A new method for the estimation of variance matrix with prescribed zeros in nonlinear mixed effects models

We propose a new method for the Maximum Likelihood Estimator (MLE) of nonlinear mixed effects models when the variance matrix of Gaussian random effects has a prescribed pattern of zeros (PPZ). The method consists in coupling the recently developed Iterative Conditional Fitting (ICF) algorithm with the Expectation Maximization (EM) algorithm. It provides positive definite estimates for any sample size, and does not rely on any structural assumption on the PPZ. It can be easily adapted to many versions of EM.Comment: Accepted for publication in Statistics and Computin

Fauna of euglossina (Hymenoptera: Apidae) from southwestern Amazonia, Acre, Brazil

Male orchid bees were collected between December 2005 and September 2006 in 11 forest areas of different sizes in the region of Rio Branco, Acre, Southwestern Amazonia, Brazil. The bees were attracted by 6 aromatic compounds and collected by insect nets and scent baited traps. A total of 3,675 males of Euglossina in 4 genera and 36 species were collected. Eulaema cingulata (Fabricius) was the most common (24.6%), followed by Eulaema meriana (Olivier) (14.6%), Euglossa amazonica Dressler (10.5%), Eulaema nigrita Lepeletier (10.5%) and Eulaema pseudocingulata (Oliveira) (7.2%). Cineole was the scent that attracted the greatest number of individuals (23.8%) and methyl salicylate the greatest number of species (28) for both methods of sampling. Thirty one bees of 9 species with pollinar orchid attached to their bodies were collected. The accumulative number of species stabilized after the 48th collection. Few species were abundant; the great majority were represented by less than 50 bees. The lack of standardized sample protocols limited very much the conclusions derived from comparisons among the majority of studies on Euglossina assemblages. However, the results presented here suggest that the State of Acre is very rich in those bees compared to other regions.Machos de abelhas Euglossina foram coletados entre dezembro de 2005 e setembro de 2006 em 11 áreas florestais de diferentes tamanhos na região de Rio Branco, Acre, Amazônia Sul-Ocidental. As abelhas foram atraídas por 6 substâncias odoríferas e coletadas com rede entomológica e armadilhas. Um total de 3.675 machos de Euglossina pertencentes a 4 gêneros e 36 espécies foi coletado. Eulaema cingulata (Fabricius) foi a espécie mais comum (24,6%), seguida por Eulaema meriana (Olivier) (14,6%), Euglossa amazonica Dressler (10,5%), Eulaema nigrita Lepeletier (10,5%) e Eulaema pseudocingulata (Oliveira) (7,2%). Cineol foi a substância que atraiu maior número de indivíduos (23,8%) e metil salicilato o maior número de espécies (28) para ambos os métodos de coleta. Foram coletados 31 indivíduos pertencentes a 9 espécies portando polinários. O número acumulado de espécies coletadas na região estabilizou a partir da 48ª coleta. Poucas espécies foram abundantes, a maioria representada por menos que 50 indivíduos. A falta de um protocolo amostral padronizado tem limitado comparações entre trabalhos realizados em diferentes regiões. Contudo, os resultados aqui apresentados indicam que o Acre apresenta elevada riqueza dessas abelhas

Upregulation of vascular endothelial growth factor (VEGF) in the retinas of transgenic mice overexpressing interleukin-1ß (IL-1ß) in the lens and mice undergoing retinal degeneration

IL-1ß is a pro-inflammatory agent associated with angiogenesis and increased vascular permeability. To determine whether IL-1ß elicits these responses through an upregulation of VEGF, transgenic mice that overexpress IL-1ß in the lens were evaluated at various time points for the localization of VEGF, the location and extent of blood-retinal barrier (BRB) breakdown, and the origin and extent of neovascularization (NV). In homozygous and heterozygous transgenic mice, but not controls, intense VEGF immunoreactivity was scattered throughout the retina at postnatal days 5-7 (P5-7), just after the onset of inflammatory cell infiltration. VEGF staining in the retina remained widespread, but weak from P9-15. Beginning at P15, the intensity of VEGF immunoreactivity achieved a second peak, which it maintained through adulthood. This peak coincided with significant retinal destruction due to massive inflammation. The onset of BRB breakdown coincided with the upregulation of VEGF (P5-7) and widespread BRB breakdown was demonstrated from about P9. From P9-12, aggregates of cells positive for Griffonia simplicifolia isolectin-B4, a marker for vascular endothelial cells, formed on the retinal surface. These cells migrated into the retina at P12-15 with the more superficial cells forming a network of vessels and the deeper cells remaining in small clusters, thus demonstrating that NV occurs much later than BRB breakdown. Non-transgenic FVB/N mice, which undergo retinal degeneration beginning at about P9, also demonstrate the latter peak of VEGF upregulation and the accompanying BRB breakdown, but not the early upregulation. VEGF immunostaining of transgenic and non-transgenic mouse retinas was eliminated by preincubation of the VEGF antibodies with VEGF peptide. The data suggest that the early peak of VEGF upregulation (P5-7) and its accompanying BRB breakdown is due to IL-1ß expression and is likely to be dependent on inflammatory cell infiltration. The latter peak appears to be related to retinal destruction