Integration of radiometric ground-based data and high-resolution quickbird imagery with multivariate modeling to estimate maize traits in the nile delta of Egypt

In site-specific management, rapid and accurate identification of crop stress at a large scale is critical. Radiometric ground-based data and satellite imaging with advanced spatial and spectral resolution allow for a deeper understanding of crop stress and the level of stress in a given area. This research aimed to assess the potential of radiometric ground-based data and high-resolution QuickBird satellite imagery to determine the leaf area index (LAI), biomass fresh weight (BFW) and chlorophyll meter (Chlm) of maize across well-irrigated, water stress and salinity stress areas in the Nile Delta of Egypt. Partial least squares regression (PLSR) and multiple linear regression (MLR) were evaluated to estimate the three measured traits based on vegetation spectral indices (vegetation-SRIs) derived from these methods and their combination. Maize field visits were conducted during the summer seasons from 28 to 30 July 2007 to collect ground reference data concurrent with the acquisition of radiometric ground-based measurements and QuickBird satellite imagery. The results showed that the majority of vegetation-SRIs extracted from radiometric ground-based data and high-resolution satellite images were more effective in estimating LAI, BFW, and Chlm. In general, the vegetation-SRIs of radiometric ground-based data showed higher R2 with measured traits compared to the vegetation-SRIs extracted from high-resolution satellite imagery. The coefficient of determination (R2) of the significant relationships between vegetation-SRIs of both methods and three measured traits varied from 0.64 to 0.89. For example, with QuickBird high-resolution satellite images, the relationships of the green normalized difference vegetation index (GNDVI) with LAI and BFW showed the highest R2 of 0.80 and 0.84, respectively. Overall, the ground-based vegetation-SRIs and the satellite-based indices were found to be in good agreement to assess the measured traits of maize. Both the calibration (Cal.) and validation (Val.) models of PLSR and MLR showed the highest performance in predicting the three measured traits based on the combination of vegetation-SRIs from radiometric ground-based data and high-resolution QuickBird satellite imagery. For example, validation (Val.) models of PLSR and MLR showed the highest performance in predicting the measured traits based on the combination of vegetation-SRIs from radiometric ground-based data and high-resolution QuickBird satellite imagery with R2 (0.91) of both methods for LAI, R2 (0.91–0.93) for BFW respectively, and R2 (0.82) of both methods for Chlm. The models of PLSR and MLR showed approximately the same performance in predicting the three measured traits and no clear difference was found between them and their combinations. In conclusion, the results obtained from this study showed that radiometric ground-based measurements and high spectral resolution remote-sensing imagery have the potential to offer necessary crop monitoring information across well-irrigated, water stress and salinity stress in regions suffering lack of freshwater resources

Assessing the Efficiency of Remote Sensing and Machine Learning Algorithms to Quantify Wheat Characteristics in the Nile Delta Region of Egypt

Monitoring strategic agricultural crops in terms of crop growth performance, by accurate cost-effective and quick tools is crucially important in site-specific management to avoid crop reductions. The availability of commercial high resolution satellite images with high resolution (spatial and spectral) as well as in situ spectra measurements can help decision takers to have deep insight on crop stress in a certain region. The research attempts to examine remote sensing dataset for forecasting wheat crop (Sakha 61) characteristics including the leaf area index (LAI), plant height (plant-h), above ground biomass (AGB) and Soil Plant Analysis Development (SPAD) value of wheat across non-stress, drought and salinity-induced stress in the Nile Delta region. In this context, the ability of in situ spectroradiometry measurements and QuickBird high resolution images was evaluated in our research. The efficiency of Random Forest (RF) and Artificial Neural Network (ANN), mathematical models was assessed to estimate the four measured wheat characteristics based on vegetation spectral reflectance indices (V-SRIs) extracted from both approaches and their interactions. Field surveys were carried out to collect in situ spectroradiometry measurements concomitant with the acquisition of QuickBird imagery. The results demonstrated that several V-SRIs extracted from in situ spectroradiometry data and the QuickBird image correlated with the LAI, plant-h, AGB, and SPAD value of wheat crop across the study site. The determination coefficient (R2) values of the association between V-SRIs of in situ spectroradiometry data and various determined wheat characteristics varied from 0.26 to 0.85. The ANN-GSIs-3 was found to be the optimum predictive model, demonstrating a greater relationship between the advanced features and LAI. The three features of V-SRIs comprised in this model were strongly significant for the prediction of LAI. The attained results indicated high R2 values of 0.94 and 0.86 for the training and validation phases. The ANN-GSIs-3 model constructed for the determination of chlorophyll in the plant which had higher performance expectations (R2 = 0.96 and 0.92 for training and validation datasets, respectively). In conclusion, the results of our study revealed that high resolution remote sensing images such as QuickBird or similar imagery, and in situ spectroradiometry measurements have the feasibility of providing necessary crop monitoring data across non-stressed and stressed (drought and salinity) conditions when integrating V-SRIs with ANN and RF algorithms

