Two-dimensional performance of MIPAS observation modes in the upper-troposphere/lower-stratosphere

Abstract. In this paper we analyze the performance of the three MIPAS (Michelson Interferometer for Passive Atmospheric Sounding) observation modes that sound the Upper-Troposphere/Lower-Stratosphere (UT/LS) region. The two-dimensional (2-D) tomographic retrieval approach is assumed to derive the atmospheric field of geophysical parameters. For each observation mode we have calculated the 2-D distribution of the information load quantifier relative to the main MIPAS targets. The performance of the observation modes has been evaluated in terms of strength and spatial coverage of the information-load distribution along the full orbit. The indications of the information-load analysis has been validated with simulated retrievals based on the observational parameters of real orbits. In the simulation studies we have assessed the precision and the spatial (both horizontal and vertical) resolution of the retrieval products. The performance of the three observation modes has been compared for the MIPAS main products in both the UT/LS and the extended altitude range. This study shows that the two observation modes that were specifically designed for the UT/LS region are actually competitive with the third one, designed for the whole stratosphere, up to altitudes that far exceed the UT/LS. In the UT/LS the performance of the two specific observation modes is comparable even if the best performance in terms of horizontal resolution is provided by the observation mode that was excluded by the European Space Agency (ESA) from the current MIPAS duty cycle. This paper reports the first application of the information-load analysis and highlights the worthiness of this approach to make qualitative considerations about retrieval potential and selection of retrieval grid

Position error in profiles retrieved from MIPAS observations with a 1-D algorithm

Abstract. The information load (IL) analysis, first introduced for the two-dimensional approach (Carlotti and Magnani, 2009), is applied to the inversion of MIPAS (Michelson Interferometer for Passive Atmospheric Sounding) observations operated with a 1-dimensional (1-D) retrieval algorithm. The IL distribution of MIPAS spectra is shown to be often asymmetrical with respect to the tangent points of the observations and permits us to define the preferential latitude where the profiles retrieved with a 1-D algorithm should be geo-located. Therefore, defining the geo-location of the retrieved profile by means of the tangent points leads to a "position error". We assess the amplitude of the position error for some of the MIPAS main products and we show that the IL analysis can also be used as a tool for the selection of spectral intervals that, when analyzed, minimize the position error of the retrieved profile. When the temperature (T) profiles are used for the retrieval of volume mixing ratio (VMR) of atmospheric constituents, the T-position error (of the order of 1.5 degrees of latitude) induces a VMR error that is directly connected with the horizontal T gradients. Temperature profiles can be externally-provided or determined in a previous step of the retrieval process. In the first case, the IL analysis shows that a meaningful fraction (often exceeding 50%) of the VMR error deriving from the 1-D approximation is to be attributed to the mismatch between the position assigned to the external T profile and the positions where T is required by the analyzed observations. In the second case the retrieved T values suffer by an error of 1.5–2 K due to neglecting the horizontal variability of T; however the error induced on VMRs is of minor concern because of the generally small mismatch between the IL distribution of the observations analyzed to retrieve T and those analyzed to retrieve the VMR target. An estimate of the contribution of the T-position error to the error budget is provided for MIPAS main products. This study shows that the information load analysis can be successfully exploited in a 1-D context that makes the assumption of horizontal homogeneity of the analyzed portion of atmosphere. The analysis that we propose can be extended to the 1-D inversion of other limb-sounding experiments

Extreme ozone depletion in the 2010–2011 Arctic winter stratosphere as observed by MIPAS/ENVISAT using a 2-D tomographic approach

Abstract. We present observations of the 2010–2011 Arctic winter stratosphere from the Michelson Interferometer for Passive Atmospheric Sounding (MIPAS) onboard ENVISAT. Limb sounding infrared measurements were taken by MIPAS during the Northern polar winter and into the subsequent spring, giving a continuous vertically resolved view of the Arctic dynamics, chemistry and polar stratospheric clouds (PSCs). We adopted a 2-D tomographic retrieval approach to account for the strong horizontal inhomogeneity of the atmosphere present under vortex conditions, self-consistently comparing 2011 to the 2-D analysis of 2003–2010. Unlike most Arctic winters, 2011 was characterized by a strong stratospheric vortex lasting until early April. Lower stratospheric temperatures persistently remained below the threshold for PSC formation, extending the PSC season up to mid-March, resulting in significant chlorine activation leading to ozone destruction. On 3 January 2011, PSCs were detected up to 30.5 ± 0.9 km altitude, representing the highest PSCs ever reported in the Arctic. Through inspection of MIPAS spectra, 83% of PSCs were identified as supercooled ternary solution (STS) or STS mixed with nitric acid trihydrate (NAT), 17% formed mostly by NAT particles, and only two cases by ice. In the lower stratosphere at potential temperature 450 K, vortex average ozone showed a daily depletion rate reaching 100 ppbv day−1. In early April at 18 km altitude, 10% of vortex measurements displayed total depletion of ozone, and vortex average values dropped to 0.6 ppmv. This corresponds to a chemical loss from early winter greater than 80%. Ozone loss was accompanied by activation of ClO, associated depletion of its reservoir ClONO2, and significant denitrification, which further delayed the recovery of ozone in spring. Once the PSC season halted, ClO was reconverted primarily into ClONO2. Compared to MIPAS observed 2003–2010 Arctic average values, the 2010–2011 vortex in late winter had 15 K lower temperatures, 40% lower HNO3 and 50% lower ozone, reaching the largest ozone depletion ever observed in the Arctic. The overall picture of this Arctic winter was remarkably closer to conditions typically found in the Antarctic vortex than ever observed before

