established to be important for the bacterial response to antimicrobial challenge; however, little is known about its possible wider regulatory role in this organism during infection. In this work, we demonstrate that RamA is a global transcriptional regulator that significantly perturbs the transcriptional landscape of K. pneumoniae, resulting in altered microbe-drug or microbe-host response. This is largely due to the direct regulation of 68 genes associated with a myriad of cellular functions. Importantly, RamA directly binds and activates the lpxC, lpxL-2 and lpxO genes associated with lipid A biosynthesis, thus resulting in modifications within the lipid A moiety of the lipopolysaccharide. RamA-mediated alterations decrease susceptibility to colistin E, polymyxin B and human cationic antimicrobial peptide LL-37. Increased RamA levels reduce K. pneumoniae adhesion and uptake into macrophages, which is supported by in vivo infection studies, that demonstrate increased systemic dissemination of ramA overexpressing K. pneumoniae. These data establish that RamA-mediated regulation directly perturbs microbial surface properties, including lipid A biosynthesis, which facilitate evasion from the innate host response. This highlights RamA as a global regulator that confers pathoadaptive phenotypes with implications for our understanding of the pathogenesis of Enterobacter, Salmonella and Citrobacter spp. that express orthologous RamA proteins

Inhibition of Simian Virus 40 replication by targeting the molecular chaperone function and ATPase activity of T antigen

Polyomaviruses such as BK virus and JC virus have been linked to several diseases, but treatments that thwart their propagation are limited in part because of slow growth and cumbersome culturing conditions. In contrast, the replication of one member of this family, Simian Virus 40 (SV40), is robust and has been well-characterized. SV40 replication requires two domains within the viral-encoded large tumor antigen (TAg): The ATPase domain and the N-terminal J domain, which stimulates the ATPase activity of the Hsp70 chaperone. To assess whether inhibitors of polyomavirus replication could be identified, we examined a recently described library of small molecules, some of which inhibit chaperone function. One compound, MAL2-11B, inhibited both TAg's endogenous ATPase activity and the TAg-mediated activation of Hsp70. MAL2-11B also reduced SV40 propagation in plaque assays and compromised DNA replication in cell culture and in vitro. Furthermore, the compound significantly reduced the growth of BK virus in a human kidney cell line. These data indicate that pharmacological inhibition of TAg's chaperone and ATPase activities may provide a route to combat polyomavirus-mediated disease. © 2009 Elsevier B.V. All rights reserved

Ram locus is a key regulator to trigger multidrug resistance in Enterobacter aerogenes

Purpose: Several genetic regulators belonging to AraC family are involved in the emergence of MDR isolates of E. aerogenes due to alterations in membrane permeability. Compared with the genetic regulator Mar, RamA may be more relevant towards the emergence of antibiotic resistance. Methodology: Focusing on the global regulators, Mar and Ram, we compared the amino acid sequences of the Ram repressor in 59 clinical isolates and laboratory strains of E. aerogenes. Sequence types were associated with their corresponding multi-drug resistance phenotypes and membrane protein expression profiles using MIC and immunoblot assays. Quantitative gene expression analysis of the different regulators and their targets (porins and efflux pump components) were performed. Results: In the majority of the MDR isolates tested, ramR and a region upstream of ramA were mutated but marR or marA were unchanged. Expression and cloning experiments highlighted the involvement of the ram locus in the modification of membrane permeability. Overexpression of RamA lead to decreased porin production and increased expression of efflux pump components, whereas overexpression of RamR had the opposite effects. Conclusion: Mutations or deletions in ramR, leading to the overexpression of RamA predominated in clinical MDR E. aerogenes isolates and were associated with a higher-level of expression of efflux pump components. It was hypothesised that mutations in ramR, and the self-regulating region proximal to ramA, probably altered the binding properties of the RamR repressor; thereby producing the MDR phenotype. Consequently, mutability of RamR may play a key role in predisposing E. aerogenes towards the emergence of a MDR phenotype

