GLORIA - A globally representative hyperspectral in situ dataset for optical sensing of water quality

The development of algorithms for remote sensing of water quality (RSWQ) requires a large amount of in situ data to account for the bio-geo-optical diversity of inland and coastal waters. The GLObal Reflectance community dataset for Imaging and optical sensing of Aquatic environments (GLORIA) includes 7,572 curated hyperspectral remote sensing reflectance measurements at 1 nm intervals within the 350 to 900 nm wavelength range. In addition, at least one co-located water quality measurement of chlorophyll a, total suspended solids, absorption by dissolved substances, and Secchi depth, is provided. The data were contributed by researchers affiliated with 59 institutions worldwide and come from 450 different water bodies, making GLORIA the de-facto state of knowledge of in situ coastal and inland aquatic optical diversity. Each measurement is documented with comprehensive methodological details, allowing users to evaluate fitness-for-purpose, and providing a reference for practitioners planning similar measurements. We provide open and free access to this dataset with the goal of enabling scientific and technological advancement towards operational regional and global RSWQ monitoring

Plenary: Exploring toxic cyanobacteria blooms using emerging technologies: From space to the benthos

Traditionally coastal systems have been monitored using ship-based sampling methods, which provide a discrete spatial and temporal snapshot of current conditions. These discrete sampling strategies often miss key environmental shifts that lead to high variability in bloom biomass and toxin concentrations (e.g. 2014 Toledo Water Crisis). Understanding and interpreting the complex interactions between biological, chemical, and physical variables in coastal systems require versatile monitoring approaches. To enhance our spatio-temporal resolution, NOAA is developing a monitoring network in Lake Erie to study and track cyanobacteria harmful algal blooms using traditional methods and emerging technologies. Weekly monitoring at fixed sampling sites provides baseline environmental conditions. The extent of bloom biomass and phytoplankton community composition is determined through daily satellite and weekly hyperspectral imaging. Paired with physical observations and modeling, bloom biomass and toxin concentration trajectories are forecasted up to 5 days in the future. Within the water column, real-time nutrient buoys and second generation (2G) Environmental Sample Processors (ESP) provided near real-time relevant water quality data and particulate microcystin concentrations, respectively. With colleagues at the Monterey Bay Aquarium Research Institute (MBARI) we have tested a 3rd Generation (3G) ESP, an autonomous molecular diagnostic device integrated with an uncrewed underwater vehicle, capable of collecting eDNA and conducting near real-time toxin (e.g., microcystin) analysis using an embedded Surface Plasmon Resonance (SPR) module. Finally, field-based experiments evaluate the role of resuspension events, cell buoyancy, resting cells, and community dynamics on bloom development. This collection of actionable temporal and spatial environmental data is provided to the scientific community, managers, and public stakeholders to support decision making and enhance our understanding of bloom succession

Osmotic stress triggers toxin production by the dinoflagellate Karenia brevis

With the increase in frequency of harmful algal blooms (HABs) worldwide, a better understanding of the mechanisms that influence toxin production is needed. Karenia brevis, the major HAB dinoflagellate in the Gulf of Mexico, produces potent neurotoxins, known as brevetoxins. Human health is directly impacted by blooms of K. brevis through consumption of shellfish contaminated by accumulated brevetoxins (neurotoxic shellfish poisoning) or from aerosolized brevetoxins in sea spray (reduced respiratory function); however, the reason for brevetoxin production has remained a mystery. Here we show that brevetoxin production increased dramatically in response to osmotic stress in three of the four K. brevis clones examined. By rapidly changing salinity to simulate a shift from oceanic conditions to a decreased salinity typical of coastal conditions, brevetoxin production was triggered. As a result, brevetoxin cell quota increased by >14-fold, while growth rate remained unchanged. Live images of K. brevis cells were also examined to assess changes in cell volume. In the K. brevis Wilson clone, cells responded quickly to hypoosmotic stress by increasing their brevetoxin cell quota from ∼10 to 160 pg of brevetoxin per cell, while cell volume remained stable. In contrast, the K. brevis SP1 clone, which has a consistently low brevetoxin cell quota (<1 pg per cell), was unable to balance the hypoosmotic stress, and although brevetoxin production remained low, average cell volume increased. Our findings close a critical gap in knowledge regarding mechanisms for toxin production in K. brevis by providing an explanation for toxin production in this harmful dinoflagellate