Genetic variations of estrogen receptor (ESR) associated with hepatitis C virus-induced hepatocellular carcinoma: Scientific ramifications

Hepatocellular carcinoma (HCC) is the fifth most common malignancy worldwide and a major public health concern in Egypt. HCC is a tough condition to cure, and genetic diversity has been linked to the disease's progression. HCC is a complicated condition in which 95% of patients have chronic liver disorders, the majority of which are caused by viruses. One of the causes of HCC is the hepatitis C virus (HCV). Sex hormones, such as estrogen, have an effect on the liver. Although estrogen (ER) is known to play a function in a range of biological processes, its role in the development of HCC is controversial, with evidence pointing to both a carcinogenic and a preventative effect on the liver. Estrogen receptor (ESR) was shown to be strongly expressed in HCV-infected people. This study reveals that ESR and its variants play a role in hepatocarcinogenesis development. Some single nucleotide polymorphisms (SNPs) may have a functional influence on the end product of a gene, which may be assessed, and may play a role in pathogenic alterations

Designing, Optimizing, and Validating a Low-Cost, Multi-Purpose, Automatic System-Based RGB Color Sensor for Sorting Fruits

The use of automatic systems in the agriculture sector enhances product quality and the country’s economy. The method used to sort fruits and vegetables has a remarkable impact on the export market and quality assessment. Although manual sorting and grading can be performed easily, it is inconsistent, time-consuming, expensive, and highly influenced by the surrounding environment. In this regard, this study aimed to design and optimize the performance of a low-cost, multi-purpose, automatic RGB color-based sensor for sorting fruits. The proposed automatic color sorting system consists of hardware components including a machine frame, belt and pulleys, conveyor belt, scanning zone, plastic boxes, electric components (stepper motors, RGB color sensors, Arduino Mega, motor drivers), and software components (Arduino IDE version 2.2.1 and C++). Calibration was performed for the light intensity sensor to measure the light intensity inside the scanning zone, the conveyor speed sensor, and the RGB color sensors by testing the RGB color channels. The sensor, the height, conveyor belt color, and light intensity should be carefully adjusted to ensure a high performance of the color-based sorting system. The results showed that the appropriate sensor height ranged from 15 to 30 mm, the optimum color of the conveyor belt was black, and scanning the objects at a light intensity of 25 lux achieved the best output signals. The RGB color sensors achieved an analytical performance similar to that obtained with manual sorting without requiring the use of computers for image processing like other automatic sorting systems do in order to gather RGB data

Optimizing the In-Vessel Composting Process of Sugarbeet Dry-Cleaning Residue

Rapid urbanization and industrialization around the world have created massive amounts of organic residues, which have been prioritized for conversion into valuable resources through the composting process to keep their harmful effect at a minimum. This research aimed to assess the influence of active and passive aeration on composting mass of sugar beet residues in the case of using additives (e.g., charcoal only or manure only or combination). Some physicochemical properties of composting mass were analyzed on certain days of composting. Some parameters including temperature–time profile, carbon to nitrogen ratio (C/N ratio), moisture content, electrical conductivity, pH, germination and microbial population enumeration of compost were measured. Cress germination test was conducted for each medium of germination which contains a mixture of soil and compost (at a ratio of 3:1) taken from each treatment. The results showed that temperature–time profile data of composting mass showed an irregularity. Forcedly aerated composting mass did not demonstrate a thermophilic phase while passively aerated ones did not show a mesophilic phase. Carbon to nitrogen (C/N) ratio reduction was greater in most forcedly aerated composting mass than passively aerated on days from 1 to 33 of composting period. The results further showed that electrical conductivity decreased at the end of the composting period where it ranged from 2.55 to 3.1 dS/m. Germination medium containing forcedly aerated compost treated with a combination of charcoal and manure achieved the highest germination index which was higher than the control sample by 58.63% followed by forcedly aerated composting mass treated by charcoal only which exceeded the control sample by 5.35%. Strong correlation coefficient (r > 0.80) for the relationship between germination index and number of bacteria was obtained on day 17th of composting period

