In Situ Geochronology on the Mars 2020 Rover with KArLE (Potassium-Argon Laser Experiment)

If extinct and/or extant life is discovered on Mars, knowledge of the chronology of the biosphere will be of paramount importance. KArLE will provide absolute ages of Mars 2020 rocks, which will allow us to understand them in the context of Mars' geologic history, connect them to other landing sites, and compare Martian epochs of habitability with the Earth's history and evolution of life. KArLE significantly enhances the ability of Mars 2020 to meet its science objectives by performing in situ age dating on key lithologies, enabling targeted searches for ancient biosignatures and increasing the chances of identifying evidence for Martian microbial life. The KArLE investigation makes its measurements on a core sample obtained with the rover drill, inserted into a small, mechanically simple chamber, followed by interrogation by laser-induced breakdown spectroscopy (LIBS), mass spectrometry, and optical imaging. The KArLE experiment is flexible enough to accommodate any partner providing these instrument components, a creative approach that extends the ability of the Mars 2020 payload to accomplish an additional highly-desirable science measurement for low cost and risk and minimal extra hardware

Backbone conformational flexibility of the lipid modified membrane anchor of the human N-Ras protein investigated by solid-state NMR and molecular dynamics simulation

AbstractThe lipid modified human N-Ras protein, implicated in human cancer development, is of particular interest due to its membrane anchor that determines the activity and subcellular location of the protein. Previous solid-state NMR investigations indicated that this membrane anchor is highly dynamic, which may be indicative of backbone conformational flexibility. This article aims to address if a dynamic exchange between three structural models exist that had been determined previously. We applied a combination of solid-state nuclear magnetic resonance (NMR) methods and replica exchange molecular dynamics (MD) simulations using a Ras peptide that represents the terminal seven amino acids of the human N-Ras protein. Analysis of correlations between the conformations of individual amino acids revealed that Cys 181 and Met 182 undergo collective conformational exchange. Two major structures constituting about 60% of all conformations could be identified. The two conformations found in the simulation are in rapid exchange, which gives rise to low backbone order parameters and nuclear spin relaxation as measured by experimental NMR methods. These parameters were also determined from two 300 ns conventional MD simulations, providing very good agreement with the experimental data

Radiocarbon Based Ages and Growth Rates: Hawaiian Deep Sea Corals

The radial growth rates and ages of three different groups of Hawaiian deep-sea 'corals' were determined using radiocarbon measurements. Specimens of Corallium secundum, Gerardia sp., and Leiopathes glaberrima, were collected from 450 {+-} 40 m at the Makapuu deep-sea coral bed using a submersible (PISCES V). Specimens of Antipathes dichotoma were collected at 50 m off Lahaina, Maui. The primary source of carbon to the calcitic C. secundum skeleton is in situ dissolved inorganic carbon (DIC). Using bomb {sup 14}C time markers we calculate radial growth rates of {approx} 170 {micro}m y{sup -1} and ages of 68-75 years on specimens as tall as 28 cm of C. secundum. Gerardia sp., A. dichotoma, and L. glaberrima have proteinaceous skeletons and labile particulate organic carbon (POC) is their primary source of architectural carbon. Using {sup 14}C we calculate a radial growth rate of 15 {micro}m y{sup -1} and an age of 807 {+-} 30 years for a live collected Gerardia sp., showing that these organisms are extremely long lived. Inner and outer {sup 14}C measurements on four sub-fossil Gerardia spp. samples produce similar growth rate estimates (range 14-45 {micro}m y{sup -1}) and ages (range 450-2742 years) as observed for the live collected sample. Similarly, with a growth rate of < 10 {micro}m y{sup -1} and an age of {approx}2377 years, L. glaberrima at the Makapuu coral bed, is also extremely long lived. In contrast, the shallow-collected A. dichotoma samples yield growth rates ranging from 130 to 1,140 {micro}m y{sup -1}. These results show that Hawaiian deep-sea corals grow more slowly and are older than previously thought

