High Occupancy of Stream Salamanders Despite High Ranavirus Prevalence in a Southern Appalachians Watershed

Abstract: The interactive effects of environmental stressors and emerging infectious disease pose potential threats to stream salamander communities and their headwater stream ecosystems. To begin assessing these threats, we conducted occupancy surveys and pathogen screening of stream salamanders (Family Plethodontidae) in a protected southern Appalachians watershed in Georgia and North Carolina, USA. Of the 101 salamanders screened for both chytrid fungus (Batrachochytrium dendrobatidis) and Ranavirus, only two exhibited low-level chytrid infections. Prevalence of Ranavirus was much higher (30.4% among five species of Desmognathus). Despite the ubiquity of ranaviral infections, we found high probabilities of site occupancy (!0.60) for all stream salamander species

An Estimate of Avian Mortality at Communication Towers in the United States and Canada

Avian mortality at communication towers in the continental United States and Canada is an issue of pressing conservation concern. Previous estimates of this mortality have been based on limited data and have not included Canada. We compiled a database of communication towers in the continental United States and Canada and estimated avian mortality by tower with a regression relating avian mortality to tower height. This equation was derived from 38 tower studies for which mortality data were available and corrected for sampling effort, search efficiency, and scavenging where appropriate. Although most studies document mortality at guyed towers with steady-burning lights, we accounted for lower mortality at towers without guy wires or steady-burning lights by adjusting estimates based on published studies. The resulting estimate of mortality at towers is 6.8 million birds per year in the United States and Canada. Bootstrapped subsampling indicated that the regression was robust to the choice of studies included and a comparison of multiple regression models showed that incorporating sampling, scavenging, and search efficiency adjustments improved model fit. Estimating total avian mortality is only a first step in developing an assessment of the biological significance of mortality at communication towers for individual species or groups of species. Nevertheless, our estimate can be used to evaluate this source of mortality, develop subsequent per-species mortality estimates, and motivate policy action

Robust estimation of bacterial cell count from optical density

Optical density (OD) is widely used to estimate the density of cells in liquid culture, but cannot be compared between instruments without a standardized calibration protocol and is challenging to relate to actual cell count. We address this with an interlaboratory study comparing three simple, low-cost, and highly accessible OD calibration protocols across 244 laboratories, applied to eight strains of constitutive GFP-expressing E. coli. Based on our results, we recommend calibrating OD to estimated cell count using serial dilution of silica microspheres, which produces highly precise calibration (95.5% of residuals <1.2-fold), is easily assessed for quality control, also assesses instrument effective linear range, and can be combined with fluorescence calibration to obtain units of Molecules of Equivalent Fluorescein (MEFL) per cell, allowing direct comparison and data fusion with flow cytometry measurements: in our study, fluorescence per cell measurements showed only a 1.07-fold mean difference between plate reader and flow cytometry data

Avian mortality at communication towers in the United States and Canada: which species, how many, and where?

Birds migrating to and from breeding grounds in the United States and Canada are killed by the millions in collisions with lighted towers and their guy wires. Avian mortality at towers is highly variable across species, and the importance to each population depends on its size and trajectory. Building on our previous estimate of avian mortality at communication towers, we calculated mortality by species and by regions. To do this, we constructed a database of mortality by species at towers from available records and calculated the mean proportion of each species killed at towers within aggregated Bird Conservation Regions. These proportions were combined with mortality estimates that we previously calculated for those regions. We then compared our estimated bird mortality rates to the estimated populations of these species in the United States and Canada. Neotropical migrants suffer the greatest mortality; 97.4% of birds killed are passerines, mostly warblers (Parulidae, 58.4%), vireos (Vireonidae, 13.4%), thrushes (Turdidae, 7.7%), and sparrows (Emberizidae, 5.8%). Thirteen birds of conservation concern in the United States or Canada suffer annual mortality of 1–9% of their estimated total population. Of these, estimated annual mortality is \u3e2% for Yellow Rail (Coturnicops noveboracensis), Swainson’s Warbler (Limnothlypis swainsonii), Pied-billed Grebe (Podilymbus podiceps), Bay-breasted Warbler (Setophaga castanea), Golden-winged Warbler (Vermivora chrysoptera), Worm-eating Warbler (Helmitheros vermivorum), Prairie Warbler (Setophaga discolor), and Ovenbird (Seiurus aurocapilla). Avian mortality from anthropogenic sources is almost always reported in the aggregate (‘‘number of birds killed’’), which cannot detect the species-level effects necessary to make conservation assessments. Our approach to per species estimates could be undertaken for other sources of chronic anthropogenic mortality

An Estimate of Avian Mortality at Communication Towers in the United States and Canada

Avian mortality at communication towers in the continental United States and Canada is an issue of pressing conservation concern. Previous estimates of this mortality have been based on limited data and have not included Canada. We compiled a database of communication towers in the continental United States and Canada and estimated avian mortality by tower with a regression relating avian mortality to tower height. This equation was derived from 38 tower studies for which mortality data were available and corrected for sampling effort, search efficiency, and scavenging where appropriate. Although most studies document mortality at guyed towers with steady-burning lights, we accounted for lower mortality at towers without guy wires or steady-burning lights by adjusting estimates based on published studies. The resulting estimate of mortality at towers is 6.8 million birds per year in the United States and Canada. Bootstrapped subsampling indicated that the regression was robust to the choice of studies included and a comparison of multiple regression models showed that incorporating sampling, scavenging, and search efficiency adjustments improved model fit. Estimating total avian mortality is only a first step in developing an assessment of the biological significance of mortality at communication towers for individual species or groups of species. Nevertheless, our estimate can be used to evaluate this source of mortality, develop subsequent per-species mortality estimates, and motivate policy action

Number of communication towers ≥60 m by type and associated avian mortality estimates for Canada and the continental United States.

1<p>Tower attributes (guy wires, lighting type) for Canada are extrapolated from proportions in the United States because these attributes are not found in the NAV CANADA database.</p

Map of communication towers in the United States and Canada by height class.

<p>Data acquired from Federal Communications Commission, Towermaps.com, and NAV CANADA.</p

Relationship of bird fatalities to free airspace at WCTV Tower, 1956–1967.

<p>Raw data from Crawford and Engstrom (2001) were used to plot daily bird fatalities against the mean free airspace between the top of the tower and the cloud ceiling each day. Days with maximum ceiling were excluded. Daily avian mortality increases significantly as free airspace decreases (Ln(Bird Fatalities +1) = 1.443928 – 0.0016667 · Mean Free Airspace (m), <i>R</i>² = 0.17, p<0.001).</p