Dynamics of dark energy

In this paper we review in detail a number of approaches that have been adopted to try and explain the remarkable observation of our accelerating Universe. In particular we discuss the arguments for and recent progress made towards understanding the nature of dark energy. We review the observational evidence for the current accelerated expansion of the universe and present a number of dark energy models in addition to the conventional cosmological constant, paying particular attention to scalar field models such as quintessence, K-essence, tachyon, phantom and dilatonic models. The importance of cosmological scaling solutions is emphasized when studying the dynamical system of scalar fields including coupled dark energy. We study the evolution of cosmological perturbations allowing us to confront them with the observation of the Cosmic Microwave Background and Large Scale Structure and demonstrate how it is possible in principle to reconstruct the equation of state of dark energy by also using Supernovae Ia observational data. We also discuss in detail the nature of tracking solutions in cosmology, particle physics and braneworld models of dark energy, the nature of possible future singularities, the effect of higher order curvature terms to avoid a Big Rip singularity, and approaches to modifying gravity which leads to a late-time accelerated expansion without recourse to a new form of dark energy.Comment: 93 pages, 26 figures, Invited Review to be submitted to International Journal of Modern Physics D; comments are welcome; Additional references included in response to over 60 comments received. Rewriting of sub-sections on anthropic principle and gravitational backreaction. New subsections adde

Variational Integrators for the Gravitational N-Body Problem

This paper describes a fourth-order integration algorithm for the gravitational N-body problem based on discrete Lagrangian mechanics. When used with shared timesteps, the algorithm is momentum conserving and symplectic. We generalize the algorithm to handle individual time steps; this introduces fifth-order errors in angular momentum conservation and symplecticity. We show that using adaptive block power of two timesteps does not increase the error in symplecticity. In contrast to other high-order, symplectic, individual timestep, momentum-preserving algorithms, the algorithm takes only forward timesteps. We compare a code integrating an N-body system using the algorithm with a direct-summation force calculation to standard stellar cluster simulation codes. We find that our algorithm has about 1.5 orders of magnitude better symplecticity and momentum conservation errors than standard algorithms for equivalent numbers of force evaluations and equivalent energy conservation errors.Comment: 31 pages, 8 figures. v2: Revised individual-timestepping description, expanded comparison with other methods, corrected error in predictor equation. ApJ, in pres

TREEOME: A framework for epigenetic and transcriptomic data integration to explore regulatory interactions controlling transcription

Motivation: Predictive modelling of gene expression is a powerful framework for the in silico exploration of transcriptional regulatory interactions through the integration of high-throughput -omics data. A major limitation of previous approaches is their inability to handle conditional and synergistic interactions that emerge when collectively analysing genes subject to different regulatory mechanisms. This limitation reduces overall predictive power and thus the reliability of downstream biological inference. Results: We introduce an analytical modelling framework (TREEOME: tree of models of expression) that integrates epigenetic and transcriptomic data by separating genes into putative regulatory classes. Current predictive modelling approaches have found both DNA methylation and histone modification epigenetic data to provide little or no improvement in accuracy of prediction of transcript abundance despite, for example, distinct anti-correlation between mRNA levels and promoter-localised DNA methylation. To improve on this, in TREEOME we evaluate four possible methods of formulating gene-level DNA methylation metrics, which provide a foundation for identifying gene-level methylation events and subsequent differential analysis, whereas most previous techniques operate at the level of individual CpG dinucleotides. We demonstrate TREEOME by integrating gene-level DNA methylation (bisulfite-seq) and histone modification (ChIP-seq) data to accurately predict genome-wide mRNA transcript abundance (RNA-seq) for H1-hESC and GM12878 cell lines. Availability: TREEOME is implemented using open-source software and made available as a pre-configured bootable reference environment. All scripts and data presented in this study are available online at http://sourceforge.net/projects/budden2015treeome/.Comment: 14 pages, 6 figure

Classical theory of radiating strings

The divergent part of the self force of a radiating string coupled to gravity, an antisymmetric tensor and a dilaton in four dimensions are calculated to first order in classical perturbation theory. While this divergence can be absorbed into a renormalization of the string tension, demanding that both it and the divergence in the energy momentum tensor vanish forces the string to have the couplings of compactified N = 1 D = 10 supergravity. In effect, supersymmetry cures the classical infinities