Modifying Walk-In Tunnels through Solar Energy, Fogging, and Evaporative Cooling to Mitigate Heat Stress on Tomato

Global warming is by far the most significant issue caused by climate change. Over the past few decades, heat stress has intensified into a serious issue that has a negative impact on crop production. Hence, it is crucial to modify cultivation systems to cope with this kind of stress, particularly in arid dry regions. In comparison to open-field cultivation, tomato production under protected cultivation techniques in walk-in tunnels that are suited for different farmers’ financial abilities was evaluated during the late summer season. The studied tunnels included a shaded net tunnel with natural ventilation, net tunnel with a fogging system and plastic tunnel with evaporative cooling (wet pad and fans). For the operation of fogging and evaporative cooling systems, solar energy was used as a sustainable, eco-friendly energy source. The results indicated that the solar energy system successfully operated the studied cooling systems. All studied protective cultivation techniques mitigated heat stress on tomato plant and improved the microclimate under walk-in tunnels. Moreover, evaporative cooling and fogging systems significantly increased plant leaf area, cell membrane efficiency and the contents of chlorophyll, relative water and proline compared to the net tunnel with natural ventilation. Furthermore, a marked reduction in physiological disorders was noticed. Improved physiological and biochemical parameters and limited physiological diseases led to higher fruit set, marketable fruit yield and total productivity. The percentage of marketable fruit yield increased by around 31.5% with an evaporative cooling system, 28.8% with a fogging system and 17% with a shaded net tunnel with no positive cooling as compared to an open field. However, the plants grown in open-field cultivation without protection significantly deteriorated from heat stress and had a high incidence of physiological disorders. The most incident physiological disorders were blossom-end rot, cracking, internal white tissues, sunscald, puffiness, blotchy ripening, cat face and exserted stigma. It is recommended to use a solar energy system to modify microclimate conditions through fogging or evaporative cooling under walk-in tunnels to ameliorate heat stress on grown tomato in the late summer season for higher fruit yield and fewer physiological disorders

Using Optimized Three-Band Spectral Indices and a Machine Learning Model to Assess Squash Characteristics under Moisture and Potassium Deficiency Stress

Moisture and potassium deficiency are two of the main limiting variables for squash crop performance in many water-stressed places worldwide. If major output decreases are to be avoided, it is critical to detect signs of crop stress as early as possible in the growth cycle. Proximal remote sensing can be a reliable technique for offering a rapid and precise instrument and localized management tool. This study tested the ability of proximal hyperspectral remotely sensed data to predict squash traits in two successive seasons (spring and fall) with varying moisture and potassium rates. Spectral data were collected from drip-irrigated squash that had been treated to varied rates of irrigation and potassium fertilization over both investigated seasons. To forecast potassium-use efficiency (KUE), chlorophyll meter (Chlm), water-use efficiency (WUE), and seed yield (SY) of squash, different commonly used and newly-introduced spectral index values for three bands (3D-SRIs), as well as a Decision Tree (DT) model, were evaluated. The results revealed that the newly constructed three-band SRIs based on the wavelengths of the visible (VIS), near-infrared (NIR), and red-edge regions were sensitive enough to measure the four tested parameters of squash in this study. For instance, NDI558,646,708 presented the highest R2 of 0.75 for KUE, NDI744,746,738 presented the highest R2 of 0.65 for Chlm, and NDI670,628,392 presented the highest R2 of 0.64 for SY of squash. The results further demonstrated that the principal component analysis (PCA) demonstrated the ability to distinguish moisture stress from potassium deficiency stress at the flowering stage onwards. Combining 3D-SRIs, DT-based bands (DT-b), and the aggregate of all spectral characteristics (ASF) with DT models would be an effective strategy for estimating four observed parameters with appropriate accuracy. For example, the model’s approximately 30 spectral characteristics were extremely important for predicting KUE. Its outputs with R2 were, for the training and validation datasets, 0.967 (RMSE = 0.175) and 0.818 (RMSE = 0.284), respectively. For measuring Chlm, the DT-DT-b-20 model demonstrated the best. In the training and validation datasets, the R2 value was 0.993 (RMSE = 0.522) and 0.692 (RMSE = 2.321), respectively. The overall outcomes showed that proximal-reflectance-sensing-based 3D-SRIs and DT models based on 3D-SRIs, DT-b, and ASF could be used to evaluate the four tested parameters of squash under different levels of irrigation regimes and potassium fertilizer