The B Street Residence Biophilic Design and the Colorado Home

The main focus of this Capstone has been exploratory—self-educational. After having learned, during the course of my studies in interior design, about the methodology of biophilic design (literally, “life-loving”)—which deals with the human psychological affinity for the natural world and attempting to reconcile that with the built environment, in order to create spaces that protect both body and mind—I wanted to experiment within that philosophy, to build my own biophilic design skills. This matched well with my long-running passion for sustainable design—the two methodologies are distinct but closely related, and when used in concert they represent a progressive vision for responsible, ecologically-sensitive design. From those starting parameters, I searched for an appropriate design context, a framework that would be simple enough to allow for creativity and generative experimentation, but substantial enough to yield a final product with designerly merit. The field of residential design strikes a good balance between these criteria, and a single-family home is small enough in scope that designing an entire building envelope and the interior would not be too great a challenge for a single person. But in order to complicate the framework slightly, I chose a particularly challenging site located in the downtown area of Pueblo, Colorado—a small city, not known for its urban life. In this way, the project includes an element of urban revitalization as well, a subtle argument for a new way of thinking about the home in relation its geographic context. The concept of a mixed-use single-family home is largely untested, and although the full urban-planning implications are not within the scope of this project or my abilities, they provided another pie into which this project could stick its fingers. A significant factor in both biophilic and sustainable design is the importance of place—designs that operate under these methodologies should respond to the local climate, culture, and existing vernacular architecture of a place in order to avoid the facelessness that characterizes much of postmodern design. The specific site then became of importance for the development of the cultural situating of the design—the existing 19th century architecture of downtown, the regional Southwestern vernacular, and the architectural encounters from a particularly interesting trip to Istanbul might make for strange design bedfellows on paper, but part of the challenge for all designers is controlling the numerous contextual threads of any design, weaving them into a cohesive whole while preventing them from tangling. This project, ultimately, represents an exploration and development of my own abilities to reconcile the existing cultural implications of a place, the aesthetic inspiration I have found in my travels abroad, the methodologies of biophilic design and the strategies of sustainable design, and an imagining of what home can truly be. The final product is a building designed from the ground up, and from the inside out, with all of these considerations in mind—and, most importantly, the consideration for the health and happiness of the people who might someday occupy it

Are the Taitao granites formed due to subduction of the Chile ridge?

The Taitao granites are distributed around the Late Miocene Taitao ophiolite (5.66 ± 0.33 Ma to 5.19 ± 0.15 Ma) exposed at the western tip of the Taitao peninsula, southern Chile, ~ 50 km southeast from the present day Chile triple junction. In this paper, we report sensitive high mass-resolution ion microprobe (SHRIMP) U–Pb ages for the Taitao granites to elucidate the temporal relationship between the ophiolite and granites, and discuss the origin of the granitic melts. Five intrusive bodies of the Taitao granites have U–Pb ages ranging from 5.70 ± 0.25 Ma (Tres Montes pluton in southeast) to 3.92 ± 0.07 Ma (Cabo Raper pluton in southwest). The Estero Cono, Seno Hoppner and Bahia Barrientos intrusions that fringe eastern margin of the ophiolite have U–Pb ages ranging from 5.17 ± 0.09 Ma to 4.88 ± 0.3 Ma. Recycled zircon cores are common only in the Tres Montes pluton. Our data indicate that the generation of the granitic melts started in the Tres Montes area when a short segment of the Chile ridge system started to subduct ca. 6 Ma ago. This magmatism involved contamination with sediments/basement rocks. A part of the subducting ridge center was emplaced to form the present Taitao ophiolite at ~ 5.6 Ma. Generation of granitic melts continued as the spreading center of the same ridge segment subducted, due perhaps to partial melting of the ophiolite and/or oceanic crust enhanced by heat from upwelling mantle beneath the ridge. Granitic magmas with various compositions developed during subduction of the ridge. Emplacement of the ophiolite and formation of continental crust took place almost simultaneously

The laurentian record of neoproterozoic glaciation, tectonism, and eukaryotic evolution in Death Vally, California

Neoproterozoic strata in Death Valley, California contain eukaryotic microfossils and glacial deposits that have been used to assess the severity of putative Snowball Earth events and the biological response to extreme environmental change. These successions also contain evidence for syn-sedimentary faulting that has been related to the rifting of Rodinia, and in turn the tectonic context of the onset of Snowball Earth. These interpretations hinge on local geological relationships and both regional and global stratigraphic correlations. Here we present new geological mapping, measured stratigraphic sections, carbon and strontium isotope chemostratigraphy, and micropaleontology from the Neoproterozoic glacial deposits and bounding strata in Death Valley. These new data enable us to refine regional correlations both across Death Valley and throughout Laurentia, and construct a new age model for glaciogenic strata and microfossil assemblages. Particularly, our remapping of the Kingston Peak Formation in the Saddle Peak Hills and near the type locality shows for the first time that glacial deposits of both the Marinoan and Sturtian glaciations can be distinguished in southeastern Death Valley, and that beds containing vase-shaped microfossils are slump blocks derived from the underlying strata. These slump blocks are associated with multiple overlapping unconformities that developed during syn-sedimentary faulting, which is a common feature of Cyrogenian strata along the margin of Laurentia from California to Alaska. With these data, we conclude that all of the microfossils that have been described to date in Neoproterozoic strata of Death Valley predate the glaciations and do not bear on the severity, extent or duration of Neoproterozoic Snowball Earth events