Biometric traits as a tool for the identification and breeding of coffea canephora genotypes

grants n. 84320893 grants n. 420789/2016-2 n. 304687/2017-0 E-26/202.323/2017 UID/04129/2020 UIDP/04035/2020Cross-pollination and gametophytic self-incompatibility reduce the stability of Coffea canephora genotypes. This is an important crop for Brazil, the largest producer of this type of coffee and also a major exporter. The study of biometric characteristics is essential to assist in the selection of promising plant materials. We examined the diversity of morpho-agronomic traits of genotypes of C. canephora cv. Conilon through the evaluation of branch and leaf parameters. Assessments included plagiotropic branch length, number of nodes in plagiotropic branches, distance between nodes in plagiotropic branches, orthotropic branch length, number of nodes in orthotropic branch, distance between nodes in orthotropic branch, plant height, canopy diameter, leaf length, leaf width, and leaf area in two periods. The data from the 43 coffee genotypes were tested by multivariate and cluster analyses. Six groups were formed by the Tocher optimization method, and five groups by the unweighted pair group method with arithmetic mean (UPGMA) hierarchical method, suggesting an important genetic variability among plant materials. Both Tocher optimization and UPGMA hierarchical methods were consistent for clustering the genotypes, ordering them in six and five dissimilar groups, respectively, with genotypes 25 and 37 standing out with the greatest dissimilarity, constituting isolated groups by both methods. Pearson’s correlation ranged from very weak to very strong, positive and negative, among the characteristics, as also shown by principal component analyses. These analyses indicated the morpho-agronomic traits with a greater degree of correlation, assisting in the choice of promising plant materials. The genetic parameters estimates demonstrate genetic variability and thus breeding potential within the Conilon coffee genotypes studied. These results emphasize the usefulness of biometric evaluations as a tool for the identification and breeding of genotypes to compose new Conilon coffee cultivars.publishersversionpublishe

Understanding the Impact of Drought in Coffea Genotypes: Transcriptomic Analysis Supports a Common High Resilience to Moderate Water Deficit but a Genotype Dependent Sensitivity to Severe Water Deficit

Water scarcity is the most significant factor limiting coffee production, although some cultivars can still have important drought tolerance. This study analyzed leaf transcriptomes of two coffee cultivars with contrasting physiological responses, Coffea canephora cv. CL153 and Coffea. arabica cv. Icatu, subjected to moderate (MWD) or severe water deficits (SWD). We found that MWD had a low impact compared with SWD, where 10% of all genes in Icatu and 17% in CL153 reacted to drought, being mainly down-regulated upon stress. Drought triggered a genotype-specific response involving the up-regulation of reticuline oxidase genes in CL153 and heat shock proteins in Icatu. Responsiveness to drought also included desiccation protectant genes, but primarily, aspartic proteases, especially in CL153. A total of 83 Transcription Factors were found engaged in response to drought, mainly up-regulated, especially under SWD. Together with the enrollment of 49 phosphatases and 272 protein kinases, results suggest the involvement of ABA-signaling processes in drought acclimation. The integration of these findings with complementing physiological and biochemical studies reveals that both genotypes are more resilient to moderate drought than previously thought and suggests the existence of post-transcriptional mechanisms modulating the response to drought.info:eu-repo/semantics/publishedVersio

Impact of climate changes in the suitable areas for Coffea arabica L. production in Mozambique: Agroforestry as an alternative management system to strengthen crop sustainability

