Uncovering trophic interactions in arthropod predators through DNA shotgun-sequencing of gut contents

Characterizing trophic networks is fundamental to many questions in ecology, but this typically requires painstaking efforts, especially to identify the diet of small generalist predators. Several attempts have been devoted to develop suitable molecular tools to determine predatory trophic interactions through gut content analysis, and the challenge has been to achieve simultaneously high taxonomic breadth and resolution. General and practical methods are still needed, preferably independent of PCR amplification of barcodes, to recover a broader range of interactions. Here we applied shotgun-sequencing of the DNA from arthropod predator gut contents, extracted from four common coccinellid and dermapteran predators co-occurring in an agroecosystem in Brazil. By matching unassembled reads against six DNA reference databases obtained from public databases and newly assembled mitogenomes, and filtering for high overlap length and identity, we identified prey and other foreign DNA in the predator guts. Good taxonomic breadth and resolution was achieved (93% of prey identified to species or genus), but with low recovery of matching reads. Two to nine trophic interactions were found for these predators, some of which were only inferred by the presence of parasitoids and components of the microbiome known to be associated with aphid prey. Intraguild predation was also found, including among closely related ladybird species. Uncertainty arises from the lack of comprehensive reference databases and reliance on low numbers of matching reads accentuating the risk of false positives. We discuss caveats and some future prospects that could improve the use of direct DNA shotgun-sequencing to characterize arthropod trophic networks

Intraguild predation involving Harmonia axyridis: a review of current knowledge and future perspectives.

As an effective generalist predator of aphids and other hemipteran pests H. axyridis has been a successful biological control agent. However, the very functional traits that have contributed to its success in this regard also implicate it as an intraguild predator that poses a significant risk not only to the diversity of other natural enemies of Hemiptera (and their associated ecosystem services), but to biodiversity more widely. In this paper we will specifically review the existing data on intraguild predation involving H. axyridis, and consider the strength and symmetry of such interactions both within its native guild and within exotic guilds where it has established as an invasive alien. We will use these studies to interpret the observed population declines in predator diversity in the field, predict species at risk in regions not yet invaded and consider implications for resulting ecosystem services. We will also indicate gaps in our knowledge that require further study in order to identify opportunities for mitigation

Ecological effects of invasive alien species on native communities, with particular emphasis on the interactions between aphids and ladybirds

The ecological effects of introduced species on native organisms can sometimes, but not always be significant. The risks associated with invasive alien pests are difficult to quantify. This paper concentrates on the ecological effects of invasive insect predators that feed on pest insects, because the former may potentially affect the biological control of the latter. The literature indicates that invasive predatory insects generally are resistant to changes in environmental conditions, long-lived and voracious with a high reproductive rate, high dispersal ability, able to spread very rapidly across landscapes and exhibit phenotypic plasticity. Their colonization of patches of prey may induce native predators to leave, but the evidence that invaders negatively affect the abundance of the native species is scarce and not persuasive. Insect predators do not substantially affect the abundance of their prey, if the ratio of generation time of the predator to that of the prey is large (the generation time ratio hypothesis), therefore the effect of an invasion by long-lived alien predators on systems consisting of long-lived native predators and short-lived prey on the abundance of the prey is hard to detect