Periodicity in wide-band time series

Summary: To test the hypotheses that (i) electroencephalograms (EEGs) are largely made up of oscillations at many frequencies and (ii) that the peaks in the power spectra represent oscillations, we applied a new method, called the Period Specific Average (PSA) to a wide sample of EEGs. Both hypotheses can be rejected

Fire interval and post-fire climate effects on serotinous forest resilience

Background Climate change is eroding forest resilience to disturbance directly through warming climate and indirectly through increasing disturbance activity. Forests characterized by stand-replacing fire regimes and dominated by serotinous species are at risk when the inter-fire period is insufficient for canopy seed bank development and climate conditions for recruitment in the post-fire growing season are unsuitable. Although both factors are critical to serotinous forest persistence, their relative importance for post-fire regeneration in serotinous forests remains poorly understood. To assess the relative effects of each factor, we established plots in severely burned knobcone pine (Pinus attenuata Lemmon) forests in Oregon and California, USA, representing a range of past fire intervals (6 to 31+ years). Specifically, we evaluated effects of fire interval and pre-fire canopy seed bank (proxies for seed supply) and post-fire climate on three metrics of post-fire tree regeneration (seedling density, probability of self-replacement, percent population recovery). Results Seed supply consistently had the strongest effect on post-fire regeneration. Between 6- and 31-year fire intervals, post-fire seedling density increased from 1000 to 100,000 seedlings ha−1, while probability of self-replacement increased from ~ 0 to ~ 100% and percent population recovery increased from 20 to 2000% of the pre-fire population, respectively. Similarly, increasing the canopy seed bank by two orders of magnitude increased seedling density and percent population recovery by two orders and one order of magnitude, respectively, and increased the probability of self-replacement by > 50%. Greater post-fire climatic moisture deficit exacerbated the effect of seed supply; an additional 4–6 years between fires was required under high moisture stress conditions to reach similar regeneration levels as under low moisture stress conditions. Conclusion The overriding effect of seed supply—strongly driven by pre-fire stand age—on post-fire regeneration suggests that altered fire frequency (an indirect effect of climate change) will have a profound impact on serotinous forests. Although direct effects of hot and dry climate are lower in magnitude, they can alter forest recovery where seed supply nears a threshold. These findings reveal how fire interval and climate combine to determine changes in forest cover in the future, informing management and vulnerability mapping

A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant staphylococcus aureus pandemic

The widespread use of antibiotics in association with high-density clinical care has driven the emergence of drug-resistant bacteria that are adapted to thrive in hospitalized patients. Of particular concern are globally disseminated methicillin-resistant Staphylococcus aureus (MRSA) clones that cause outbreaks and epidemics associated with health care. The most rapidly spreading and tenacious health-care-associated clone in Europe currently is EMRSA-15, which was first detected in the UK in the early 1990s and subsequently spread throughout Europe and beyond. Using phylogenomic methods to analyze the genome sequences for 193 S. aureus isolates, we were able to show that the current pandemic population of EMRSA-15 descends from a health-care-associated MRSA epidemic that spread throughout England in the 1980s, which had itself previously emerged from a primarily community-associated methicillin-sensitive population. The emergence of fluoroquinolone resistance in this EMRSA-15 subclone in the English Midlands during the mid-1980s appears to have played a key role in triggering pandemic spread, and occurred shortly after the first clinical trials of this drug. Genome-based coalescence analysis estimated that the population of this subclone over the last 20 yr has grown four times faster than its progenitor. Using comparative genomic analysis we identified the molecular genetic basis of 99.8% of the antimicrobial resistance phenotypes of the isolates, highlighting the potential of pathogen genome sequencing as a diagnostic tool. We document the genetic changes associated with adaptation to the hospital environment and with increasing drug resistance over time, and how MRSA evolution likely has been influenced by country-specific drug use regimens

Assessing phage therapy against Pseudomonas aeruginosa using a Galleria mellonella infection model

