Size segregation and convection

The size segregation of granular materials in a vibrating container is investigated using Molecular Dynamics. We find that the rising of larger particles is accompanied by the existence of convection cells even in the case of the lowest possible frequencies. The convection can, however, also be triggered by the larger particle itself. The possibility of rising through this mechanism strongly depends on the depth of the larger particle.Comment: 7 pages, 4 figure

Metallochaperones Are Needed for Mycobacterium tuberculosis and Escherichia coli Nicotinamidase-Pyrazinamidase Activity.

Mycobacterium tuberculosis nicotinamidase-pyrazinamidase (PZAse) is a metalloenzyme that catalyzes conversion of nicotinamide-pyrazinamide to nicotinic acid-pyrazinoic acid. This study investigated whether a metallochaperone is required for optimal PZAse activity. M. tuberculosis and Escherichia coli PZAses (PZAse-MT and PZAse-EC, respectively) were inactivated by metal depletion (giving PZAse-MT-Apo and PZAse-EC-Apo). Reactivation with the E. coli metallochaperone ZnuA or Rv2059 (the M. tuberculosis analog) was measured. This was repeated following proteolytic and thermal treatment of ZnuA and Rv2059. The CDC1551 M. tuberculosis reference strain had the Rv2059 coding gene knocked out, and PZA susceptibility and the pyrazinoic acid (POA) efflux rate were measured. ZnuA (200 μM) achieved 65% PZAse-EC-Apo reactivation. Rv2059 (1 μM) and ZnuA (1 μM) achieved 69% and 34.3% PZAse-MT-Apo reactivation, respectively. Proteolytic treatment of ZnuA and Rv2059 and application of three (but not one) thermal shocks to ZnuA significantly reduced the capacity to reactivate PZAse-MT-Apo. An M. tuberculosis Rv2059 knockout strain was Wayne positive and susceptible to PZA and did not have a significantly different POA efflux rate than the reference strain, although a trend toward a lower efflux rate was observed after knockout. The metallochaperone Rv2059 restored the activity of metal-depleted PZAse in vitro Although Rv2059 is important in vitro, it seems to have a smaller effect on PZA susceptibility in vivo. It may be important to mechanisms of action and resistance to pyrazinamide in M. tuberculosis Further studies are needed for confirmation.IMPORTANCE Tuberculosis is an infectious disease caused by the bacterium Mycobacterium tuberculosis and remains one of the major causes of disease and death worldwide. Pyrazinamide is a key drug used in the treatment of tuberculosis, yet its mechanism of action is not fully understood, and testing strains of M. tuberculosis for pyrazinamide resistance is not easy with the tools that are presently available. The significance of the present research is that a metallochaperone-like protein may be crucial to pyrazinamide's mechanisms of action and of resistance. This may support the development of improved tools to detect pyrazinamide resistance, which would have significant implications for the clinical management of patients with tuberculosis: drug regimens that are appropriately tailored to the resistance profile of a patient's individual strain lead to better clinical outcomes, reduced onward transmission of infection, and reduction of the development of resistant strains that are more challenging and expensive to treat

Block to granular-like transition in dense bubble flows

We have experimentally investigated 2-dimensional dense bubble flows underneath inclined planes. Velocity profiles and velocity fluctuations have been measured. A broad second-order phase transition between two dynamical regimes is observed as a function of the tilt angle $\theta$. For low $\theta$ values, a block motion is observed. For high $\theta$ values, the velocity profile becomes curved and a shear velocity gradient appears in the flow.Comment: Europhys. Lett. (2003) in pres

Geometry dependence of the clogging transition in tilted hoppers

We report the effect of system geometry on the clogging of granular material flowing out of flat-bottomed hoppers with variable aperture size D. For such systems, there exists a critical aperture size Dc at which there is a divergence in the time for a flow to clog. To better understand the origins of Dc, we perturb the system by tilting the hopper an angle Q and mapping out a clogging phase diagram as a function of Q and D. The clogging transition demarcates the boundary between the freely-flowing (large D, small Q) and clogging (small D, large Q) regimes. We investigate how the system geometry affects Dc by mapping out this phase diagram for hoppers with either a circular hole or a rectangular narrow slit. Additionally, we vary the grain shape, investigating smooth spheres (glass beads), compact angular grains (beach sand), disk-like grains (lentils), and rod-like grains (rice). We find that the value of Dc grows with increasing Q, diverging at pi-Qr where Qr is the angle of repose. For circular apertures, the shape of the clogging transition is the same for all grain types. However, this is not the case for the narrow slit apertures, where the rate of growth of the critical hole size with tilt angle depends on the material

