Proteomic Investigations of Complex I Composition: How to Define a Subunit?

Complex I is present in almost all aerobic species. Being the largest complex of the respiratory chain, it has a central role in energizing biological membranes and is essential for many organisms. Bacterial complex I is composed of 14 subunits that are sufficient to achieve the respiratory functions. Eukaryotic enzymes contain orthologs of the 14 bacterial subunits and around 30 additional subunits. This complexity suggests either that complex I requires more stabilizing subunits in mitochondria or that it fulfills additional functions. In many organisms recent work on complex I concentrated on the determination of its exact composition. This review summarizes the work done to elucidate complex I composition in the model plant Arabidopsis and proposes a model for the organization of its 44 confirmed subunits. The comparison of the different studies investigating the composition of complex I across species identifies sample preparation for the proteomic analysis as critical to differentiate between true subunits, assembly factors, or proteins associated with complex I. Coupling comparative proteomics with biochemical or genetic studies is thus required to define a subunit and its function within the complex

Image Filtering Using Morphological Amoebas

International audienceThis article presents the use of anisotropic dynamic structuring elements, or amoebas, in order to build content-aware noise reduction filters. The amoeba is the ball defined by a special geodesic distance computed for each pixel, and can be used as a kernel for many kinds of filters and morphological operators. 1. Introduction Noise is possibly the most annoying problem in the field of image processing. There are two ways to work around it: either design particularly robust algorithms that can work in noisy environments, or try to eliminate the noise in a first step while losing as little relevant information as possible and consequently use a normally robust algorithm. There are of course many algorithms that aim at reducing the amount of noise in images. In mathematical morphology filters can be, broadly-speaking, divided into two groups: 1 alternate sequential filters based on morphological openings and clos-ings, that are quite effective but also remove thin elements such as canals or peninsulas. Even worse, they can displace the contours and thus create additional problems in a segmentation application

Interstate Vibronic Coupling Constants Between Electronic Excited States for Complex Molecules

In the construction of diabatic vibronic Hamiltonians for quantum dynamics in the excited-state manifold of molecules, the coupling constants are often extracted solely from information on the excited-state energies. Here, a new protocol is applied to get access to the interstate vibronic coupling constants at the time-dependent density functional theory level through the overlap integrals between excited-state adiabatic auxiliary wavefunctions. We discuss the advantages of such method and its potential for future applications to address complex systems, in particular those where multiple electronic states are energetically closely lying and interact. As examples, we apply the protocol to the study of prototype rhenium carbonyl complexes [Re(CO)$_3$(N,N)(L)]$^{n+}$ for which non-adiabatic quantum dynamics within the linear vibronic coupling model and including spin-orbit coupling have been reported recently.Comment: 36 pages, 7 figures, 4 table

Mitochondria in parasitic plants

Plant mitochondrial genomes are renowned for their structural complexity, extreme variation in size and mutation rates, and ability to incorporate foreign DNA. Parasitic flowering plants are no exception, and the close association between parasite and host may even enhance the likelihood of horizontal gene transfer (HGT) between them. Recent studies on mistletoes (Viscum) have revealed that these parasites have lost an exceptional number of mitochondrial genes, including all complex I genes of the respiratory chain. At the same time, an altered respiratory pathway has been demonstrated. Here we review the current understanding of mitochondrial evolution in parasitic plants with a special emphasis on HGT to and from parasite mitochondrial genomes, as well as the uniquely altered mitochondria in Viscum and related plants. © 2020 The Author

Die Proteinausstattung eines einzelnen pflanzlichen Mitochondriums

The structure and function of mitochondria have been characterized with increasing precision. How the protein inventory defines the characteristics of the organelle remains insufficiently understood, however. Recently we devised a quantitative proteomic approach to estimate the copy numbers of proteins in a single plant mitochondrion, as physical operational unit in the cell. We illustrate how such a simple thought experiment can give fascinating insights into how a mitochondrion works

Absence of Complex I Is Associated with Diminished Respiratory Chain Function in European Mistletoe

