Language differences in qualitative research: is meaning lost in translation?

This article discusses challenges of language differences in qualitative research, when participants and the main researcher have the same non-English native language and the non-English data lead to an English publication. Challenges of translation are discussed from the perspective that interpretation of meaning is the core of qualitative research. As translation is also an interpretive act, meaning may get lost in the translation process. Recommendations are suggested, aiming to contribute to the best possible representation and understanding of the interpreted experiences of the participants and thereby to the validity of qualitative research

Application of Global Positioning System and questionnaires data for the study of driver behavior on two-lane rural roads

This paper is a preprint of a paper accepted by IET Intelligent Transport Systems and is subject to Institution of Engineering and Technology Copyright. When the final version is published, the copy of record will be available at IET Digital LibraryMethodologies based on naturalistic observation provide the most accurate data for studying drivers' behaviour. This study presents a new methodology to obtain naturalistic data related to drivers' behaviour in a road segment. It is based on the combination of using global positioning system data and drivers' questionnaires. The continuous speed profiles along a road segment and the characteristics of drivers, of their trips and the type of their vehicles can be obtained for a great amount of drivers. It has already been successfully used for several studies, such as the development of models to estimate operating speed profile in two-lane rural road segments; or the characterisation of driving styles. These operating speed models have been the key for the development of a new geometric design consistency model, allowing an easier road safety evaluation. Besides, knowledge on the human factors that influence speed choice may be useful for road safety media campaigns and education programs designers, and also for the improvement of intelligent driver assistance systems.The authors thank 'Centre for Studies and Experimentation of Public Works (CEDEX)' of the 'Spanish Ministry of Public Works' that partially subsidizes the research. We also wish to thank to the 'General Directorate of Public Works, Urban Projects and Housing' of the 'Infrastructure, Territory and Environment Department' of the 'Valencian Government', to the 'Valencian Provincial Council' and to the 'General Directorate of Traffic' of the 'Ministry of the Interior' for their cooperation in field data gathering.Pérez Zuriaga, AM.; Camacho Torregrosa, FJ.; Campoy Ungria, JM.; García García, A. (2013). Application of Global Positioning System and questionnaires data for the study of driver behavior on two-lane rural roads. IET Intelligent Transport Systems. 7(2):182-189. doi:10.1049/iet-its.2012.0151S18218972Fourie, M., Walton, D., & Thomas, J. A. (2011). Naturalistic observation of drivers’ hands, speed and headway. Transportation Research Part F: Traffic Psychology and Behaviour, 14(5), 413-421. doi:10.1016/j.trf.2011.04.009Gibreel, G. M., Easa, S. M., & El-Dimeery, I. A. (2001). Prediction of Operating Speed on Three-Dimensional Highway Alignments. Journal of Transportation Engineering, 127(1), 21-30. doi:10.1061/(asce)0733-947x(2001)127:1(21)Fitzpatrick, K., & Collins, J. M. (2000). Speed-Profile Model for Two-Lane Rural Highways. Transportation Research Record: Journal of the Transportation Research Board, 1737(1), 42-49. doi:10.3141/1737-06Bella, F. (2008). Driving simulator for speed research on two-lane rural roads. Accident Analysis & Prevention, 40(3), 1078-1087. doi:10.1016/j.aap.2007.10.015Van Nes, N., Houtenbos, M., & Van Schagen, I. (2008). Improving speed behaviour: the potential of in-car speed assistance and speed limit credibility. IET Intelligent Transport Systems, 2(4), 323. doi:10.1049/iet-its:20080036Warner, H. W., & Åberg, L. (2006). Drivers’ decision to speed: A study inspired by the theory of planned behavior. Transportation Research Part F: Traffic Psychology and Behaviour, 9(6), 427-433. doi:10.1016/j.trf.2006.03.004Goldenbeld, C., & van Schagen, I. (2007). The credibility of speed limits on 80km/h rural roads: The effects of road and person(ality) characteristics. Accident Analysis & Prevention, 39(6), 1121-1130. doi:10.1016/j.aap.2007.02.012Zuriaga, A. M. P., García, A. G., Torregrosa, F. J. C., & D’Attoma, P. (2010). Modeling Operating Speed and Deceleration on Two-Lane Rural Roads with Global Positioning System Data. Transportation Research Record: Journal of the Transportation Research Board, 2171(1), 11-20. doi:10.3141/2171-02Ottesen, J. L., & Krammes, R. A. (2000). Speed-Profile Model for a Design-Consistency Evaluation Procedure in the United States. Transportation Research Record: Journal of the Transportation Research Board, 1701(1), 76-85. doi:10.3141/1701-10Park, P. Y., Miranda-Moreno, L. F., & Saccomanno, F. F. (2010). Estimation of speed differentials on rural highways using hierarchical linear regression models. Canadian Journal of Civil Engineering, 37(4), 624-637. doi:10.1139/l10-002Wasielewski, P. (1984). Speed as a measure of driver risk: Observed speeds versus driver and vehicle characteristics. Accident Analysis & Prevention, 16(2), 89-103. doi:10.1016/0001-4575(84)90034-4Williams, A. F., Kyrychenko, S. Y., & Retting, R. A. (2006). Characteristics of speeders. Journal of Safety Research, 37(3), 227-232. doi:10.1016/j.jsr.2006.04.001Lajunen, T., Karola, J., & Summala, H. (1997). Speed and Acceleration as Measures of Driving Style in Young Male Drivers. Perceptual and Motor Skills, 85(1), 3-16. doi:10.2466/pms.1997.85.1.3Af Wåhlberg, A. E. (2006). Speed choice versus celeration behavior as traffic accident predictor. Journal of Safety Research, 37(1), 43-51. doi:10.1016/j.jsr.2005.10.01

