Structure-Based High-Throughput Epitope Analysis of Hexon Proteins in B and C Species Human Adenoviruses (HAdVs)

Human adenoviruses (HAdVs) are the etiologic agent of many human infectious diseases. The existence of at least 54 different serotypes of HAdVs has resulted in difficulties in clinical diagnosis. Acute respiratory tract disease (ARD) caused by some serotypes from B and C species is particularly serious. Hexon, the main coat protein of HAdV, contains the major serotype-specific B cell epitopes; however, few studies have addressed epitope mapping in most HAdV serotypes. In this study, we utilized a novel and rapid method for the modeling of homologous proteins based on the phylogenetic tree of protein families and built three-dimensional (3D) models of hexon proteins in B and C species HAdVs. Based on refined hexon structures, we used reverse evolutionary trace (RET) bioinformatics analysis combined with a specially designed hexon epitope screening algorithm to achieve high-throughput epitope mapping of all 13 hexon proteins in B and C species HAdVs. This study has demonstrated that all of the epitopes from the 13 hexon proteins are located in the proteins' tower regions; however, the exact number, location, and size of the epitopes differ among the HAdV serotypes

Synergies between the key biodiversity area and systematic conservation planning approaches

Systematic conservation planning and Key Biodiversity Areas (KBAs) are the two most widely used approaches for identifying important sites for biodiversity. However, there is limited advice for conservation policy makers and practitioners on when and how they should be combined. Here we provide such guidance, using insights from the recently developed Global Standard for the Identification of KBAs and the language of decision science to review and clarify their similarities and differences. We argue the two approaches are broadly similar, with both setting transparent environmental objectives and specifying actions. There is however greater contrast in the data used and actions involved, as the KBA approach uses biodiversity data alone and identifies sites for monitoring and vigilance actions at a minimum, whereas systematic conservation planning combines biodiversity and implementation‐relevant data to guide management actions. This difference means there is much scope for combining approaches, so conservation planners should use KBA data in their analyses, setting context‐specific targets for each KBA type, and planners and donors should use systematic conservation planning techniques when prioritizing between KBAs for management action. In doing so, they will benefit conservation policy, practice and research by building on the collaborations formed through the KBA Standard's development

Identification of molecular signatures specific for distinct cranial sensory ganglia in the developing chick

Background The cranial sensory ganglia represent populations of neurons with distinct functions, or sensory modalities. The production of individual ganglia from distinct neurogenic placodes with different developmental pathways provides a powerful model to investigate the acquisition of specific sensory modalities. To date there is a limited range of gene markers available to examine the molecular pathways underlying this process. Results Transcriptional profiles were generated for populations of differentiated neurons purified from distinct cranial sensory ganglia using microdissection in embryonic chicken followed by FAC-sorting and RNAseq. Whole transcriptome analysis confirmed the division into somato- versus viscerosensory neurons, with additional evidence for subdivision of the somatic class into general and special somatosensory neurons. Cross-comparison of distinct ganglia transcriptomes identified a total of 134 markers, 113 of which are novel, which can be used to distinguish trigeminal, vestibulo-acoustic and epibranchial neuronal populations. In situ hybridisation analysis provided validation for 20/26 tested markers, and showed related expression in the target region of the hindbrain in many cases. Results One hundred thirty-four high-confidence markers have been identified for placode-derived cranial sensory ganglia which can now be used to address the acquisition of specific cranial sensory modalities.</p

Evaluation and monitoring of office markets

The main aim of this study is to understand the relevant variables underlying the mechanisms of office supply, office demand, and market equilibrium to support municipal decision-making processes. Public decisions, at the local level, are expected to ensure that office prices are kept under control, avoiding the speculative behaviour of real-estate agents, and are able to prepare appropriate forms of intervention over supply and demand, in the short term as well as in the medium or long term. In order to reach these goals an identification of the most relevant variables that shape office supply and office demand and their respective elasticities is carried out, and ongoing supply, demand, and market equilibrium hedonic appraisal models are developed. These models allow for: (1)�the computation of the influence of the identified variables on office prices (per rm m 2); (2)�the measurement of the price gaps between demand and supply according to location; and (3)�the characterisation of market balances. Despite short-term adjustments between supply and demand functions, in search of market equilibrium, balances are ephemeral because they are modelled by different factors that change over time. However, these models can be adjusted and applied to different moments in time and extended to other urban contexts. As such they are able to support municipal decisions concerning land-use office location and management.

Blood Pressure in Healthy Pregnancy and Factors Associated With No Mid-Trimester Blood Pressure Drop: A Prospective Cohort Study.

BACKGROUND: The well-known mid-trimester drop in blood pressure (BP) during normal pregnancy was recently questioned. OBJECTIVE: To describe longitudinal changes in BP during healthy pregnancies and to investigate factors associated with no mid-trimester drop in BP. METHODS: A prospective cohort with 158 healthy pregnant women was followed up in a public health care center in Rio de Janeiro, Brazil. We used linear mixed-effects models to estimate longitudinal changes in systolic BP (SBP) and diastolic BP (DBP) during pregnancy. Poisson regression models were performed to identify factors associated with no mid-trimester drop in BP. RESULTS: Significant mid-trimester increase in SBP (5.6mm Hg; 95% confidence interval (CI) = 4.6-6.7) and DBP (4.4mm Hg; 95% CI = 3.4-5.3) was observed in 44.3% and 39.9% of the sample, respectively. Women (37.1%) who had not a mid-trimester SBP drop still had a DBP drop. White skin color (incidence ratio (IR): 1.71; 95% CI = 1.22-2.39), family history of hypertension (IR: 1.93; 95% CI = 1.29-2.89), early pregnancy obesity (IR: 2.29; 95% CI = 1.27-4.11), outside temperature variation (IR: 1.45; 95% CI = 1.00-2.10), and gestational weight gain from the first to second trimester (IR: 1.71; 95% CI = 1.01-2.88 and IR: 2.32; 95% CI = 1.39-3.89 for second and third tertiles) were characteristics associated with no mid-trimester drop in SBP. The same characteristics were associated with no mid-trimester drop in DBP, except family history of hypertension and outside temperature variation. CONCLUSIONS: Some women without a mid-trimester SBP drop still present a DBP drop. The different patterns of mid-trimester change in BP seem to be determined by preexisting and pregnancy-related factors