406 research outputs found
Language differences in qualitative research: is meaning lost in translation?
This article discusses challenges of language differences in qualitative research, when participants and the main researcher have the same non-English native language and the non-English data lead to an English publication. Challenges of translation are discussed from the perspective that interpretation of meaning is the core of qualitative research. As translation is also an interpretive act, meaning may get lost in the translation process. Recommendations are suggested, aiming to contribute to the best possible representation and understanding of the interpreted experiences of the participants and thereby to the validity of qualitative research
Application of Global Positioning System and questionnaires data for the study of driver behavior on two-lane rural roads
This paper is a preprint of a paper accepted by IET Intelligent Transport Systems and is subject to Institution of Engineering and Technology Copyright. When the final version is published, the copy of record will be available at IET Digital LibraryMethodologies based on naturalistic observation provide the most accurate data for studying drivers' behaviour. This study presents a new methodology to obtain naturalistic data related to drivers' behaviour in a road segment. It is based on the combination of using global positioning system data and drivers' questionnaires. The continuous speed profiles along a road segment and the characteristics of drivers, of their trips and the type of their vehicles can be obtained for a great amount of drivers. It has already been successfully used for several studies, such as the development of models to estimate operating speed profile in two-lane rural road segments; or the characterisation of driving styles. These operating speed models have been the key for the development of a new geometric design consistency model, allowing an easier road safety evaluation. Besides, knowledge on the human factors that influence speed choice may be useful for road safety media campaigns and education programs designers, and also for the improvement of intelligent driver assistance systems.The authors thank 'Centre for Studies and Experimentation of Public Works (CEDEX)' of the 'Spanish Ministry of Public Works' that partially subsidizes the research. We also wish to thank to the 'General Directorate of Public Works, Urban Projects and Housing' of the 'Infrastructure, Territory and Environment Department' of the 'Valencian Government', to the 'Valencian Provincial Council' and to the 'General Directorate of Traffic' of the 'Ministry of the Interior' for their cooperation in field data gathering.PĂŠrez Zuriaga, AM.; Camacho Torregrosa, FJ.; Campoy Ungria, JM.; GarcĂa GarcĂa, A. (2013). Application of Global Positioning System and questionnaires data for the study of driver behavior on two-lane rural roads. IET Intelligent Transport Systems. 7(2):182-189. doi:10.1049/iet-its.2012.0151S18218972Fourie, M., Walton, D., & Thomas, J. A. (2011). Naturalistic observation of driversâ hands, speed and headway. Transportation Research Part F: Traffic Psychology and Behaviour, 14(5), 413-421. doi:10.1016/j.trf.2011.04.009Gibreel, G. M., Easa, S. M., & El-Dimeery, I. A. (2001). Prediction of Operating Speed on Three-Dimensional Highway Alignments. Journal of Transportation Engineering, 127(1), 21-30. doi:10.1061/(asce)0733-947x(2001)127:1(21)Fitzpatrick, K., & Collins, J. M. (2000). Speed-Profile Model for Two-Lane Rural Highways. Transportation Research Record: Journal of the Transportation Research Board, 1737(1), 42-49. doi:10.3141/1737-06Bella, F. (2008). Driving simulator for speed research on two-lane rural roads. Accident Analysis & Prevention, 40(3), 1078-1087. doi:10.1016/j.aap.2007.10.015Van Nes, N., Houtenbos, M., & Van Schagen, I. (2008). Improving speed behaviour: the potential of in-car speed assistance and speed limit credibility. IET Intelligent Transport Systems, 2(4), 323. doi:10.1049/iet-its:20080036Warner, H. W., & Ă
berg, L. (2006). Driversâ decision to speed: A study inspired by the theory of planned behavior. Transportation Research Part F: Traffic Psychology and Behaviour, 9(6), 427-433. doi:10.1016/j.trf.2006.03.004Goldenbeld, C., & van Schagen, I. (2007). The credibility of speed limits on 80km/h rural roads: The effects of road and person(ality) characteristics. Accident Analysis & Prevention, 39(6), 1121-1130. doi:10.1016/j.aap.2007.02.012Zuriaga, A. M. P., GarcĂa, A. G., Torregrosa, F. J. C., & DâAttoma, P. (2010). Modeling Operating Speed and Deceleration on Two-Lane Rural Roads with Global Positioning System Data. Transportation Research Record: Journal of the Transportation Research Board, 2171(1), 11-20. doi:10.3141/2171-02Ottesen, J. L., & Krammes, R. A. (2000). Speed-Profile Model for a Design-Consistency Evaluation Procedure in the United States. Transportation Research Record: Journal of the Transportation Research Board, 1701(1), 76-85. doi:10.3141/1701-10Park, P. Y., Miranda-Moreno, L. F., & Saccomanno, F. F. (2010). Estimation of speed differentials on rural highways using hierarchical linear regression models. Canadian Journal of Civil Engineering, 37(4), 624-637. doi:10.1139/l10-002Wasielewski, P. (1984). Speed as a measure of driver risk: Observed speeds versus driver and vehicle characteristics. Accident Analysis & Prevention, 16(2), 89-103. doi:10.1016/0001-4575(84)90034-4Williams, A. F., Kyrychenko, S. Y., & Retting, R. A. (2006). Characteristics of speeders. Journal of Safety Research, 37(3), 227-232. doi:10.1016/j.jsr.2006.04.001Lajunen, T., Karola, J., & Summala, H. (1997). Speed and Acceleration as Measures of Driving Style in Young Male Drivers. Perceptual and Motor Skills, 85(1), 3-16. doi:10.2466/pms.1997.85.1.3Af WĂĽhlberg, A. E. (2006). Speed choice versus celeration behavior as traffic accident predictor. Journal of Safety Research, 37(1), 43-51. doi:10.1016/j.jsr.2005.10.01
