Grain-boundary migration in KCl bicrystals

Boundary migration in melt-grown bicrystals of KCl containing pure twist boundaries was investigated. The experiments involve the use of bicrystal specimens in the shape of right-triangular prisms with the boundary parallel to one side

Lagrangian analysis of alignment dynamics for isentropic compressible magnetohydrodynamics

After a review of the isentropic compressible magnetohydrodynamics (ICMHD) equations, a quaternionic framework for studying the alignment dynamics of a general fluid flow is explained and applied to the ICMHD equations.Comment: 12 pages, 2 figures, submitted to a Focus Issue of New Journal of Physics on "Magnetohydrodynamics and the Dynamo Problem" J-F Pinton, A Pouquet, E Dormy and S Cowley, editor

Learning and research for sustainable agro-ecosystems by both farmers and scientists.

This research explored how farming businesses learn, make decisions, benchmark and carry out their own informal experimentation to find the system that meet their needs and their local ecological context. The research also examined how farming businesses and scientific researchers can collaborate. This required a greater understanding amongst scientists and between scientists and businesses, recognising each other's strengths and weaknesses and finding ways of working together. This interdisciplinary subject will be examined by a team of social, environmental and biological researchers, examining ten cases of farmer researcher collaboration with the aim of identifying good practice in interdisciplinary research on agro ecosystems in UK agriculture

Developing a partcipatory approach to seed production and varietal selection

The performance of UK winter wheat varieties was tested under organic conditions involving farmer participation. Three breadmaking varieties (Hereward, Solstice and Xi19) and their mixture (1:1:1) were grown at 19 UK farms in 2003/04 and 2004/05. The variability of productivity on organic farms was illustrated with more variation among farm sites than among varieties. Seed health was generally high over all sites. Although the trials were successful, more time was needed at project initiation to improve farmer involvement. Some farmers expected more researcher visits, and were reticent about assessing the trials themselves. In contrast, some participants valued the variety performance data on their farms particularly when related to that of other growers. The balance between the goals of the researchers relative to the farmers needs to be defined at project initiation

Relativistic Doppler effect: universal spectra and zeptosecond pulses

We report on a numerical observation of the train of zeptosecond pulses produced by reflection of a relativistically intense femtosecond laser pulse from the oscillating boundary of an overdense plasma because of the Doppler effect. These pulses promise to become a unique experimental and technological tool since their length is of the order of the Bohr radius and the intensity is extremely high $\propto 10^{19}$ W/cm$^2$. We present the physical mechanism, analytical theory, and direct particle-in-cell simulations. We show that the harmonic spectrum is universal: the intensity of $n$th harmonic scales as $1/n^{p}$ for $n < 4\gamma^2$, where $\gamma$ is the largest $\gamma$--factor of the electron fluid boundary, $p=3$ and $p=5/2$ for the broadband and quasimonochromatic laser pulses respectively.Comment: 4 figure

Exponentially growing solutions in homogeneous Rayleigh-Benard convection

It is shown that homogeneous Rayleigh-Benard flow, i.e., Rayleigh-Benard turbulence with periodic boundary conditions in all directions and a volume forcing of the temperature field by a mean gradient, has a family of exact, exponentially growing, separable solutions of the full non-linear system of equations. These solutions are clearly manifest in numerical simulations above a computable critical value of the Rayleigh number. In our numerical simulations they are subject to secondary numerical noise and resolution dependent instabilities that limit their growth to produce statistically steady turbulent transport.Comment: 4 pages, 3 figures, to be published in Phys. Rev. E - rapid communication

A participatory methodology for large scale field trials in the UK

Farmer participation was essential in developing a uniquely useful set of wheat variety trials data on a wide range of organic farms over two years. Although the trials were successful, it became clear that some of the participating farmers felt there were some limitations in the process. These included a lack of ownership in the project and a concern for more researcher help. It was clear that a greater time in-vestment was needed at the start of the project to help with farmer understanding and ownership. De-spite the negative comments, farmers appreciated their involvement, particularly in contrasting their own views and information with that from the wider scene. Farmer participation is essential for systems-level research and this project helped to develop a small core of trained farmers and researchers

The gradient of potential vorticity, quaternions and an orthonormal frame for fluid particles

The gradient of potential vorticity (PV) is an important quantity because of the way PV (denoted as $q$) tends to accumulate locally in the oceans and atmospheres. Recent analysis by the authors has shown that the vector quantity \bdB = \bnabla q\times \bnabla\theta for the three-dimensional incompressible rotating Euler equations evolves according to the same stretching equation as for \bom the vorticity and \bB, the magnetic field in magnetohydrodynamics (MHD). The \bdB-vector therefore acts like the vorticity \bom in Euler's equations and the \bB-field in MHD. For example, it allows various analogies, such as stretching dynamics, helicity, superhelicity and cross helicity. In addition, using quaternionic analysis, the dynamics of the \bdB-vector naturally allow the construction of an orthonormal frame attached to fluid particles\,; this is designated as a quaternion frame. The alignment dynamics of this frame are particularly relevant to the three-axis rotations that particles undergo as they traverse regions of a flow when the PV gradient \bnabla q is large.Comment: Dedicated to Raymond Hide on the occasion of his 80th birthda

Propionibacterium acnes bacteriophages display limited genetic diversity and broad killing activity against bacterial skin isolates.

UnlabelledInvestigation of the human microbiome has revealed diverse and complex microbial communities at distinct anatomic sites. The microbiome of the human sebaceous follicle provides a tractable model in which to study its dominant bacterial inhabitant, Propionibacterium acnes, which is thought to contribute to the pathogenesis of the human disease acne. To explore the diversity of the bacteriophages that infect P. acnes, 11 P. acnes phages were isolated from the sebaceous follicles of donors with healthy skin or acne and their genomes were sequenced. Comparative genomic analysis of the P. acnes phage population, which spans a 30-year temporal period and a broad geographic range, reveals striking similarity in terms of genome length, percent GC content, nucleotide identity (&gt;85%), and gene content. This was unexpected, given the far-ranging diversity observed in virtually all other phage populations. Although the P. acnes phages display a broad host range against clinical isolates of P. acnes, two bacterial isolates were resistant to many of these phages. Moreover, the patterns of phage resistance correlate closely with the presence of clustered regularly interspaced short palindromic repeat elements in the bacteria that target a specific subset of phages, conferring a system of prokaryotic innate immunity. The limited diversity of the P. acnes bacteriophages, which may relate to the unique evolutionary constraints imposed by the lipid-rich anaerobic environment in which their bacterial hosts reside, points to the potential utility of phage-based antimicrobial therapy for acne.ImportancePropionibacterium acnes is a dominant member of the skin microflora and has also been implicated in the pathogenesis of acne; however, little is known about the bacteriophages that coexist with and infect this bacterium. Here we present the novel genome sequences of 11 P. acnes phages, thereby substantially increasing the amount of available genomic information about this phage population. Surprisingly, we find that, unlike other well-studied bacteriophages, P. acnes phages are highly homogeneous and show a striking lack of genetic diversity, which is perhaps related to their unique and restricted habitat. They also share a broad ability to kill clinical isolates of P. acnes; phage resistance is not prevalent, but when detected, it appears to be conferred by chromosomally encoded immunity elements within the host genome. We believe that these phages display numerous features that would make them ideal candidates for the development of a phage-based therapy for acne