Environmental Assessment of Potentially Toxic Elements Using Pollution Indices and Data-Driven Modeling in Surface Sediment of the Littoral Shelf of the Mediterranean Sea Coast and Gamasa Estuary, Egypt

Coastal environmental assessment techniques have evolved into one of the most important fields for the long-term development and management of coastal zones. So, the overall aim of the present investigation was to provide effective approaches for making informed decisions about the Gamasa coast sediment quality. Over a two-year investigation, sediment samples were meticulously collected from the Gamasa estuary and littoral shelf. The inductively coupled plasma mass spectra (ICP-MS) was used to the total concentrations of Al, Fe, Ti, Mg, Mn, Cu, P, V, Ba, Cr, Sr, Co, Ni, Zn, Pb, Zr, and Ce. Single elements environmental pollution indices including the geoaccumulation index (Igeo), contamination factor (CF), and enrichment factor (EF), as well as multi-elements pollution indices comprising the potential ecological risk index (RI), degree of contamination (Dc), and pollution load index (PLI) were used to assess the sediment and the various geo-environmental variables affecting the Mediterranean coastal system. Furthermore, the Dc, PLI, and RI were estimated using the random forest (RF) and Back-Propagation Neural Network (BPNN) depending on the selected elements. According to the Dc results, all the investigated sediment samples categories were considerably contaminated. Cr, Co, Ni, Cu, Zr, V, Zn, P, and Mn showed remarkable enrichment in sediment samples and were originated from anthropogenic sources based on the CF, EF, and Igeo data. Moreover, the RI findings revealed that all the samples tested pose a low ecologically risk. Meanwhile, based on PLI, 70% of the Gamasa estuary samples were polluted, while 93.75% of littoral shelf sediment was unpolluted. The BPNNs -PCs-CD-17 model performed the best and demonstrated a better association between exceptional qualities and CD. With R2 values of 1.00 for calibration (Cal.) and 1.00 for validation (Val.). The BPNNs -PCs-PLI-17 models performed the best in terms of measuring PLI with respective R2 values of 1.00 and 0.98 for the Cal. and Val. datasets. The findings showed that the RF and BPNN models may be used to precisely quantify the pollution indices (Dc, PLI, and RI) in calibration (Cal.) and validation (Val.) datasets utilizing potentially toxic elements of surface sediment

Utilization of Pollution Indices, Hyperspectral Reflectance Indices, and Data-Driven Multivariate Modelling to Assess the Bottom Sediment Quality of Lake Qaroun, Egypt

Assessing the environmental hazard of potentially toxic elements in bottom sediments has always been based entirely on ground samples and laboratory tests. This approach is remarkably accurate, but it is slow, expensive, damaging, and spatially constrained, making it unsuitable for monitoring these parameters effectively. The main goal of the present study was to assess the quality of sediment samples collected from Lake Qaroun by using different groups of spectral reflectance indices (SRIs), integrating data-driven (Artificial Neural Networks; ANN) and multivariate analysis such as multiple linear regression (MLR) and partial least square regression (PLSR). Jetty cruises were carried out to collect sediment samples at 22 distinct sites over the entire Lake Qaroun, and subsequently 21 metals were analysed. Potential ecological risk index (RI), organic matter (OM), and pollution load index (PLI) of lake’s bottom sediments were subjected to evaluation. The results demonstrated that PLI showed that roughly 59% of lake sediments are polluted (PLI > 1), especially samples of eastern and southern sides of the lake’s central section, while 41% were unpolluted (PLI < 1), which composed samples of the western and western northern regions. The RI’s findings were that all the examined sediments pose a very high ecological risk (RI > 600). It is obvious that the three band spectral indices are more efficient in quantifying different investigated parameters. The results showed the efficiency of the three tested models to predict OM, PLI, and RI, revealing that the ANN is the best model to predict these parameters. For instance, the determination coefficient values of the ANN model of calibration datasets for predicting OM, PLI, and RI were 0.999, 0.999, and 0.999, while they were 0.960, 0.897, and 0.853, respectively, for the validation dataset. The validation dataset of the PLSR produced R2 values higher than with MLR for predicting PLI and RI. Finally, the study’s main conclusion is that combining ANN, PLSR, and MLR with proximal remote sensing could be a very effective tool for the detection of OM and pollution indices. Based on our findings, we suggest the created models are easy tools for forecasting these measured parameters