Parasitism is a life history strategy found across all domains of life whereby nutrition is obtained from a host. It is often associated with reductive evolution of the genome, including loss of genes from the organellar genomes [1, 2]. In some unicellular parasites, the mitochondrial genome (mitogenome) has been lost entirely, with far-reaching consequences for the physiology of the organism [3, 4]. Recently, mitogenome sequences of several species of the hemiparasitic plant mistletoe (Viscum sp.) have been reported [5, 6], revealing a striking loss of genes not seen in any other multicellular eukaryotes. In particular, the nad genes encoding subunits of respiratory complex I are all absent and other protein-coding genes are also lost or highly diverged in sequence, raising the question what remains of the respiratory complexes and mitochondrial functions. Here we show that oxidative phosphorylation (OXPHOS) in European mistletoe, Viscum album, is highly diminished. Complex I activity and protein subunits of complex I could not be detected. The levels of complex IV and ATP synthase were at least 5-fold lower than in the non-parasitic model plant Arabidopsis thaliana, whereas alternative dehydrogenases and oxidases were higher in abundance. Carbon flux analysis indicates that cytosolic reactions including glycolysis are greater contributors to ATP synthesis than the mitochondrial tricarboxylic acid (TCA) cycle. Our results describe the extreme adjustments in mitochondrial functions of the first reported multicellular eukaryote without complex I

Semi-automated detection of ungulates using UAV imagery and reflective spectrometry

Supplementary electronic material 1: The ‘Adult Arabian Oryx’ rule set.In the field of species conservation, the use of unmanned aerial vehicles (UAV) is increasing in popularity as wildlife observation and monitoring tools. With large datasets created by UAV-based species surveying, the need arose to automate the detection process of the species. Although the use of computer learning algorithms for wildlife detection from UAV-derived imagery is an increasing trend, it depends on a large amount of imagery of the species to train the object detector effectively. However, there are alternatives like object-based image analysis (OBIA) software available if a large amount of imagery of the species is not available to develop a computer-learned object detector. The study tested the semi-automated detection of reintroduced Arabian Oryx (O. leucoryx), using the specie's coat sRGB-colour profiles as input for OBIA to identify adult O. leucoryx, applied to UAV acquired imagery. Our method uses lab-measured spectral reflection of hair sample values, collected from captive O. leucoryx as an input for OBIA ruleset to identify adult O. leucoryx from UAV survey imagery using semi-automated supervised classification. The converted mean CIE Lab reflective spectrometry colour values of n = 50 hair samples of adult O. leucoryx to 8-bit sRGB-colour profiles of the species resulted in the red-band value of 157.450, the green-band value of 151.390 and blue-band value of 140.832. The sRGB values and a minimum size permitter were added as the input of the OBIA ruleset identified adult O. leucoryx with a high degree of efficiency when applied to three UAV census datasets. Using species sRGB-colour profiles to identify re-introduced O. leucoryx and extract location data using a non-invasive UAV-based tool is a novel method with enormous application possibilities. Coat refection sRGB-colour profiles can be developed for a range of species and customised to autodetect and classify the species from remote sensing data.The Czech University of Life Sciences Prague and by the Ministry of Education, Youth and Sports, Czechia.https://www.elsevier.com/locate/jenvmanhj2023Veterinary Tropical Disease

Azithromycin fails to reduce increased expression of neutrophil-related cytokines in primary-cultured epithelial cells from cystic fibrosis mice

AbstractBackgroundBeneficial effects of azithromycin in cystic fibrosis (CF) have been reported, however, its mechanism of action remains unclear. The present study aimed at investigating the effect of azithromycin on CF airway epithelial cells.MethodsPrimary cultures of purified tracheal epithelial cells from F508del and normal homozygous mice were established. Responses to lipopolysaccharide from Pseudomonas aeruginosa (LPS, 0.1 µg/ml) on mRNA expression of neutrophil-related chemokines, pro- and anti-inflammatory cytokines were investigated in the presence or the absence of azithromycin (1 µg/ml).ResultsCF airway epithelial cells showed upregulation of MIP-2 and KC responses to LPS, and azithromycin failed to downregulate these responses. In contrast, in CF cells, azithromycin increased KC and TNF-α expression under non-stimulated and LPS-stimulated conditions, respectively. In non-CF cells, the macrolide potentiated the LPS response on MIP-2 and on IL-10.ConclusionsAirway epithelial cells contribute to the dysregulated immune processes in CF. Azithromycin rather stimulates cytokine expression in CF airway epithelial cells