Characterization of the casein gene complex in West Africa goats and description of a new αs1-casein polymorphism

The analysis of casein polymorphisms was carried out in West Africa goat populations: Red Sokoto (n = 57), West African Dwarf Nigeria (n = 27), West African Dwarf Cameroon (n = 39), and Borno (n = 37). The 4 casein genes alphas1 (CSN1S1), beta (CSN2), alphas2 (CSN1S2), and kappa (CSN3) were typed at the DNA level. No null alleles were found in any of the genes analyzed. A PCR single-strand conformation polymorphism method was implemented for the identification of CSN1S1*F allele simultaneously with A/01, B/E, N and the new allele. The allele differed from CSN1S1*B by a synonymous transversion TCG->TCT in the codon corresponding to Ser66 of the mature protein. The new allele, named CSN1S1*B', occurred at a high frequency in all the populations, ranging from 0.295 (West African Dwarf Cameroon) to 0.405 (Borno). A greater frequency was found for alleles associated with high alphas1-casein quantity, as has already been observed in the goat populations from the Mediterranean area. The intermediate E allele occurred only in the Red Sokoto and at a low frequency. The faint F allele occurred in 3 populations at frequencies lower than 0.03. Linkage disequilibrium occurred in all the populations, with highly significant differences in Borno, Red Sokoto, and West Africa Dwarf Nigeria, and significant differences in West Africa Dwarf Cameroon. Only 10 haplotypes showed frequencies >= 0.05 in at least 1 of the 4 populations considered, and the overall frequency was >0.1 only for 4 haplotypes: BAAB, B'ACA, ACAB, and BACA (in the order CSN1S1-CSN2-CSN1S2-CSN3). Haplotype BAAB, postulated as an ancestral haplotype in previous studies, was the most common haplotype in all breeds except Borno, where B'ACA was predominant. The results obtained are of considerable significance given that very little information exists on the subject for African goats. The high frequency of strong alleles in the calcium-sensitive caseins as well as the high linkage disequilibrium found among the casein genes in the African breeds analyzed may suggest that specific casein haplotypes have already been selected due to their advantages for nutrition. Haplotypes providing greater protein and casein content would increase the energy content of milk, thus resulting in more favorable growth and survival of young goats and humans consuming the milk

Building a high-quality sense inventory for improved abbreviation disambiguation

Motivation: The ultimate goal of abbreviation management is to disambiguate every occurrence of an abbreviation into its expanded form (concept or sense). To collect expanded forms for abbreviations, previous studies have recognized abbreviations and their expanded forms in parenthetical expressions of bio-medical texts. However, expanded forms extracted by abbreviation recognition are mixtures of concepts/senses and their term variations. Consequently, a list of expanded forms should be structured into a sense inventory, which provides possible concepts or senses for abbreviation disambiguation

Elastic scattering of low energy pions by nuclei and the in-medium isovector pi N amplitude

Measurements of elastic scattering of 21.5 MeV pi+ and pi- by Si, Ca, Ni and Zr were made using a single arm magnetic spectrometer. Absolute calibration was made by parallel measurements of Coulomb scattering of muons. Parameters of a pion-nucleus optical potential were obtained from fits to all eight angular distributions put together. The `anomalous' s-wave repulsion known from pionic atoms is clearly observed and could be removed by introducing a chiral-motivated density dependence of the isovector scattering amplitude, which also greatly improved the fits to the data. The empirical energy dependence of the isoscalar amplitude also improves the fits to the data but, contrary to what is found with pionic atoms, on its own is incapable of removing the anomaly.Comment: 20 pages, 5 figures, 5 tables. V2 added details on uncertainties,extended discussion. To appear in PR

Activation of brain interleukin-1β in schizophrenia

n/

Equatorial Pacific productivity changes near the Eocene-Oligocene boundary

There is general agreement that productivity in high latitudes increased in the late Eocene and remained high in the early Oligocene. Evidence for both increased and decreased productivity across the Eocene-Oligocene transition (EOT) in the tropics has been presented, usually based on only one paleoproductivity proxy and often in sites with incomplete recovery of the EOT itself. A complete record of the Eocene-Oligocene transition was obtained at three drill sites in the eastern equatorial Pacific Ocean (ODP Site 1218 and IODP Sites U1333 and U1334). Four paleoproductivity proxies that have been examined at these sites, together with carbon and oxygen isotope measurements on early Oligocene planktonic foraminifera, give evidence of ecologic and oceanographic change across this climatically important boundary. Export productivity dropped sharply in the basal Oligocene (~33.7�Ma) and only recovered several hundred thousand years later; however, overall paleoproductivity in the early Oligocene never reached the average levels found in the late Eocene and in more modern times. Changes in the isotopic gradients between deep- and shallow-living planktonic foraminifera suggest a gradual shoaling of the thermocline through the early Oligocene that, on average, affected accumulation rates of barite, benthic foraminifera, and opal, as well as diatom abundance near 33.5�Ma. An interval with abundant large diatoms beginning at 33.3�Ma suggests an intermediate thermocline depth, which was followed by further shoaling, a dominance of smaller diatoms, and an increase in average primary productivity as estimated from accumulation rates of benthic foraminifera

Corn Silage Yield and Quality, and Soil Health Metrics After Fall Cover Crop Grazing

Integrated crop-livestock systems can potentially produce more product per unit of land with minimal impacts on soil health and cash crop quality. In the Upper Midwest there is an opportunity to graze fall cover crops (CC) after winter wheat in a corn-wheat rotation. In East Lansing, Michigan, two CC treatments: 1) a pure brassica mixture (PURE), and 2) a complex mixture containing legumes, warm and cool season grasses, and brassicas (MIX) were planted after wheat, and grazed by lambs in the fall seasons of 2019 to 2021. The following year, soil health, corn yield and quality were measured from plots corresponding to a non-grazed control and plots grazed in October, November, and December. There was no significant effect on spring soil bulk density and penetration resistance (PR) regardless of CC mixture or the timing of grazing, although PR was numerically higher in the grazed plots. Corn crude protein, acid detergent fiber, and neutral detergent fiber were not different across graze date or CC treatments (P \u3e 0.05), although corn contained more starch when grown after MIX grazed in November (P=0.02). The difference in starch was possibly an artifact of spatial variability across the site. Corn dry matter yield was lower in the non-grazed control (15.35 Mg ha-1) when compared to the grazing treatments in October (17.37 Mg ha-1) and December (17.19 Mg ha-1) (P=0.03). Grazing cover crops in the fall may improve corn yield the following year without causing soil compaction or changing corn quality