Improved analysis of bacterial CGH data beyond the log-ratio paradigm
<p>Abstract</p> <p>Background</p> <p>Existing methods for analyzing bacterial CGH data from two-color arrays are based on log-ratios only, a paradigm inherited from expression studies. We propose an alternative approach, where microarray signals are used in a different way and sequence identity is predicted using a supervised learning approach.</p> <p>Results</p> <p>A data set containing 32 hybridizations of sequenced versus sequenced genomes have been used to test and compare methods. A ROC-analysis has been performed to illustrate the ability to rank probes with respect to Present/Absent calls. Classification into Present and Absent is compared with that of a gaussian mixture model.</p> <p>Conclusion</p> <p>The results indicate our proposed method is an improvement of existing methods with respect to ranking and classification of probes, especially for multi-genome arrays.</p
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Quantifying resilience of humans and other animals
All life requires the capacity to recover from challenges that are as inevitable as they are unpredictable. Understanding this resilience is essential for managing the health of humans and their livestock. It has long been difficult to quantify resilience directly, forcing practitioners to rely on indirect static indicators of health. However, measurements from wearable electronics and other sources now allow us to analyze the dynamics of physiology and behavior with unsurpassed resolution. The resulting flood of data coincides with the emergence of novel analytical tools for estimating resilience from the pattern of micro-recoveries observed in natural time series. Such dynamic indicators of resilience (DIORs) may be used to monitor the risk of systemic failure across systems ranging from organs to entire organisms. These tools invite a fundamental rethink of our approach to the adaptive management of health and resilience
Sequencing of neuroblastoma identifies chromothripsis and defects in neuritogenesis genes
Neuroblastoma is a childhood tumour of the peripheral sympathetic nervous system. The pathogenesis has for a long time been quite enigmatic, as only very few gene defects were identified in this often lethal tumour. Frequently detected gene alterations are limited to MYCN amplification (20%) and ALK activations (7%). Here we present a whole-genome sequence analysis of 87 neuroblastoma of all stages. Few recurrent amino-acid-changing mutations were found. In contrast, analysis of structural defects identified a local shredding of chromosomes, known as chromothripsis, in 18% of high-stage neuroblastoma. These tumours are associated with a poor outcome. Structural alterations recurrently affected ODZ3, PTPRD and CSMD1, which are involved in neuronal growth cone stabilization. In addition, ATRX, TIAM1 and a series of regulators of the Rac/Rho pathway were mutated, further implicating defects in neuritogenesis in neuroblastoma. Most tumours with defects in these genes were aggressive high-stage neuroblastomas, but did not carry MYCN amplifications. The genomic landscape of neuroblastoma therefore reveals two novel molecular defects, chromothripsis and neuritogenesis gene alterations, which frequently occur in high-risk tumours
Regularity Properties and Pathologies of Position-Space Renormalization-Group Transformations
We reconsider the conceptual foundations of the renormalization-group (RG)
formalism, and prove some rigorous theorems on the regularity properties and
possible pathologies of the RG map. Regarding regularity, we show that the RG
map, defined on a suitable space of interactions (= formal Hamiltonians), is
always single-valued and Lipschitz continuous on its domain of definition. This
rules out a recently proposed scenario for the RG description of first-order
phase transitions. On the pathological side, we make rigorous some arguments of
Griffiths, Pearce and Israel, and prove in several cases that the renormalized
measure is not a Gibbs measure for any reasonable interaction. This means that
the RG map is ill-defined, and that the conventional RG description of
first-order phase transitions is not universally valid. For decimation or
Kadanoff transformations applied to the Ising model in dimension ,
these pathologies occur in a full neighborhood of the low-temperature part of the first-order
phase-transition surface. For block-averaging transformations applied to the
Ising model in dimension , the pathologies occur at low temperatures
for arbitrary magnetic-field strength. Pathologies may also occur in the
critical region for Ising models in dimension . We discuss in detail
the distinction between Gibbsian and non-Gibbsian measures, and give a rather
complete catalogue of the known examples. Finally, we discuss the heuristic and
numerical evidence on RG pathologies in the light of our rigorous theorems.Comment: 273 pages including 14 figures, Postscript, See also
ftp.scri.fsu.edu:hep-lat/papers/9210/9210032.ps.
