Population Dynamics and Community Composition of Ammonia Oxidizers in Salt Marshes after the Deepwater Horizon Oil Spill

The recent oil spill in the Gulf of Mexico had significant effects on microbial communities in the Gulf, but impacts on nitrifying communities in adjacent salt marshes have not been investigated. We studied persistent effects of oil on ammonia-oxidizing archaeal (AOA) and bacterial (AOB) communities and their relationship to nitrification rates and soil properties in Louisiana marshes impacted by the Deepwater Horizon oil spill. Soils were collected at oiled and unoiled sites from Louisiana coastal marshes in July 2012, 2 years after the spill, and analyzed for community differences based on ammonia monooxygenase genes (amoA). Terminal Restriction Fragment Polymorphism and DNA sequence analyses revealed significantly different AOA and AOB communities between the three regions, but few differences were found between oiled and unoiled sites. Community composition of nitrifiers was best explained by differences in soil moisture and nitrogen content. Despite the lack of significant oil effects on overall community composition, we identified differences in correlations of individual populations with potential nitrification rates between oiled and unoiled sites that help explain previously published correlation patterns. Our results suggest that exposure to oil, even 2 years post-spill, led to subtle changes in population dynamics. How, or if, these changes may impact ecosystem function in the marshes, however, remains uncertain

Controls of benthic nitrogen fixation and primary production from nutrient enrichment of oligotrophic, Arctic lakes

© The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ecosystems 16 (2013): 1550-1564, doi:10.1007/s10021-013-9701-0.We examined controls of benthic dinitrogen (N2) fixation and primary production in oligotrophic lakes in Arctic Alaska, Toolik Field Station (Arctic Long-Term Ecological Research Site). Primary production in many oligotrophic lakes is limited by nitrogen (N), and benthic processes are important for whole-lake function. Oligotrophic lakes are increasingly susceptible to low-level, non-point source nutrient inputs, yet the effects on benthic processes are not well understood. This study examines the results from a whole-lake fertilization experiment in which N and P were added at a relatively low level (4 times natural loading) in Redfield ratio to a shallow (3 m) and a deep (20 m) oligotrophic lake. The two lakes showed similar responses to fertilization: benthic primary production and respiration (each 50–150 mg C m−2 day−1) remained the same, and benthic N2 fixation declined by a factor of three- to fourfold by the second year of treatment (from ~0.35 to 0.1 mg N m−2 day−1). This showed that the response of benthic N2 fixation was de-coupled from the nutrient limitation status of benthic primary producers and raised questions about the mechanisms, which were examined in separate laboratory experiments. Bioassay experiments in intact cores also showed no response of benthic primary production to added N and P, but contrasted with the whole-lake experiment in that N2 fixation did not respond to added N, either alone or in conjunction with P. This inconsistency was likely a result of nitrogenase activity of existing N2 fixers during the relative short duration (9 days) of the bioassay experiment. N2 fixation showed a positive saturating response when light was increased in the laboratory, but was not statistically related to ambient light level in the field, leading us to conclude that light limitation of the benthos from increasing water-column production was not important. Thus, increased N availability in the sediments through direct uptake likely caused a reduction in N2 fixation. These results show the capacity of the benthos in oligotrophic systems to buffer the whole-system response to nutrient addition by the apparent ability for significant nutrient uptake and the rapid decline in N2 fixation in response to added nutrients. Reduced benthic N2 fixation may be an early indicator of a eutrophication response of lakes which precedes the transition from benthic to water-column-dominated systems.This project was supported by NSF-OPP 9732281, NSF-DEB 9810222, NSF-DEB 0423385, and by a Doctoral Dissertation Improvement Grant NSF-DEB 0206173. Additional funding was provided by the Small Grants Program through the NSF-IGERT Program in Biogeochemistry and Environmental Change at Cornell University