Improved analysis of bacterial CGH data beyond the log-ratio paradigm

<p>Abstract</p> <p>Background</p> <p>Existing methods for analyzing bacterial CGH data from two-color arrays are based on log-ratios only, a paradigm inherited from expression studies. We propose an alternative approach, where microarray signals are used in a different way and sequence identity is predicted using a supervised learning approach.</p> <p>Results</p> <p>A data set containing 32 hybridizations of sequenced versus sequenced genomes have been used to test and compare methods. A ROC-analysis has been performed to illustrate the ability to rank probes with respect to Present/Absent calls. Classification into Present and Absent is compared with that of a gaussian mixture model.</p> <p>Conclusion</p> <p>The results indicate our proposed method is an improvement of existing methods with respect to ranking and classification of probes, especially for multi-genome arrays.</p

Quantifying resilience of humans and other animals

All life requires the capacity to recover from challenges that are as inevitable as they are unpredictable. Understanding this resilience is essential for managing the health of humans and their livestock. It has long been difficult to quantify resilience directly, forcing practitioners to rely on indirect static indicators of health. However, measurements from wearable electronics and other sources now allow us to analyze the dynamics of physiology and behavior with unsurpassed resolution. The resulting flood of data coincides with the emergence of novel analytical tools for estimating resilience from the pattern of micro-recoveries observed in natural time series. Such dynamic indicators of resilience (DIORs) may be used to monitor the risk of systemic failure across systems ranging from organs to entire organisms. These tools invite a fundamental rethink of our approach to the adaptive management of health and resilience

Sequencing of neuroblastoma identifies chromothripsis and defects in neuritogenesis genes

Neuroblastoma is a childhood tumour of the peripheral sympathetic nervous system. The pathogenesis has for a long time been quite enigmatic, as only very few gene defects were identified in this often lethal tumour. Frequently detected gene alterations are limited to MYCN amplification (20%) and ALK activations (7%). Here we present a whole-genome sequence analysis of 87 neuroblastoma of all stages. Few recurrent amino-acid-changing mutations were found. In contrast, analysis of structural defects identified a local shredding of chromosomes, known as chromothripsis, in 18% of high-stage neuroblastoma. These tumours are associated with a poor outcome. Structural alterations recurrently affected ODZ3, PTPRD and CSMD1, which are involved in neuronal growth cone stabilization. In addition, ATRX, TIAM1 and a series of regulators of the Rac/Rho pathway were mutated, further implicating defects in neuritogenesis in neuroblastoma. Most tumours with defects in these genes were aggressive high-stage neuroblastomas, but did not carry MYCN amplifications. The genomic landscape of neuroblastoma therefore reveals two novel molecular defects, chromothripsis and neuritogenesis gene alterations, which frequently occur in high-risk tumours

Regularity Properties and Pathologies of Position-Space Renormalization-Group Transformations

We reconsider the conceptual foundations of the renormalization-group (RG) formalism, and prove some rigorous theorems on the regularity properties and possible pathologies of the RG map. Regarding regularity, we show that the RG map, defined on a suitable space of interactions (= formal Hamiltonians), is always single-valued and Lipschitz continuous on its domain of definition. This rules out a recently proposed scenario for the RG description of first-order phase transitions. On the pathological side, we make rigorous some arguments of Griffiths, Pearce and Israel, and prove in several cases that the renormalized measure is not a Gibbs measure for any reasonable interaction. This means that the RG map is ill-defined, and that the conventional RG description of first-order phase transitions is not universally valid. For decimation or Kadanoff transformations applied to the Ising model in dimension $d \ge 3$, these pathologies occur in a full neighborhood $\{ \beta > \beta_0 ,\, |h| < \epsilon(\beta) \}$ of the low-temperature part of the first-order phase-transition surface. For block-averaging transformations applied to the Ising model in dimension $d \ge 2$, the pathologies occur at low temperatures for arbitrary magnetic-field strength. Pathologies may also occur in the critical region for Ising models in dimension $d \ge 4$. We discuss in detail the distinction between Gibbsian and non-Gibbsian measures, and give a rather complete catalogue of the known examples. Finally, we discuss the heuristic and numerical evidence on RG pathologies in the light of our rigorous theorems.Comment: 273 pages including 14 figures, Postscript, See also ftp.scri.fsu.edu:hep-lat/papers/9210/9210032.ps.