Real-world Experience of Abrocitinib Treatment in Patients with Atopic Dermatitis and Hand Eczema: Up to 28-week Results from the BioDay Registry
Limited daily practice data on the effect of abrocitinib in patients with atopic dermatitis are available. The aim of this multicentre prospective study is to evaluate the effectiveness and safety of abrocitinib in patients with atopic dermatitis treated in daily practice. In a subgroup, the effectiveness of abrocitinib on hand eczema was evaluated. A total of 103 patients from the BioDay registry were included in the study: week 4 (nâ=â95), week 16 (nâ=â61) and week 28 (nâ=â39). At week 28, the Eczema Area and Severity Index (EASI)-50/75/90 was achieved by 81.8%, 57.6%, and 18.2%, respectively, and the weekly average pruritus numerical rating scaleââ¤â4 by 62.9%. The effectiveness of abrocitinib was not significantly different between dupilumab non-responders and dupilumab-naĂŻve patients/responders, and between upadacitinib non-responders and upadacitinib-naĂŻve patients/responders. MeanâÂąâstandard deviation Hand Eczema Severity Index decreased from 27.4âÂąâ27.7 at baseline to 7.7âÂąâ12.1 at week 28 (nâ=â31). Thirty-two patients (31.1%) discontinued treatment due to ineffectiveness (nâ=â17), adverse events (nâ=â9) or both (nâ=â3). The most frequently reported adverse event was nausea (nâ=â28). In conclusion, abrocitinib is an effective treatment for atopic dermatitis and can be effective for patients with previous inadequate response to dupilumab or upadacitinib. Furthermore, hand eczema can improve in patients treated with abrocitinib for atopic dermatitis
A mathematical framework for critical transitions: normal forms, variance and applications
Critical transitions occur in a wide variety of applications including
mathematical biology, climate change, human physiology and economics. Therefore
it is highly desirable to find early-warning signs. We show that it is possible
to classify critical transitions by using bifurcation theory and normal forms
in the singular limit. Based on this elementary classification, we analyze
stochastic fluctuations and calculate scaling laws of the variance of
stochastic sample paths near critical transitions for fast subsystem
bifurcations up to codimension two. The theory is applied to several models:
the Stommel-Cessi box model for the thermohaline circulation from geoscience,
an epidemic-spreading model on an adaptive network, an activator-inhibitor
switch from systems biology, a predator-prey system from ecology and to the
Euler buckling problem from classical mechanics. For the Stommel-Cessi model we
compare different detrending techniques to calculate early-warning signs. In
the epidemics model we show that link densities could be better variables for
prediction than population densities. The activator-inhibitor switch
demonstrates effects in three time-scale systems and points out that excitable
cells and molecular units have information for subthreshold prediction. In the
predator-prey model explosive population growth near a codimension two
bifurcation is investigated and we show that early-warnings from normal forms
can be misleading in this context. In the biomechanical model we demonstrate
that early-warning signs for buckling depend crucially on the control strategy
near the instability which illustrates the effect of multiplicative noise.Comment: minor corrections to previous versio
Validation study of the prognostic value of cyclin-dependent kinase (CDK)-based risk in Caucasian breast cancer patients
In a Japanese study, cyclin-dependent kinase (CDK) based risk determined by CDK 1 and 2 activities was associated with risk of distance recurrence in early breast cancer patients. The aim of our study was to validate this risk categorization in European early breast cancer patients. We retrospectively analyzed frozen breast cancer specimens of 352 Dutch patients with histologically confirmed primary invasive early breast cancer. CDK-based risk was determined in tumour tissues by calculating a risk score (RS) according to kinases activity and protein mass concentration assay without the knowledge of outcome. Determination of CDK-based risk was feasible in 184 out of 352 (52%) tumours. Median follow-up of these patients was 15 years. In patients not receiving systemic treatment, the proportions of risk categories were 44% low, 16% intermediate, and 40% high CDK-based risk. These groups remained significant after univariate and multivariate Cox-regression analysis. Factors associated with a shorter distant recurrence-free period were positive lymph nodes, mastectomy with radiotherapy, and high CDK-based risk. There was no significant correlation with overall survival (OS). CDK-based risk is a prognostic marker of distance recurrence of patients with early breast cancer. More validation would be warranted to use of CDK-based risk into clinical practice
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