Self-tuning and the derivation of the Fab Four

We have recently proposed a special class of scalar tensor theories known as the Fab Four. These arose from attempts to analyse the cosmological constant problem within the context of Horndeski's most general scalar tensor theory. The Fab Four together give rise to a model of self-tuning, with the relevant solutions evading Weinberg's no-go theorem by relaxing the condition of Poincare invariance in the scalar sector. The Fab Four are made up of four geometric terms in the action with each term containing a free potential function of the scalar field. In this paper we rigorously derive this model from the general model of Horndeski, proving that the Fab Four represents the only classical scalar tensor theory of this type that has any hope of tackling the cosmological constant problem. We present the full equations of motion for this theory, and give an heuristic argument to suggest that one might be able to keep radiative corrections under control. We also give the Fab Four in terms of the potentials presented in Deffayet et al's version of Horndeski.Comment: 25 pages, 1 figur

Development of resins for composites by resin transfer molding

Designed to cover a wide range of resin technology and to meet the near-term and long-term needs of the aircraft industry, this research has three objectives: to produce resin transfer molding (RES) resins with improved processability, to produce prepreg systems with high toughness and service temperature, and to produce new resin systems. Progress on reaching the objectives is reported

Dark energy after GW170817, revisited

We revisit the status of scalar-tensor theories with applications to dark energy in the aftermath of the gravitational wave signal GW170817 and its optical counterpart GRB170817A. At the level of the cosmological background, we identify a class of theories, previously declared unviable in this context, whose anomalous gravitational wave speed is proportional to the scalar equation of motion. As long as the scalar field is assumed not to couple directly to matter, this raises the possibility of compatibility with the gravitational wave data, for any cosmological sources, thanks to the scalar dynamics. This newly "rescued" class of theories includes examples of generalised quintic galileons from Horndeski theories. Despite the promise of this leading order result, we show that the loophole ultimately fails when we include the effect of large scale inhomogeneities.Comment: Updated with corrections to the gravitational wave propagation coming from higher order terms in the presence of large scale inhomogeneities. These close off any remaining loopholes. References adde

Influence of reheating on the trispectrum and its scale dependence

We study the evolution of the non-linear curvature perturbation during perturbative reheating, and hence how observables evolve to their final values which we may compare against observations. Our study includes the evolution of the two trispectrum parameters, \gnl and \taunl, as well as the scale dependence of both \fnl and \taunl. In general the evolution is significant and must be taken into account, which means that models of multifield inflation cannot be compared to observations without specifying how the subsequent reheating takes place. If the trispectrum is large at the end of inflation, it normally remains large at the end of reheating. In the classes of models we study, it is very hard to generate \taunl\gg\fnl^2, regardless of the decay rates of the fields. Similarly, for the classes of models in which \gnl\simeq\taunl during slow--roll inflation, we find the relation typically remains valid during reheating. Therefore it is possible to observationally test such classes of models without specifying the parameters of reheating, even though the individual observables are sensitive to the details of reheating. It is hard to generate an observably large \gnl however. The runnings, \nfnl and \ntaunl, tend to satisfy a consistency relation \ntaunl=(3/2)\nfnl, but are in general too small to be observed for the class of models considered regardless of reheating timescale

Kinematic Density Waves in Accretion Disks

When thin accretion disks around black holes are perturbed, the main restoring force is gravity. If gas pressure, magnetic stresses, and radiation pressure are neglected, the disk remains thin as long as orbits do not intersect. Intersections would result in pressure forces which limit the growth of perturbations. We find that a discrete set of perturbations is possible for which orbits remain non-intersecting for arbitrarily long times. These modes define a discrete set of frequencies. We classify all long-lived perturbations for arbitrary potentials and show how their mode frequencies are related to pattern speeds computed from the azimuthal and epicyclic frequencies. We show that modes are concentrated near radii where the pattern speed has vanishing radial derivative. We explore these modes around Kerr black holes as a possible explanation for the high-frequency quasi-periodic oscillations of black hole binaries such as GRO J1655-40. The long-lived modes are shown to coincide with diskoseismic waves in the limit of small sound speed. While the waves have long lifetime, they have the wrong frequencies to explain the pairs of high-frequency quasi-periodic oscillations observed in black hole binaries.Comment: 28 pages, 6 figures; extended comparison with diskoseismology; added reference to astro-ph/060368