Mutational patterns along different evolution paths of follicular lymphoma

Follicular lymphoma (FL) is an indolent disease, characterized by a median life expectancy of 18-20 years and by intermittent periods of relapse and remission. FL frequently transforms into the more aggressive diffuse large B cell lymphoma (t-FL). In previous studies, the analysis of immunoglobulin heavy chain variable region (IgHV) genes in sequential biopsies from the same patient revealed two different patterns of tumor clonal evolution: direct evolution, through acquisition of additional IgHV mutations over time, or divergent evolution, in which lymphoma clones from serial biopsies independently develop from a less-mutated common progenitor cell (CPC). Our goal in this study was to characterize the somatic hypermutation (SHM) patterns of IgHV genes in sequential FL samples from the same patients, and address the question of whether the mutation mechanisms (SHM targeting, DNA repair or both), or selection forces acting on the tumor clones, were different in FL samples compared to healthy control samples, or in late relapsed/transformed FL samples compared to earlier ones. Our analysis revealed differences in the distribution of mutations from each of the nucleotides when tumor and non-tumor clones were compared, while FL and transformed FL (t-FL) tumor clones displayed similar mutation distributions. Lineage tree measurements suggested that either initial clone affinity or selection thresholds were lower in FL samples compared to controls, but similar between FL and t-FL samples. Finally, we observed that both FL and t-FL tumor clones tend to accumulate larger numbers of potential N-glycosylation sites due to the introduction of new SHM. Taken together, these results suggest that transformation into t-FL, in contrast to initial FL development, is not associated with any major changes in DNA targeting or repair, or the selection threshold of the tumor clone

Single cell cloning and recombinant monoclonal antibodies generation from RA synovial B cells reveal frequent targeting of citrullinated histones of NETs

This work was funded by research grants from Arthritis Research UK (grant 20089 to MB; grant 20858 to ECo; Arthritis Research UK Experimental Arthritis Treatment Centre - grant 20022 to CP) and the William Harvey Research Foundation (WHRF grant 2011–2013 to MB); Elisa Corsiero was recipient of short-term travel fellowships from EMBO (ASTF 318-2010 and ASTF 102-2013

Use of bremsstrahlung radiation to identify hidden weak beta- sources: feasibility and possible use in radio-guided surgery

The recent interest in beta- radionuclides for radio-guided surgery derives from the feature of the beta radiation to release energy in few millimeters of tissue. Such feature can be used to locate residual tumors with a probe located in its immediate vicinity, determining the resection margins with an accuracy of millimeters. The drawback of this technique is that it does not allow to identify tumors hidden in more than few mm of tissue. Conversely, the bremsstrahlung X-rays emitted by the interaction of the beta- radiation with the nuclei of the tissue are relatively penetrating. To complement the beta- probes, we have therefore developed a detector based on cadmium telluride, an X-ray detector with a high quantum efficiency working at room temperature. We measured the secondary emission of bremsstrahlung photons in a target of Polymethylmethacrylate (PMMA) with a density similar to living tissue. The results show that this device allows to detect a 1 ml residual or lymph-node with an activity of 1 kBq hidden under a layer of 10 mm of PMMA with a 3:1 signal to noise, i.e. with a five sigma discrimination in less than 5 s

The MIPAS2D database of MIPAS/ENVISAT measurements retrieved with a multi-target 2-dimensional tomographic approach