Dynamic behavior of magnetic avalanches in the spin-ice compound Dy2_2Ti2_2O7_7

Avalanches of the magnetization, that is to say an abrupt reversal of the magnetization at a given field, have been previously reported in the spin-ice compound Dy$_{2}$Ti$_{2}$O$_{7}$. This out-of-equilibrium process, induced by magneto-thermal heating, is quite usual in low temperature magnetization studies. A key point is to determine the physical origin of the avalanche process. In particular, in spin-ice compounds, the origin of the avalanches might be related to the monopole physics inherent to the system. We have performed a detailed study of the avalanche phenomena in three single crystals, with the field oriented along the [111] direction, perpendicular to [111] and along the [100] directions. We have measured the changing magnetization during the avalanches and conclude that avalanches in spin ice are quite slow compared to the avalanches reported in other systems such as molecular magnets. Our measurements show that the avalanches trigger after a delay of about 500 ms and that the reversal of the magnetization then occurs in a few hundreds of milliseconds. These features suggest an unusual propagation of the reversal, which might be due to the monopole motion. The avalanche fields seem to be reproducible in a given direction for different samples, but they strongly depend on the initial state of magnetization and on how the initial state was achieved.Comment: 11 pages, 14 figure

Effect of continuous light on leaf wax isotope ratios in Betula nana and Eriophorum vaginatum: Implications for Arctic paleoclimate reconstructions

Author Posting. © The Author(s), 2018. This is the author's version of the work. It is posted here under a nonexclusive, irrevocable, paid-up, worldwide license granted to WHOI. It is made available for personal use, not for redistribution. The definitive version was published in Organic Geochemistry 125 (2018): 70-81, doi: 10.1016/j.orggeochem.2018.08.008.Reconstructions of climate using leaf wax D/H ratios (δDwax) require accounting for the apparent isotopic fractionation (εapp) between plant source water and waxes. There have been conflicting publications on whether plants in the Arctic growing under 24-hour continuous light, fractionate less than temperate and tropical plants. In this study, we examine the effect of diurnal light (DL) versus 24-hour continuous light (CL) on the isotopic composition of leaf n-alkanes and n-acids in greenhouse experiments using two common Arctic plants (Eriophorum vaginatum, or tussock cottongrass and Betula nana, or dwarf birch). For E. vaginatum, the δDwax values of various wax homologues were 5–11‰ more positive for CL plants relative to their DL counterparts, whereas for B. nana, CL waxes were 3–24‰ more negative, suggesting that daylight length is not a unifying control on leaf wax D/H ratios of Arctic plants. The δ13Cwax of B. nana was more negative for plants grown in continuous light compared to diurnal light, reflecting lower water-use efficiency, associated with prolonged stomatal opening in the CL treatment. We modeled the impact of increasing stomatal conductance and effective flow path lengths (mimicking variable leaf morphologies) on the isotopic composition of leaf waters (δDlw) and find that variations in leaf-water enrichment may explain the variable δDwax responses seen between E. vaginatum and B. nana. We suggest that between-species differences in the δDlw response to light, and differences in the utilization of stored carbohydrates, were important for governing δDwax. Our greenhouse results suggest that Arctic plant leaf waxes do not consistently display reduced εapp values as a result of 24-hour day light, providing additional support for field observations.We thank Fred Jackson and Chris Claussen of the Brown University Plant Environmental Center for assistance with growth chambers, Chelsea Parker for assistance in plant care, and Rafael Tarozo for laboratory assistance. We want to thank Trevor Porter and three anonymous reviewers for constructive comments to improve the manuscript. This work was funded by NSF Arctic Natural Sciences grant 1503846 to Yongsong Huang and James Russell and NSF-OPP grant 1603214 to Anne Giblin. We also acknowledge graduate support for Will Daniels from the Brown-MBL joint graduate program and the Institute at Brown for Environment and Society

Reverse taxonomy for elucidating diversity of insect-associated nematodes: a case study with termites