Impacts of elevated pCO\u3csub\u3e2\u3c/sub\u3e on estuarine phytoplankton biomass and community structure in two biogeochemically distinct systems in Louisiana, USA

© 2018 Ocean acidification has the potential to impact the ocean\u27s biogeochemical cycles and food web dynamics, with phytoplankton in the distinctive position to profoundly influence both, as individual phytoplankton species play unique roles in energy flow and element cycling. Previous studies have focused on short-term exposure of monocultures to low pH, but do not reflect the competitive dynamics within natural phytoplankton communities. This study explores the use of experimental microcosms to expose phytoplankton assemblages to elevated pCO2 for an extended period of time. Phytoplankton communities were collected from two biogeochemically distinct Louisiana estuaries, Caillou Lake (CL) and Barataria Bay (BB), and cultured in lab for 16 weeks while bubbling CO2 enriched air corresponding to current (400 ppm) and future (1000 ppm) pCO2 levels. Results suggest that elevated pCO2 does not implicitly catalyze an increase in phytoplankton biomass (chlorophyll a). While pigment data showcased a parabolic trend and microscopic observations revealed a loss in species diversity within each major taxonomic class. By the end of the 16-week incubation, 10 out of the 12 cultures had a community structure analogous to that of the startup phytoplankton assemblage collected from the field. Natural phytoplankton assemblages exposed to elevated pCO2 experienced multiple transitional states over the course of a 16-week incubation, indicating that there is no deterministic successional pathway dictated by coastal acidification but community adaptation was observed

Domoic Acid and <i>Pseudo-nitzschia</i> spp. Connected to Coastal Upwelling along Coastal Inhambane Province, Mozambique: A New Area of Concern

Harmful algal blooms (HABs) are increasing globally in frequency, persistence, and geographic extent, posing a threat to ecosystem and human health. To date, no occurrences of marine phycotoxins have been recorded in Mozambique, which may be due to absence of a monitoring program and general awareness of potential threats. This study is the first documentation of neurotoxin, domoic acid (DA), produced by the diatom Pseudo-nitzschia along the east coast of Africa. Coastal Inhambane Province is a biodiversity hotspot where year-round Rhincodon typus (whale shark) sightings are among the highest globally and support an emerging ecotourism industry. Links between primary productivity and biodiversity in this area have not previously been considered or reported. During a pilot study, from January 2017 to April 2018, DA was identified year-round, peaking during Austral winter. During an intense study between May and August 2018, our research focused on identifying environmental factors influencing coastal productivity and DA concentration. Phytoplankton assemblage was diatom-dominated, with high abundances of Pseudo-nitzschia spp. Data suggest the system was influenced by nutrient pulses resulting from coastal upwelling. Continued and comprehensive monitoring along southern Mozambique would provide critical information to assess ecosystem and human health threats from marine toxins under challenges posed by global change

Image_1_Production of Calcium-Binding Proteins in Crassostrea virginica in Response to Increased Environmental CO2 Concentration.PDF

<p>Biomineralization is a complexed process by organisms producing protective and supportive structures. Employed by mollusks, biomineralization enables creation of external shells for protection against environmental stressors. The shell deposition mechanism is initiated in the early stages of development and is dependent upon the concentration and availability of calcium carbonate ions. Changes in concentrations of the critical ions required for shell formation can result in malformation of shells. As pCO₂ concentrations in the atmosphere continue to increase, the oceans are becoming more acidified. This process, known as ocean acidification (OA), has demonstrated adverse effects on shell formation in calcifying organisms across taxa. Although OA is known to inhibit the shell deposition in mollusks, the impact of OA on the gene regulation of calcium deposition remains unknown. Here we show the responses of four calcium-binding protein genes, caltractin (cetn), calmodulin (calm), calreticulin (calr), and calnexin (canx), to CO₂-derived OA using a Crassostrea virginica mantle cell (CvMC) culture model and a larval C. virginica model. These four genes were cloned from C. virginica and the three-dimensional structures of the proteins encoded by these four genes were fully characterized using homolog modeling methods. Although an acidified environment by increased atmospheric pCO₂ (1,000 ppm) did not result in significant effects on CvMC proliferation and apoptosis, lower environmental pH induced upregulations of all four calcium-binding protein genes in CvMCs. Similarly, increased pCO₂ did not affect the growth of larval C. virginica in the early stages of development. However, elevated pCO₂ concentrations enhanced the expression of these calcium-binding protein genes at the protein level. The four calcium-binding protein genes demonstrated responsive expression profiles to an acidified environment at both cellular and individual levels. Further investigation of these genes may provide insight into the molecular regulation of mollusk biomineralization under OA stress.</p

