Zero sound density oscillations in Fermi-Bose mixtures

Within a mean field plus Random-Phase Approximation formalism, we investigate the collective excitations of a three component Fermi-Bose mixture of K atoms, magnetically trapped and subjected to repulsive s-wave interactions. We analyze both the single-particle excitation and the density oscillation spectra created by external multipolar fields, for varying fermion concentrations. The formalism and the numerical output are consistent with the Generalized Kohn Theorem for the whole multispecies system. The calculations give rise to fragmented density excitation spectra of the fermion sample and illustrate the role of the mutual interaction in the observed deviations of the bosonic spectra with respect to Stringari's rule.Comment: 9 pages, 6 eps figures, submitted to Phys.Rev.

Collective excitations of a trapped boson-fermion mixture across demixing

We calculate the spectrum of low-lying collective excitations in a mesoscopic cloud formed by a Bose-Einstein condensate and a spin-polarized Fermi gas as a function of the boson-fermion repulsions. The cloud is under isotropic harmonic confinement and its dynamics is treated in the collisional regime by using the equations of generalized hydrodynamics with inclusion of surface effects. For large numbers of bosons we find that, as the cloud moves towards spatial separation (demixing) with increasing boson-fermion coupling, the frequencies of a set of collective modes show a softening followed by a sharp upturn. This behavior permits a clear identification of the quantum phase transition. We propose a physical interpretation for the dynamical transition point in a confined mixture, leading to a simple analytical expression for its location.Comment: revtex4, 9 pages, 8 postscript file

Analysis of exchange terms in a projected ERPA Theory applied to the quasi-elastic (e,e') reaction

A systematic study of the influence of exchange terms in the longitudinal and transverse nuclear response to quasi-elastic (e,e') reactions is presented. The study is performed within the framework of the extended random phase approximation (ERPA), which in conjuction with a projection method permits a separation of various contributions tied to different physical processes. The calculations are performed in nuclear matter up to second order in the residual interaction for which we take a (pi+rho)-model with the addition of the Landau-Migdal g'-parameter. Exchange terms are found to be important only for the RPA-type contributions around the quasielastic peak.Comment: 29 pages, 6 figs (3 in postscript, 3 faxed on request), epsf.st

Design and Profiling of a Subcellular Targeted Optogenetic cAMP-Dependent Protein Kinase

Although the cAMP-dependent protein kinase (PKA) is ubiquitously expressed, it is sequestered at specific subcellular locations throughout the cell, thereby resulting in compartmentalized cellular signaling that triggers site-specific behavioral phenotypes. We developed a three-step engineering strategy to construct an optogenetic PKA (optoPKA) and demonstrated that, upon illumination, optoPKA migrates to specified intracellular sites. Furthermore, we designed intracellular spatially segregated reporters of PKA activity and confirmed that optoPKA phosphorylates these reporters in a light-dependent fashion. Finally, proteomics experiments reveal that light activation of optoPKA results in the phosphorylation of known endogenous PKA substrates as well as potential novel substrates

Barrier effects on the collective excitations of split Bose-Einstein condensates

We investigate the collective excitations of a single-species Bose gas at T=0 in a harmonic trap where the confinement undergoes some splitting along one spatial direction. We mostly consider onedimensional potentials consisting of two harmonic wells separated a distance 2 z_0, since they essentially contain all the barrier effects that one may visualize in the 3D situation. We find, within a hydrodynamic approximation, that regardless the dimensionality of the system, pairs of levels in the excitation spectrum, corresponding to neighbouring even and odd excitations, merge together as one increases the barrier height up to the current value of the chemical potential. The excitation spectra computed in the hydrodynamical or Thomas-Fermi limit are compared with the results of exactly solving the time-dependent Gross-Pitaevskii equation. We analyze as well the characteristics of the spatial pattern of excitations of threedimensional boson systems according to the amount of splitting of the condensate.Comment: RevTeX, 12 pages, 13 ps figure

Chembench: A Publicly Accessible, Integrated Cheminformatics Portal

The enormous increase in the amount of publicly available chemical genomics data and the growing emphasis on data sharing and open science mandates that cheminformaticians also make their models publicly available for broad use by the scientific community. Chembench is one of the first publicly accessible, integrated cheminformatics Web portals. It has been extensively used by researchers from different fields for curation, visualization, analysis, and modeling of chemogenomics data. Since its launch in 2008, Chembench has been accessed more than 1 million times by more than 5000 users from a total of 98 countries. We report on the recent updates and improvements that increase the simplicity of use, computational efficiency, accuracy, and accessibility of a broad range of tools and services for computer-assisted drug design and computational toxicology available on Chembench. Chembench remains freely accessible at https://chembench.mml.unc.ed

Finite temperature excitations of a trapped Bose-Fermi mixture

We present a detailed study of the low-lying collective excitations of a spherically trapped Bose-Fermi mixture at finite temperature in the collisionless regime. The excitation frequencies of the condensate are calculated self-consistently using the static Hartree-Fock-Bogoliubov theory within the Popov approximation. The frequency shifts and damping rates due to the coupled dynamics of the condensate, noncondensate, and degenerate Fermi gas are also taken into account by means of the random phase approximation and linear response theory. In our treatment, the dipole excitation remains close to the bare trapping frequency for all temperatures considered, and thus is consistent with the generalized Kohn theorem. We discuss in some detail the behavior of monopole and quadrupole excitations as a function of the Bose-Fermi coupling. At nonzero temperatures we find that, as the mixture moves towards spatial separation with increasing Bose-Fermi coupling, the damping rate of the monopole (quadrupole) excitation increases (decreases). This provides us a useful signature to identify the phase transition of spatial separation.Comment: 10 pages, 8 figures embedded; to be published in Phys. Rev.

Coupled-mode theory for Bose-Einstein condensates

We apply the concepts of nonlinear guided-wave optics to a Bose-Einstein condensate (BEC) trapped in an external potential. As an example, we consider a parabolic double-well potential and derive coupled-mode equations for the complex amplitudes of the BEC macroscopic collective modes. Our equations describe different regimes of the condensate dynamics, including the nonlinear Josephson effect for any separation between the wells. We demonstrate macroscopic self-trapping for both repulsive and attractive interactions, and confirm our results by numerical simulations.Comment: 4 pages, 5 figures; typos removed, figures amended; submitted to PR

First Order Static Excitation Potential: Scheme for Excitation Energies and Transition Moments

We present an approximation scheme for the calculation of the principal excitation energies and transition moments of finite many-body systems. The scheme is derived from a first order approximation to the self energy of a recently proposed extended particle-hole Green's function. A hermitian eigenvalue problem is encountered of the same size as the well-known Random Phase Approximation (RPA). We find that it yields a size consistent description of the excitation properties and removes an inconsistent treatment of the ground state correlation by the RPA. By presenting a hermitian eigenvalue problem the new scheme avoids the instabilities of the RPA and should be well suited for large scale numerical calculations. These and additional properties of the new approximation scheme are illuminated by a very simple exactly solvable model.Comment: 15 pages revtex, 1 eps figure included, corrections in Eq. (A1) and Sec. II