The Galleria mellonella infection model was used to assess the in vivo efficacy of phage therapy against laboratory and clinical strains of Pseudomonas aeruginosa. In a first series of experiments, Galleria were infected with the laboratory strain P. aeruginosa PAO1 and were treated with varying multiplicity of infection (MOI) of phages either 2 h post-infection (treatment) or 2 h pre-infection (prevention) via injection into the haemolymph. To address the kinetics of infection, larvae were bled over a period of 24 h for quantification of bacteria and phages. Survival rates at 24 h when infected with 10 cells/larvae were greater in the prevention versus treatment model (47% vs. 40%, MOI = 10; 47% vs. 20%, MOI = 1; and 33% vs. 7%, MOI = 0.1). This pattern held true when 100 cells/larvae were used (87% vs. 20%, MOI = 10; 53% vs. 13%, MOI = 1; 67% vs. 7%, MOI = 0.1). By 24 h post-infection, phages kept bacterial cell numbers in the haemolymph 1000-fold lower than in the non-treated group. In a second series of experiments using clinical strains to further validate the prevention model, phages protected Galleria when infected with both a bacteraemia (0% vs. 85%) and a cystic fibrosis (80% vs. 100%) isolate. Therefore, this study validates the use of G. mellonella as a simple, robust and cost-effective model for initial in vivo examination of P. aeruginosa-targeted phage therapy, which may be applied to other pathogens with similarly low infective doses

Global analysis of community-associated methicillin-resistant Staphylococcus aureus exoproteins reveals molecules produced in vitro and during infection

Community-associated methicillin-resistant Staphylococcus aureus (CA-MRSA) is a threat to human health worldwide. Although progress has been made, mechanisms of CA-MRSA pathogenesis are poorly understood and a comprehensive analysis of CA-MRSA exoproteins has not been conducted. To address that deficiency, we used proteomics to identify exoproteins made by MW2 (USA400) and LAC (USA300) during growth in vitro. Two hundred and fifty unique exoproteins were identified by 2-dimensional gel electrophoresis coupled with automated direct infusion-tandem mass spectrometry (ADI-MS/MS) analysis. Eleven known virulence-related exoproteins differed in abundance between the strains, including alpha-haemolysin (Hla), collagen adhesin (Cna), staphylokinase (Sak), coagulase (Coa), lipase (Lip), enterotoxin C3 (Sec3), enterotoxin Q (Seq), V8 protease (SspA) and cysteine protease (SspB). Mice infected with MW2 or LAC produced antibodies specific for known or putative virulence factors, such as autolysin (Atl), Cna, Ear, ferritin (Ftn), Lip, 1-phosphatidylinositol phosphodiesterase (Plc), Sak, Sec3 and SspB, indicating the exoproteins are made during infection in vivo. We used confocal microscopy to demonstrate aureolysin (Aur), Hla, SspA and SspB are produced following phagocytosis by human neutrophils, thereby linking exoprotein production in vitro with that during host–pathogen interaction. We conclude that the exoproteins identified herein likely account in part for the success of CA-MRSA as a human pathogen

Molecular characterization of Moraxella liscatarrhalis

SIGLEAvailable from British Library Document Supply Centre- DSC:DX185027 / BLDSC - British Library Document Supply CentreGBUnited Kingdo

Demographic processes underpinning post-fire resilience in California closed-cone pine forests: The importance of fire interval, stand structure, and climate

The resilience of serotinous obligate-seeding plants to fire may be compromised if increasing fire frequency curtails time available for canopy seed bank accumulation (i.e., immaturity risk), but how various drivers affect seed availability at the time of fire is poorly understood. Using field data from California closed-cone pine (Pinus attenuata and P. muricata) stands, we assess two critical demographic processes during the inter-fire period—reproductive capacity and mortality. At tree- and stand-levels, we test how these processes are affected by stand age and are mediated by biotic and abiotic factors. We found that stand age was the key driver of reproductive capacity; older stands had a greater proportion of reproductively mature individuals and greater closed cone density. Stand density mediated the effect of age; greater stand density resulted in greater closed cone density and a lower proportion of reproductively mature individuals, but reproductive capacity in low- and high-density stands converged over time. Increased moisture stress reduced the stand-level proportion reproductively mature trees but had no effect on closed cone density. Mortality was strongly associated with density-dependent thinning and increased in stands with high moisture stress. Reproductive capacity began to increase sharply 10 years post-fire and by 20 years immaturity risk was low. However, prior to 20 years, low-density stands with high moisture stress may be more susceptible to immaturity risk. Understanding these relationships is critical to predicting serotinous population persistence under changing climate and disturbance conditions