Reproducibility of Ba/Ca variations recorded by northeast Pacific bamboo corals

Author Posting. © American Geophysical Union, 2017. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Paleoceanography 32 (2017): 966–979, doi:10.1002/2017PA003178.Trace elemental ratios preserved in the calcitic skeleton of bamboo corals have been shown to serve as archives of past ocean conditions. The concentration of dissolved barium (BaSW), a bioactive nutrientlike element, is linked to biogeochemical processes such as the cycling and export of nutrients. Recent work has calibrated bamboo coral Ba/Ca, a new BaSW proxy, using corals spanning the oxygen minimum zone beneath the California Current System. However, it was previously unclear whether Ba/Cacoral records were internally reproducible. Here we investigate the accuracy of using laser ablation inductively coupled plasma mass spectrometry for Ba/Cacoral analyses and test the internal reproducibility of Ba/Ca among replicate radial transects in the calcite of nine bamboo corals collected from the Gulf of Alaska (643–720 m) and the California margin (870–2054 m). Data from replicate Ba/Ca transects were aligned using visible growth bands to account for nonconcentric growth; smoothed data were reproducible within ~4% for eight corals (n = 3 radii/coral). This intracoral reproducibility further validates using bamboo coral Ba/Ca for BaSW reconstructions. Sections of the Ba/Ca records that were potentially influenced by noncarbonate bound Ba phases occurred in regions where elevated Mg/Ca or Pb/Ca and coincided with anomalous regions on photomicrographs. After removing these regions of the records, increased Ba/Cacoral variability was evident in corals between ~800 and 1500 m. These findings support additional proxy validation to understand BaSW variability on interannual timescales, which could lead to new insights into deep sea biogeochemistry over the past several centuries.NSF Grant Number: OCE-1420984; NOAA/OE Grant Number: NA16RP2637; MIT-WHOI Joint Program; American Geophysical Union Travel Grant; UC Davis President's Undergraduate Fellowship; Bowdoin College Gibbons Summer Research Fellowship2018-03-1

Sea Water Radiocarbon Evolution in the Gulf of Alaska: 2002 Observations

Oceanic uptake and transport of bomb radiocarbon as {sup 14}CO{sub 2} created by atmospheric nuclear weapons testing in the 1950s and 1960s has been a useful diagnostic to determine the carbon transfer between the ocean and atmosphere. In addition, the distribution of radiocarbon in the ocean can be used as a tracer of oceanic circulation. Results obtained from samples collected in the Gulf of Alaska in the summer of 2002 provide a direct comparison with results in the 1970s during GEOSECS and in the early 1990s during WOCE. The open gyre values are 20-40{per_thousand} more negative than those documented in 1991 and 1993 (WOCE) although the general trends as a function of latitude are reproduced. Surface values are still significantly higher than pre-bomb levels ({approx}-105{per_thousand} or lower). In the central gyre, we observe {Delta}{sup 14}C-values that are lower in comparison to GEOSECS (stn 218) and WOCE P16/P17 to a density of {approx}26.8{sigma}t. This observation is consistent with the overall decrease in surface {Delta}{sup 14}C values, and reflects the erosion of the bomb-{sup 14}C transient. We propose that erosion of the bomb-{sup 14}C transient is accomplished by entrainment of low {sup 14}C water via vertical exchange within the Gulf of Alaska and replenishment of surface and sub-thermocline waters with waters derived from the far northwest Pacific

Improving object segmentation by using EEG signals and rapid serial visual presentation

This paper extends our previous work on the potential of EEG-based brain computer interfaces to segment salient objects in images. The proposed system analyzes the Event Related Potentials (ERP) generated by the rapid serial visual presentation of windows on the image. The detection of the P300 signal allows estimating a saliency map of the image, which is used to seed a semi-supervised object segmentation algorithm. Thanks to the new contributions presented in this work, the average Jaccard index was improved from $0.47$ to $0.66$ when processed in our publicly available dataset of images, object masks and captured EEG signals. This work also studies alternative architectures to the original one, the impact of object occupation in each image window, and a more robust evaluation based on statistical analysis and a weighted F-score

MultiSig: a new high-precision approach to the analysis of complex biomolecular systems

MultiSig is a newly developed mode of analysis of sedimentation equilibrium (SE) experiments in the analytical ultracentrifuge, having the capability of taking advantage of the remarkable precision (~0.1 % of signal) of the principal optical (fringe) system employed, thus supplanting existing methods of analysis through reducing the ‘noise’ level of certain important parameter estimates by up to orders of magnitude. Long-known limitations of the SE method, arising from lack of knowledge of the true fringe number in fringe optics and from the use of unstable numerical algorithms such as numerical differentiation, have been transcended. An approach to data analysis, akin to ‘spatial filtering’, has been developed, and shown by both simulation and practical application to be a powerful aid to the precision with which near-monodisperse systems can be analysed, potentially yielding information on protein-solvent interaction. For oligo- and poly-disperse systems the information returned includes precise average mass distributions over both cell radial and concentration ranges and mass-frequency histograms at fixed radial positions. The application of MultiSig analysis to various complex heterogenous systems and potentially multiply-interacting carbohydrate oligomers is described