script_chloro

UNIX script used for plastid reconstruction. The following tools must be installed: VELVET, PLAST, COPE, OBITOOL

alignments

Plastid DNA, mitochondrial DNA and nuclear ribosomic regions alignments, including the complete sequences or the non-intronic transcribed sequences only. Alignments were performed using MAFFT and cleaned using Gblocks. Files are in fasta format

trees

Trees obtained with plastid DNA, mitochondrial DNA and nuclear ribosomic regions alignments, including the complete sequences or the non-intronic transcribed sequences only, using RAxML and MrBayes. Files are in NEXUS format

Representation

REPRESENTATION The thesis is focused on the institute of representation in general. It provides an explanation of basic attributes of representation and it's resolution methods. Given the scope of the thesis it was not possible to cover discourse about all forms of representation and therefore it is mainly focused on direct representation in substantive law. The work is based on current regulation contained in Law No. 89/2012 Coll., The Civil Code and it highlights the most significant changes which has occurred since the date of effectiveness of this Code in regulation of representation. It also refers to consequences of these changes and contentious issues which arise with the application of individual provisions. This work deals with contractual and statutory representation including representation of an entrepreneur and representation of legal entities, briefly describes representation in family law. There is also an elaborated issue of guardianship that has been affected by significant changes. It refers to guardian council and guardianship of legal entities that are newly adjusted in Czech legal order. There is also included characterization of preliminary declaration, supported decision making, representation by the member of the household

SNPs validated with different MAC (2 or 3) and a sequencing depth of 10 or 20X

This archive contains three types of files with extensions '.n', '.y' and '.alleles'. '.n' files list for each library the number of reads associated at each SNP position. '.y' files list the number of times a SNP is detected. '.alleles' files give the name of the contig displaying a given SNP, then the position of the SNP from the restriction site, the total number of reads for the whole dataset, the count of the minor allele, the count of the major allele, and the two possible nucleotides encountered at this positio

Additional file 2: Figure S1. of SNP discovery and genetic mapping using genotyping by sequencing of whole genome genomic DNA from a pea RIL population

Frequency histograms of SNP coverage. (A) corresponds to 419,024 SNPs identified by discoSnp on four pea lines, (B) to 213,030 SNPs selected after post discoSnp filtering on four pea lines, (C) to a selection of 88,851 polymorphic SNPs on 48 pea RILs, (D) to a selection of 88,851 polymorphic SNPs on eight pea lines. (PDF 267 kb

Fasta file listing contigs

Fasta file listing contig

Faeces and plant sampling schemes.

<p>Faeces and plant sampling schemes.</p

Taxonomic resolution of the golden-crowned sifaka diet.

<p>Panel (a) presents the results base on the EMBL reference database only. Panel (b) presents the results using both EMBL and customized local reference database. Panel (c) uses the final results integrating the final validation by taxonomic experts. The proportions correspond to the number of sequences assigned to each taxonomic rank compared to the total number of identified sequences from DNA Barcoding (N = 130).</p

Plant richness rarefaction curve.

<p>The solid line represents the cumulated number of MOTUs (a) and food plant genera (b) as a function of the number of sampled individuals. The dashed lines are the 95% confidence intervals.</p