Climate changes (CC) are a main global phenomenon, with a worldwide impact on natural and agricultural ecosystems. The objective of this study was to analyse the potential impact of future CC on the suitability of areas for rainfed coffee growth, both at the Mozambique national scale and in the Gorongosa Mountain, under Agroforestry (AFS) and Full Sun (FS) management systems. The latter study site is part of the Gorongosa National Park (PNG), one of the most biodiverse places and an outstanding case of successful ecosystem restoration, including the rainforest from Gorongosa Mountain. Additionally, coffee cultivation in PNG under AFS is part of a strategy to strengthen the socio-economic sustainability of the local population, and the recovery of biodiversity in a degraded tropical rainforest ecosystem. Future climate assessments were elaborated through bioclimatic and biophysical variables (Elevation), with Coffea arabica L. being modeled under the current conditions and four global climate models (GCMs) using four Shared Socio-economic Pathways (SSPs). Isothermality, annual precipitation, and altitude were the most important variables influencing suitable areas in Mozambique. The analysis revealed that currently suitable areas where C. arabica is grown in Mozambique will be negatively affected under future scenarios (SSP126 to SSP585) in both systems (AFS and FS), although with clear worst impacts for FS. Under AFS, suitable areas will be reduced between about half and two-thirds by 2041–2060, and up to 91% by 2081–2100 (depending on scenarios) at the whole country level. Additionally, in Gorongosa Mountain, almost all scenarios point to a 30% reduction of the suitable area by 2041–2060, reaching 50% by 2081–2100, both in SSP126 and SSP245 scenarios. In sharp contrast, at the whole country level, the FS system is projected to be unsuitable for most of Mozambique, with area losses close to or above two-thirds already in 2021–2040, and greater than 80% by 2061–2080. Under this system, the projections were even more dramatic, pointing to a total absence of adequate areas at Gorongosa Mountain already by 2021–2040. Overall, our study provides clear evidence that the implementation of AFS greatly reduces CC deleterious impacts, being crucial to guarantee the sustainability of the coffee crop in the near future.info:eu-repo/semantics/publishedVersio

Agroforestry as an alternative management system to strengthen crop sustainability

Funding Information: This work was supported by national funds of Camões – Instituto da Cooperação e da Língua (Portugal), Agência Brasileira de Cooperação (Brazil), and Parque Nacional da Gorongosa (Mozambique), through the project GorongosaCafé (TriCafé), as well as through Portuguese national funds from Fundação para a Ciência e a Tecnologia, I.P. (FCT), through the grants SFRH/BD/135357/2017 (C. Cassamo), and the Scientific Employment Stimulus - Individual Call (CEEC Individual) - 2021.01107.CEECIND/CP1689/CT0001 (I. Marques), and to the research units UIDB/00239/2020 (CEF), UIDB/00329/2020 (CE3C) and UIDP/04035/2020 (GeoBioTec). Funding from CNPq, Brazil (F. Partelli) is also greatly acknowledged. Funding Information: This work was supported by national funds of Camões – Instituto da Cooperação e da Língua (Portugal), Agência Brasileira de Cooperação (Brazil), and Parque Nacional da Gorongosa (Mozambique), through the project GorongosaCafé (TriCafé), as well as through Portuguese national funds from Fundação para a Ciência e a Tecnologia , I.P. (FCT), through the grants SFRH/BD/135357/2017 (C. Cassamo), and the Scientific Employment Stimulus - Individual Call (CEEC Individual) - 2021.01107.CEECIND/CP1689/CT0001 (I. Marques), and to the research units UIDB/00239/2020 (CEF), UIDB/00329/2020 (CE3C) and UIDP/04035/2020 (GeoBioTec). Funding from CNPq , Brazil (F. Partelli) is also greatly acknowledged. Publisher Copyright: © 2023 The AuthorsClimate changes (CC) are a main global phenomenon, with a worldwide impact on natural and agricultural ecosystems. The objective of this study was to analyse the potential impact of future CC on the suitability of areas for rainfed coffee growth, both at the Mozambique national scale and in the Gorongosa Mountain, under Agroforestry (AFS) and Full Sun (FS) management systems. The latter study site is part of the Gorongosa National Park (PNG), one of the most biodiverse places and an outstanding case of successful ecosystem restoration, including the rainforest from Gorongosa Mountain. Additionally, coffee cultivation in PNG under AFS is part of a strategy to strengthen the socio-economic sustainability of the local population, and the recovery of biodiversity in a degraded tropical rainforest ecosystem. Future climate assessments were elaborated through bioclimatic and biophysical variables (Elevation), with Coffea arabica L. being modeled under the current conditions and four global climate models (GCMs) using four Shared Socio-economic Pathways (SSPs). Isothermality, annual precipitation, and altitude were the most important variables influencing suitable areas in Mozambique. The analysis revealed that currently suitable areas where C. arabica is grown in Mozambique will be negatively affected under future scenarios (SSP126 to SSP585) in both systems (AFS and FS), although with clear worst impacts for FS. Under AFS, suitable areas will be reduced between about half and two-thirds by 2041–2060, and up to 91% by 2081–2100 (depending on scenarios) at the whole country level. Additionally, in Gorongosa Mountain, almost all scenarios point to a 30% reduction of the suitable area by 2041–2060, reaching 50% by 2081–2100, both in SSP126 and SSP245 scenarios. In sharp contrast, at the whole country level, the FS system is projected to be unsuitable for most of Mozambique, with area losses close to or above two-thirds already in 2021–2040, and greater than 80% by 2061–2080. Under this system, the projections were even more dramatic, pointing to a total absence of adequate areas at Gorongosa Mountain already by 2021–2040. Overall, our study provides clear evidence that the implementation of AFS greatly reduces CC deleterious impacts, being crucial to guarantee the sustainability of the coffee crop in the near future.publishersversionpublishe