A mathematical framework for critical transitions: normal forms, variance and applications

Critical transitions occur in a wide variety of applications including mathematical biology, climate change, human physiology and economics. Therefore it is highly desirable to find early-warning signs. We show that it is possible to classify critical transitions by using bifurcation theory and normal forms in the singular limit. Based on this elementary classification, we analyze stochastic fluctuations and calculate scaling laws of the variance of stochastic sample paths near critical transitions for fast subsystem bifurcations up to codimension two. The theory is applied to several models: the Stommel-Cessi box model for the thermohaline circulation from geoscience, an epidemic-spreading model on an adaptive network, an activator-inhibitor switch from systems biology, a predator-prey system from ecology and to the Euler buckling problem from classical mechanics. For the Stommel-Cessi model we compare different detrending techniques to calculate early-warning signs. In the epidemics model we show that link densities could be better variables for prediction than population densities. The activator-inhibitor switch demonstrates effects in three time-scale systems and points out that excitable cells and molecular units have information for subthreshold prediction. In the predator-prey model explosive population growth near a codimension two bifurcation is investigated and we show that early-warnings from normal forms can be misleading in this context. In the biomechanical model we demonstrate that early-warning signs for buckling depend crucially on the control strategy near the instability which illustrates the effect of multiplicative noise.Comment: minor corrections to previous versio

Validation study of the prognostic value of cyclin-dependent kinase (CDK)-based risk in Caucasian breast cancer patients

In a Japanese study, cyclin-dependent kinase (CDK) based risk determined by CDK 1 and 2 activities was associated with risk of distance recurrence in early breast cancer patients. The aim of our study was to validate this risk categorization in European early breast cancer patients. We retrospectively analyzed frozen breast cancer specimens of 352 Dutch patients with histologically confirmed primary invasive early breast cancer. CDK-based risk was determined in tumour tissues by calculating a risk score (RS) according to kinases activity and protein mass concentration assay without the knowledge of outcome. Determination of CDK-based risk was feasible in 184 out of 352 (52%) tumours. Median follow-up of these patients was 15 years. In patients not receiving systemic treatment, the proportions of risk categories were 44% low, 16% intermediate, and 40% high CDK-based risk. These groups remained significant after univariate and multivariate Cox-regression analysis. Factors associated with a shorter distant recurrence-free period were positive lymph nodes, mastectomy with radiotherapy, and high CDK-based risk. There was no significant correlation with overall survival (OS). CDK-based risk is a prognostic marker of distance recurrence of patients with early breast cancer. More validation would be warranted to use of CDK-based risk into clinical practice

Planck intermediate results. XXI. Comparison of polarized thermal emission from Galactic dust at 353 GHz with interstellar polarization in the visible

The Planck survey provides unprecedented full-sky coverage of the submillimetre polarized emission from Galactic dust. In addition to the information on the direction of the Galactic magnetic field, this also brings new constraints on the properties of dust. The dust grains that emit the radiation seen by Planck in the submillimetre also extinguish and polarize starlight in the visible. Comparison of the polarization of the emission and of the interstellar polarization on selected lines of sight probed by stars provides unique new diagnostics of the emission and light scattering properties of dust, and therefore of the important dust model parameters, composition, size, and shape. Using ancillary catalogues of interstellar polarization and extinction of starlight, we obtain the degree of polarization, p(V), and the optical depth in the V band to the star, tau(V). Toward these stars we measure the submillimetre polarized intensity, P-S, and total intensity, I-S,I- in the Planck 353 GHz channel. We compare the column density measure in the visible, E(B - V), with that inferred from the Planck product map of the submillimetre dust optical depth and compare the polarization direction (position angle) in the visible with that in the submillimetre. For those lines of sight through the di ff use interstellar medium with comparable values of the estimated column density and polarization directions close to orthogonal, we correlate properties in the submillimetre and visible to find two ratios, R-S/V = (P-S/I-S) = (p(V)/tau(V)) and R-P/p = P-S/p(V), the latter focusing directly on the polarization properties of the aligned grain population alone. We find R-S/V = 4.2, with statistical and systematic uncertainties 0.2 and 0.3, respectively, and R-P/p = 5.4 MJy sr(-1), with uncertainties 0.2 and 0.3 MJy sr(-1), respectively. Our estimate of R-S/V is compatible with predictions based on a range of polarizing dust models that have been developed for the di ff use interstellar medium. This estimate provides new empirical validation of many of the common underlying assumptions of the models, but is not yet very discriminating among them. However, our estimate of R-P/p is not compatible with predictions, which are too low by a factor of about 2.5. This more discriminating diagnostic, R-P/p, indicates that changes to the optical properties in the models of the aligned grain population are required. These new diagnostics, together with the spectral dependence in the submillimetre from Planck, will be important for constraining and understanding the full complexity of the grain models, and for interpreting the Planck thermal dust polarization and refinement of the separation of this contamination of the cosmic microwave background.Peer reviewe