Image_4_Production of Calcium-Binding Proteins in Crassostrea virginica in Response to Increased Environmental CO2 Concentration.PDF

<p>Biomineralization is a complexed process by organisms producing protective and supportive structures. Employed by mollusks, biomineralization enables creation of external shells for protection against environmental stressors. The shell deposition mechanism is initiated in the early stages of development and is dependent upon the concentration and availability of calcium carbonate ions. Changes in concentrations of the critical ions required for shell formation can result in malformation of shells. As pCO₂ concentrations in the atmosphere continue to increase, the oceans are becoming more acidified. This process, known as ocean acidification (OA), has demonstrated adverse effects on shell formation in calcifying organisms across taxa. Although OA is known to inhibit the shell deposition in mollusks, the impact of OA on the gene regulation of calcium deposition remains unknown. Here we show the responses of four calcium-binding protein genes, caltractin (cetn), calmodulin (calm), calreticulin (calr), and calnexin (canx), to CO₂-derived OA using a Crassostrea virginica mantle cell (CvMC) culture model and a larval C. virginica model. These four genes were cloned from C. virginica and the three-dimensional structures of the proteins encoded by these four genes were fully characterized using homolog modeling methods. Although an acidified environment by increased atmospheric pCO₂ (1,000 ppm) did not result in significant effects on CvMC proliferation and apoptosis, lower environmental pH induced upregulations of all four calcium-binding protein genes in CvMCs. Similarly, increased pCO₂ did not affect the growth of larval C. virginica in the early stages of development. However, elevated pCO₂ concentrations enhanced the expression of these calcium-binding protein genes at the protein level. The four calcium-binding protein genes demonstrated responsive expression profiles to an acidified environment at both cellular and individual levels. Further investigation of these genes may provide insight into the molecular regulation of mollusk biomineralization under OA stress.</p

Production of Calcium-Binding Proteins in Crassostrea virginica in Response to Increased Environmental CO2 Concentration

Biomineralization is a complexed process by organisms producing protective and supportive structures. Employed by mollusks, biomineralization enables creation of external shells for protection against environmental stressors. The shell deposition mechanism is initiated in the early stages of development and is dependent upon the concentration and availability of calcium carbonate ions. Changes in concentrations of the critical ions required for shell formation can result in malformation of shells. As pCO2 concentrations in the atmosphere continue to increase, the oceans are becoming more acidified. This process, known as ocean acidification (OA), has demonstrated adverse effects on shell formation in calcifying organisms across taxa. Although OA is known to inhibit the shell deposition in mollusks, the impact of OA on the gene regulation of calcium deposition remains unknown. Here we show the responses of four calcium-binding protein genes, caltractin (cetn), calmodulin (calm), calreticulin (calr), and calnexin (canx), to CO2-derived OA using a Crassostrea virginica mantle cell (CvMC) culture model and a larval C. virginica model. These four genes were cloned from C. virginica and the three-dimensional structures of the proteins encoded by these four genes were fully characterized using homolog modeling methods. Although an acidified environment by increased atmospheric pCO2 (1,000 ppm) did not result in significant effects on CvMC proliferation and apoptosis, lower environmental pH induced upregulations of all four calcium-binding protein genes in CvMCs. Similarly, increased pCO2 did not affect the growth of larval C. virginica in the early stages of development. However, elevated pCO2 concentrations enhanced the expression of these calcium-binding protein genes at the protein level. The four calcium-binding protein genes demonstrated responsive expression profiles to an acidified environment at both cellular and individual levels. Further investigation of these genes may provide insight into the molecular regulation of mollusk biomineralization under OA stress