Statistical characterization of the forces on spheres in an upflow of air

The dynamics of a sphere fluidized in a nearly-levitating upflow of air were previously found to be identical to those of a Brownian particle in a two-dimensional harmonic trap, consistent with a Langevin equation [Ojha {\it et al.}, Nature {\bf 427}, 521 (2004)]. The random forcing, the drag, and the trapping potential represent different aspects of the interaction of the sphere with the air flow. In this paper we vary the experimental conditions for a single sphere, and report on how the force terms in the Langevin equation scale with air flow speed, sphere radius, sphere density, and system size. We also report on the effective interaction potential between two spheres in an upflow of air.Comment: 7 pages, experimen

Intense reynolds-stress events in turbulent ducts

The aim of the present work is to investigate the role of intense Reynolds shear-stress events in the generation of the secondary flow in turbulent ducts. We consider the connected regions of flow where the product of the instantaneous fluctuations of two velocity components is higher than a threshold based on the long-time turbulence statistics, in the spirit of the three-dimensional quadrant analysis proposed by Lozano-Durán et al. (J. Fluid Mech., vol. 694, 2012, pp. 100–130). We examine both the geometrical properties of these structures and their contribution to the mean in-plane velocity components, and we perfom a comparison with turbulent channel flow at similar Reynolds number. The contribution to a certain mean quantity is defined as the ensemble average over the detected coherent structures, weighted with their own occupied volume fraction. In the core region of the duct, the contribution of intense events to the wall-normal component of the mean velocity is in very good agreement with that in the channel, despite the presence of the secondary flow in the former. Additionally, the shapes of the three-dimensional objects do not differ significantly in both flows. In the corner region of the duct, the proximity of the walls affects both the geometrical properties of the coherent structures and the contribution to the mean component of the vertical velocity. However, such contribution is less relevant than that of the complementary portion of the flow not included in such objects. Our results show that strong Reynolds shear-stress events are affected by the presence of a corner but, despite the important role of these structures in the dynamics of wall-bounded turbulent flows, their contribution to the secondary flow is relatively low, both in the core and in the corner

Coherent structures in turbulent boundary layers over an airfoil

This preliminary study is concerned with the identification of three-dimensional coherent structures, defined as intense Reynolds-stress events, in the turbulent boundary layer developing over the suction side of a NACA4412 airfoil at a Reynolds number based on the chord lenght and the incoming velocity of Rec = 200, 000. The scientific interest for such flows originates from the non-uniform adverse pressure gradient that affects the boundary-layer development. Firstly, we assess different methods to identify the turbulent-non-turbulent interface, in order to exclude the irrotational region from the analysis. Secondly, we evaluate the contribution of the considered coherent structures to the enhanced wall-normal velocity, characteristic of adverse pressure gradients. Our results show that it is necessary to limit the detection of coherent structures to the turbulent region of the domain, and that the structures reveal qualitative differences between the contributions of intense events to the wall-normal velocity in adverse-pressure-gradient and zero-pressure-gradient turbulent boundary layers

Contribution of Reynolds-stress structures to the secondary flow in turbulent ducts

The present work is aimed at evaluating the contribution to the secondary flow in duct flow with square and rectangular cross section from three-dimensional coherent structures, defined as intense Reynolds-stress events. The contribution to a certain mean quantity is defined as the ensemble average over the detected coherent structures, weighted with their own occupied volume fraction. Our analysis unveils that the contribution to the cross-stream components of the mean velocity is either very similar to the same contribution in channel flow, or almost negligible in respect to the contribution from the portion of the domain not occupied by coherent structures. These results suggest that the most intense events are not directly responsible for the secondary flow