Mitigation of the Negative Impact of Warming on the Coffee Crop: The Role of Increased Air [CO2] and Management Strategies

Crop sustainability can be threatened by new environmental challenges regarding predicted climate changes and global warming. Therefore, the study of real biological impacts of future environmental conditions (e.g., increased air [CO2], supra-optimal temperature and water scarcity) on crop plants, as well as the re-evaluation of management procedures and strategies, must be undertaken in order to improve crop adaptation and promote mitigation of negative environmental impacts, thus affording crop resilience. Coffee is a tropical crop that is grown in more than 80 countries, making it one of the world’s most traded agricultural products, while involving millions of people worldwide in the whole chain of value. It has been argued that this crop will be highly affected by climate changes, resulting in decreases in both suitable areas for cultivation and productivity, as well as impaired beverage quality in the near future. Here, we report recent findings regarding coffee species exposure to combined supra-optimal air temperatures and enhanced air [CO2], and impacts of drought stress on the crop. Ultimately, we discuss key strategies to improve coffee performance in the context of new environmental scenarios. The recent findings clearly show that high [CO2] has a positive impact on coffee plants, increasing their tolerance to high temperatures. This has been related to a better plant vigor, to the triggering of protective mechanisms, and to a higher functional status of the photosynthetic machinery. Even so, coffee plant is expected to suffer from water scarcity in a changing world. Therefore, discussion is focused on some important management strategies (e.g., shade systems, crop management and soil covering and terracing), which can be implemented to improve coffee performance and sustain coffee production in a continually changing environment

Lipid profile adjustments may contribute to warming acclimation and to heat impact mitigation by elevated [CO2] in Coffea spp

