17 research outputs found

    Substantial conformational change mediated by charge-triad residues of the death effector domain in protein-protein interactions.

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    Protein conformational changes are commonly associated with the formation of protein complexes. The non-catalytic death effector domains (DEDs) mediate protein-protein interactions in a variety of cellular processes, including apoptosis, proliferation and migration, and glucose metabolism. Here, using NMR residual dipolar coupling (RDC) data, we report a conformational change in the DED of the phosphoprotein enriched in astrocytes, 15 kDa (PEA-15) protein in the complex with a mitogen-activated protein (MAP) kinase, extracellular regulated kinase 2 (ERK2), which is essential in regulating ERK2 cellular distribution and function in cell proliferation and migration. The most significant conformational change in PEA-15 happens at helices α2, α3, and α4, which also possess the highest flexibility among the six-helix bundle of the DED. This crucial conformational change is modulated by the D/E-RxDL charge-triad motif, one of the prominent structural features of DEDs, together with a number of other electrostatic and hydrogen bonding interactions on the protein surface. Charge-triad motif promotes the optimal orientation of key residues and expands the binding interface to accommodate protein-protein interactions. However, the charge-triad residues are not directly involved in the binding interface between PEA-15 and ERK2

    Single-cell phenotypic characterization of Staphylococcus aureus with fluorescent triazole urea activity-based probes.

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    Phenotypically distinct cellular (sub)populations are clinically relevant for virulence and antibiotic resistance of a bacterial pathogen, but functionally different cells are usually indistinguishable from each other. Here, we introduce fluorescent activity-based probes as chemical tools for single-cell phenotypic characterization of enzyme activity levels in Staphylococcus aureus. We screened a 1,2,3-triazole urea library to identify selective inhibitors of fluorophosphonate-binding serine hydrolases and lipases in S. aureus and synthesized target-selective activity-based probes. Molecular imaging and activity-based protein profiling studies with these probes revealed a dynamic network within this enzyme family involving compensatory regulation of specific family members and exposed single-cell phenotypic heterogeneity. We propose chemical probe labeling of enzymatic activities as a generalizable method for phenotyping of bacterial cells at the population and single-cell level

    The partial-thickness rotator cuff tear: is acromioplasty without repair sufficient ?

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    Contains fulltext : mmubn000001_02748713x.pdf (publisher's version ) (Open Access)Promotor : A. Manning cum laudeXVI, 329 p

    Electrostatic and hydrogen bonding interactions between charged and polar amino acid side chains.

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    <p>(A) PEA-15 DED in the free form (PDB ID 2LS7). (B) L-arginine (CSD Refcode TAQBIY). (C) Full-length PEA-15 complexed with T185E ERK2 (PDB ID 4IZ5). (D) PEA-15 DED complexed with unphosphorylated ERK2 (PDB ID 4IZ7). (E) PEA-15 DED complexed with dual phosphorylated ERK2 (PDB ID 4IZA). (F) MC159 protein DED1 (PDB ID 2BBR). (G) MC159 protein DED2 (PDB ID 2BBR). The six helices, α1–α6, are labeled on each DED structure, with residues forming hydrogen bonds represented as a stick model (cyan color with pink labels), and heavy atom distances (in Å) shown between the two residues. Residues from ERK2 (C–E) are colored in orange with green labels.</p

    Comparison of experimentally-measured and predicted residual dipolar couplings (RDCs) of PEA-15 death effector domain (DED, residues 1–90).

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    <p>Experimental RDCs (red) were measured for the PEA-15 in the free (A, B) and ERK2-bound (C–F) forms in two alignment media: filamentous bacteriophage pf1 (A, C, E) and non-ionic C<sub>12</sub>E<sub>5</sub>/<i>n</i>-hexanol (B, D, F). Predicted RDCs (blue) were calculated from (A–D) the NMR model structure of free PEA-15 (2LS7) or (E, F) the ERK2-bound form of PEA-15 (4IZ7). The positions of the alpha-helices are indicated by pink bars. The free-form PEA-15 displays excellent agreement between the experimental and predicted RDC values throughout the DED sequence, while the ERK2-bound PEA-15 RDCs only reasonably agree in helices α1, α5, and α6 for both 2LS7 and 4IZ7, indicating a significant reorientation of helices α2, α3, and α4 in the PEA-15/ERK2 complex.</p

    Distribution of distances between nitrogen and oxygen atoms involved in N-H…O hydrogen bonds in small molecule structures containing intermolecular carboxylate-guanidine-carboxylate (charge-triad mimic) motifs surveyed in the Cambridge Structural Database (CSD).

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    <p>A total of 109 structures that possess the charge-triad mimics were extracted from the CSD and hydrogen bonding patterns analyzed to generate the histogram. Only intermolecular hydrogen bonds formed between COO<sup>−</sup>…H-N<sup>+</sup>-H…<sup>−</sup>OOC were counted in the histogram.</p
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