BACKGROUND: The molecular operational taxonomic unit(MOTU)has recently been applied to microbial and microscopic animal biodiversity surveys. However, in many cases, some of the MOTUs cannot be definitively tied to any of the taxonomic groups in current databases. To surmount these limitations, the concept of "reverse taxonomy" has been proposed, i.e. to primarily list the MOTUs with morphological information, and then identify and/or describe them at genus/species level using subsamples or by re-isolating the target organisms. Nevertheless, the application of "reverse taxonomy" has not been sufficiently evaluated. Therefore, the practical applicability of "reverse taxonomy" is tested using termite-associated nematodes as a model system for phoretic/parasitic organisms which have high habitat specificity and a potential handle (their termite host species) for re-isolation attempts. METHODOLOGY: Forty-eight species (from 298 colonies) of termites collected from the American tropics and subtropics were examined for their nematode associates using the reverse taxonomy method and culturing attempts (morphological identification and further sequencing efforts). The survey yielded 51 sequence types (= MOTUs) belonging to 19 tentatively identified genera. Within these, four were identified based on molecular data with preliminary morphological observation, and an additional seven were identified or characterized from successful culturing, leaving eight genera unidentified. CONCLUSIONS: That 1/3 of the genera were not successfully identified suggests deficiencies in the depth of available sequences in the database and biological characters, i.e. usually isolated as phoretic/parasitic stages which are not available for morphological identification, and too many undiscovered lineages of nematodes. Although there still is the issue of culturability of nematodes, culturing attempts could help to make reverse taxonomy methods more effective. However, expansion of the database, i.e., production of more DNA barcodes tied to biological information by finding and characterizing additional new and known lineages, is necessary for analyzing functional diversity.Natsumi Kanzaki, Robin M. Giblin-Davis, Rudolf H. Scheffrahn, Hisatomo Taki, Alejandro Esquivel, Kerrie A. Davies and E. Allen Herr

Precession of a Freely Rotating Rigid Body. Inelastic Relaxation in the Vicinity of Poles

When a solid body is freely rotating at an angular velocity ${\bf \Omega}$, the ellipsoid of constant angular momentum, in the space $\Omega_1, \Omega_2, \Omega_3$, has poles corresponding to spinning about the minimal-inertia and maximal-inertia axes. The first pole may be considered stable if we neglect the inner dissipation, but becomes unstable if the dissipation is taken into account. This happens because the bodies dissipate energy when they rotate about any axis different from principal. In the case of an oblate symmetrical body, the angular velocity describes a circular cone about the vector of (conserved) angular momentum. In the course of relaxation, the angle of this cone decreases, so that both the angular velocity and the maximal-inertia axis of the body align along the angular momentum. The generic case of an asymmetric body is far more involved. Even the symmetrical prolate body exhibits a sophisticated behaviour, because an infinitesimally small deviation of the body's shape from a rotational symmetry (i.e., a small difference between the largest and second largest moments of inertia) yields libration: the precession trajectory is not a circle but an ellipse. In this article we show that often the most effective internal dissipation takes place at twice the frequency of the body's precession. Applications to precessing asteroids, cosmic-dust alignment, and rotating satellites are discussed.Comment: 47 pages, 1 figur

The discovery of polarization in the afterglow of GRB 990510 with the ESO Very Large Telescope

Following a BeppoSAX alert (Piro 1999a) and the discovery of the OT at SAAO (Vreeswijk et al. 1999a), we observed GRB 990510 with the FORS instrument on ESO's VLT Unit 1 (`Antu'). The burst is unremarkable in gamma rays, but in optical is the first one to show good evidence for jet-like outflow (Stanek et al. 1999, Harrison et al. 1999). We report the detection of significant linear polarization in the afterglow: it is (1.6 +/- 0.2)% 0.86 days after trigger, and after 1.81 days is consistent with that same value, but much more uncertain. The polarization angle is constant on a time scale of hours, and may be constant over one day. We conclude that the polarization is intrinsic to the source and due to the synchrotron nature of the emission, and discuss the random and ordered field geometries that may be responsible for it.Comment: submitted to ApJ Lett., 5 pages including 2 figures, uses emulateapj.st

Design and development of a low temperature, inductance based high frequency ac susceptometer

We report on the development of an induction based low temperature high frequency ac susceptometer capable of measuring at frequencies up to 3.5 MHz and at temperatures between 2 K and 300 K. Careful balancing of the detection coils and calibration have allowed a sample magnetic moment resolution of $5\times10^{-10} Am^2$ at 1 MHz. We will discuss the design and characterization of the susceptometer, and explain the calibration process. We also include some example measurements on the spin ice material CdEr$_2$S$_4$ and iron oxide based nanoparticles to illustrate functionality