This work was supported by European Union, Program Horizon 2020, call H2020-SFS-2016-2, action RIA, and Portuguese national funds from Fundacao para a Ciencia e a Tecnologia (project PTDC/ASP-AGR/31257/2017; Funding from CNPq (fellowships to E. Campostrini, F.L. Partelli, and F.M. DaMatta) is also acknowledged.An unexpected heat resilience, and the mitigation of heat impacts by elevated [CO2] were recently reported in Coffea spp. Plants must maintain membrane fluidity and integrity to cope with temperature changes, which requires an adequate lipid dynamics. This work provides the lipid profile (galactolipids, GL; phospholipids, PL; sulfolipids, SL) of chloroplast membranes, and the expression of a set of genes related to lipid metabolism in Coffea arabica L. (cv. Icatu and IPR108) and C. canephora cv. Conilon CL153, under elevated [CO2] (380 or 700 μL L−1), heat (25/20, 31/25, 37/30 and 42/34 °C, day/night) and their interaction. Major membrane lipids alterations, different among genotypes, included: A) responsiveness of total fatty acids (TFAs) synthesis to [CO2] (except IPR108) and heat (except CL153); stronger remodeling (unsaturation degree) in the 700-plants from 37/30 °C to 42/34 °C, coordinated at transcriptional level with the down-regulation of fatty acid desaturase FAD3 gene (C. arabica) and up-regulation of lipoxygenase genes LOX5A (CL153 and Icatu) and LOX5B (Icatu) at the highest temperature; B) quantitative and qualitative modifications in GL (monogalactosyldiacylglycerol, MGDG; digalactosyldiacylglycerol, DGDG), PL (phosphatidylcholine, PC; phosphatidylglycerol, PG), and SL (sulfoquinovosyldiacylglycerol, SQDG) classes, prompted by heat, elevated [CO2], and, especially, the interaction, in CL153 and Icatu. Overall membrane enrichment with MGDG and DGDG as a result of heat and [CO2] interaction in these genotypes, but at the highest temperature only in Icatu the high [CO2] maintained greater contents and unsaturation values of these GLs than in the 380-plants. C) Among PL classes, PG seems to play an active role in heat acclimation of C. arabica genotypes, increasing in 700-plants at 42/34 °C. Globally, Icatu often showed changes closer to those of heat tolerant cv. CL153 than to cv. IPR108. Overall, lipid profile adjustments in chloroplast membranes, from TFAs bulk until FA unsaturation within each class, are expected to contribute to long-term acclimation to climate changes in coffee plant.publishersversionpublishe

High-resolution shotgun proteomics reveals that increased air [CO2] amplifies the acclimation response of coffea species to drought regarding antioxidative, energy, sugar, and lipid dynamics

Funding Information: This work received funding support from the European Union's Horizon 2020 research and innovation program (grant agreement No 727934 , project BreedCAFS), and from national funds from Fundação para a Ciência e a Tecnologia, I.P. (FCT) , Portugal, through the project PTDC/ASP-AGR/31257/2017 , and the research units UIDB/00239/2020 ( CEF ), and UIDP/04035/2020 (GeoBioTec) and under the Scientific Employment Stimulus - Individual Call (CEEC Individual) - 2021.01107.CEECIND/CP1689/CT0001 (IM) . Fellowships from the Conselho Nacional de Desenvolvimento Científico e Tecnológico, Brazil (CNPq) , (to F.M. DaMatta and F.L. Partelli), and Fundação de Amparo à Pesquisa do Estado de Minas Gerais, Brazil (FAPEMIG, projects CRA-RED-00053-16 and APQ 01512-18 , to F.M. DaMatta) are also greatly acknowledged. Publisher Copyright: © 2022 Elsevier GmbHAs drought threatens crop productivity it is crucial to characterize the defense mechanisms against water deficit and unveil their interaction with the expected rise in the air [CO2]. For that, plants of Coffea canephora cv. Conilon Clone 153 (CL153) and C. arabica cv. Icatu grown under 380 (aCO2) or 700 μL L−1 (eCO2) were exposed to moderate (MWD) and severe (SWD) water deficits. Responses were characterized through the activity and/or abundance of a selected set of proteins associated with antioxidative (e.g., Violaxanthin de-epoxidase, Superoxide dismutase, Ascorbate peroxidases, Monodehydroascorbate reductase), energy/sugar (e.g., Ferredoxin-NADP reductase, NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, sucrose synthase, mannose-6-phosphate isomerase, Enolase), and lipid (Lineolate 13S-lipoxygenase) processes, as well as with other antioxidative (ascorbate) and protective (HSP70) molecules. MWD caused small changes in both genotypes regardless of [CO2] level while under the single imposition to SWD, only Icatu showed a global reinforcement of most studied proteins supporting its tolerance to drought. eCO2 alone did not promote remarkable changes but strengthened a robust multi-response under SWD, even supporting the reversion of impacts already observed by CL153 at aCO2. In the context of climate changes where water constraints and [CO2] levels are expected to increase, these results highlight why eCO2 might have an important role in improving drought tolerance in Coffea species.publishersversionpublishe