Abstract. We present a multi-year database of atmospheric fields of the upper troposphere, stratosphere and lower mesosphere retrieved from satellite measurements adopting a 2-dimensional tomographic approach. The full mission of the Michelson Interferometer for Passive Atmospheric Sounding (MIPAS) instrument, on board the European Space Agency ENVISAT satellite, is analyzed with the Geofit Multi-Target Retrieval (GMTR) system to obtain the MIPAS2D database with atmospheric fields of pressure, temperature and volume mixing ratio of MIPAS main targets H2O, O3, HNO3, CH4, N2O, and NO2. The database covers both the MIPAS nominal observation mode measured at Full Resolution (FR) from July 2002 to March 2004 and the nominal observation mode of the new configuration, measured at Optimized Resolution (OR) and introduced in 2005. Further to the main targets, minor species N2O5, ClONO2, COF2, CFC-11, and CFC-12 for the FR mission only have been included in MIPAS2D to enhance its applicability in studies of stratospheric chemistry. The database is continuously updated with the analysis of the ongoing measurements that are planned to last until the end of 2013 and extended to other targets. The GMTR algorithm is operated on a fixed vertical grid coincident with the tangent altitudes of the FR nominal mode, spanning the altitude range from 6 to 68 km. In the horizontal domain, FR measurements are retrieved on both the observational grid and an equispaced 5 latitudinal-degrees grid which is made possible by the 2-dimensional retrieval algorithm. The analysis of MIPAS OR observations is operated on the same altitude-latitude fixed retrieval grid used for the FR measurements. This choice provides a database with a homogeneous altitude and latitude grid, over the whole globe, covering to date about seven years of measurements. The equispaced latitude grid provides a new and convenient layout for the much needed synergetic studies of data from various instrumental and modeling sources. MIPAS2D is available to the scientific community through the two web sites http://www.mbf.fci.unibo.it/mipas2d.html, and http://www.isac.cnr.it/~rss/mipas2d.ht

Asymmetry of spin wave dispersions in a hexagonal magnonic crystal

PublishedJournal ArticleWe report a study of the dispersion of spin waves in a hexagonal array of interacting ferromagnetic nanodisks for two orthogonal orientations of the in-plane applied magnetic field, i.e., either parallel or perpendicular to the direction of first neighbour disks. The experimental data were modelled using the dynamical matrix method, and the results were interpreted in terms of the effective wave vector model. We have found that spin waves propagating in the two orthogonal directions exhibit marked asymmetry concerning the existence of maxima/minima in their dispersion curves and the sign of their group velocities. © 2013 AIP Publishing LLC.This work was supported by the European Community's Seventh Framework Programme (FP7/2007-2013) under Grant Agreement Nos. 228673 (MAGNONICS) and 233552 (DYNAMAG) and by MIUR-PRIN 2010-11 Project 2010ECA8P3 “DyNanoMag.” V.V.K. also acknowledges funding received from EPSRC of the UK under project EP/E055087/1

Extreme ozone depletion in the 2010–2011 Arctic winter stratosphere as observed by MIPAS/ENVISAT using a 2-D tomographic approach

We present observations of the 2010–2011 Arctic winter stratosphere from the Michelson Interferometer for Passive Atmospheric Sounding (MIPAS) onboard ENVISAT. Limb sounding infrared measurements were taken by MIPAS during the Northern polar winter and into the subsequent spring, giving a continuous vertically resolved view of the Arctic dynamics, chemistry and polar stratospheric clouds (PSCs). We adopted a 2-D tomographic retrieval approach to account for the strong horizontal inhomogeneity of the atmosphere present under vortex conditions, self-consistently comparing 2011 to the 2-D analysis of 2003–2010. Unlike most Arctic winters, 2011 was characterized by a strong stratospheric vortex lasting until early April. Lower stratospheric temperatures persistently remained below the threshold for PSC formation, extending the PSC season up to mid-March, resulting in significant chlorine activation leading to ozone destruction. On 3 January 2011, PSCs were detected up to 30.5 ± 0.9 km altitude, representing the highest PSCs ever reported in the Arctic. Through inspection of MIPAS spectra, 83% of PSCs were identified as supercooled ternary solution (STS) or STS mixed with nitric acid trihydrate (NAT), 17% formed mostly by NAT particles, and only two cases by ice. In the lower stratosphere at potential temperature 450 K, vortex average ozone showed a daily depletion rate reaching 100 ppbv day<sup>−1</sup>. In early April at 18 km altitude, 10% of vortex measurements displayed total depletion of ozone, and vortex average values dropped to 0.6 ppmv. This corresponds to a chemical loss from early winter greater than 80%. Ozone loss was accompanied by activation of ClO, associated depletion of its reservoir ClONO<sub>2</sub>, and significant denitrification, which further delayed the recovery of ozone in spring. Once the PSC season halted, ClO was reconverted primarily into ClONO<sub>2</sub>. Compared to MIPAS observed 2003–2010 Arctic average values, the 2010–2011 vortex in late winter had 15 K lower temperatures, 40% lower HNO<sub>3</sub> and 50% lower ozone, reaching the largest ozone depletion ever observed in the Arctic. The overall picture of this Arctic winter was remarkably closer to conditions typically found in the Antarctic vortex than ever observed before