Heuristic Refinement Method for the Derivation of Protein Solution Structures: Validation on Cytochrome B562

A method is described for determining the family of protein structures compatible with solution data obtained primarily from nuclear magnetic resonance (NMR) spectroscopy. Starting with all possible conformations, the method systematically excludes conformations until the remaining structures are only those compatible with the data. The apparent computational intractability of this approach is reduced by assembling the protein in pieces, by considering the protein at several levels of abstraction, by utilizing constraint satisfaction methods to consider only a few atoms at a time, and by utilizing artificial intelligence methods of heuristic control to decide which actions will exclude the most conformations. Example results are presented for simulated NMR data from the known crystal structure of cytochrome b562 (103 residues). For 10 sample backbones an average root-mean-square deviation from the crystal of 4.1 A was found for all alpha-carbon atoms and 2.8 A for helix alpha-carbons alone. The 10 backbones define the family of all structures compatible with the data and provide nearly correct starting structures for adjustment by any of the current structure determination methods

Modeling and performance of a 100-element pHEMT grid amplifier

A 100-element hybrid grid amplifier has been fabricated, The active devices in the grid are custom-made pseudomorphic high electron mobility transistor (pHEMT) differential-pair chips. We present a model for gain analysis and compare measurements with theory. The grid includes stabilizing resistors in the gate. Measurements show the grid has a peak gain of 10 db when tuned for 10 GHz and a gain of 12 dB when tuned for 9 GHz. The maximum 3-dB bandwidth is 15% at 9 GHz. The minimum noise figure is 3 dB. The maximum saturated output power is 3.7 W, with a peak power-added efficiency of 12%. These results area significant improvement over previous grid amplifiers based on heterojunction bipolar transistors (HBT's)

Pro-inflammatory flagellin proteins of prevalent motile commensal bacteria are variably abundant in the intestinal microbiome of elderly humans

Peer reviewedPublisher PD

Architectural Implementation of NASA Space Telecommunications Radio System Specification

This software demonstrates a working implementation of the NASA STRS (Space Telecommunications Radio System) architecture specification. This is a developing specification of software architecture and required interfaces to provide commonality among future NASA and commercial software-defined radios for space, and allow for easier mixing of software and hardware from different vendors. It provides required functions, and supports interaction with STRS-compliant simple test plug-ins ("waveforms"). All of it is programmed in "plain C," except where necessary to interact with C++ plug-ins. It offers a small footprint, suitable for use in JPL radio hardware. Future NASA work is expected to develop into fully capable software-defined radios for use on the space station, other space vehicles, and interplanetary probes

The Size of the Radio-Emitting Region in Low-luminosity Active Galactic Nuclei

We have used the VLA to study radio variability among a sample of 18 low luminosity active galactic nuclei (LLAGNs), on time scales of a few hours to 10 days. The goal was to measure or limit the sizes of the LLAGN radio-emitting regions, in order to use the size measurements as input to models of the radio emission mechanisms in LLAGNs. We detect variability on typical time scales of a few days, at a confidence level of 99%, in half of the target galaxies. Either variability that is intrinsic to the radio emitting regions, or that is caused by scintillation in the Galactic interstellar medium, is consistent with the data. For either interpretation, the brightness temperature of the emission is below the inverse-Compton limit for all of our LLAGNs, and has a mean value of about 1E10 K. The variability measurements plus VLBI upper limits imply that the typical angular size of the LLAGN radio cores at 8.5 GHz is 0.2 milliarcseconds, plus or minus a factor of two. The ~ 1E10 K brightness temperature strongly suggests that a population of high-energy nonthermal electrons must be present, in addition to a hypothesized thermal population in an accretion flow, in order to produce the observed radio emission.Comment: 61 pages, 17 figures, 10 tables. Accepted for publication in the Astrophysical Journa

The Determination of Pertechnetate and Non-Pertechnetate Species in Hanford Tanks - Phase 1

An analytical method is required to distinguish between the pertechnetate and non-pertechnetate forms of technetium; currently, the methods available only report the total technetium present in a sample. The overall objective of this effort is to develop a method for routinely analyzing Hanford tank waste for technetium in the pertechnetate and the non-pertechnetate forms. A phased approach will be deployed to accomplish this objective: Phase I Comparison of existing technetium analysis methods with modification; Phase II Demonstration of modified methods using non-pertechnetate spiked simulants; and, Phase III Demonstration of chosen method on Hanford tank sample containing non-pertechnetate. This report describes the Phase I work, providing a comparison of Aliquat 336 and TEVA(R)1 in the removal of pertechnetate and discussing the subsequent analysis for technetium in both alkaline and acidic environments without oxidation. The effort was executed under LAB-PLN-13-00004, The Determination of Pertechnetate and Non-Pertechnetate Species in Hanford Tanks Phase I

Comments on the Equity, Efficiency, Incidence and Politics of Impact Fee Methodologies

Development impact fee systems are a controversial topic among developers and planners. This article proposes that the use of locationally-sensitive impact fee methodologies can have positive effects on the cost of development and the price of the final product. The authors caution local officials against jumping on the "development fee bandwagon," and using fees to raise new revenues rather than as a regulatory measure to meet growth needs

International Space Station Alpha user payload operations concept

International Space Station Alpha (ISSA) will accommodate a variety of user payloads investigating diverse scientific and technology disciplines on behalf of five international partners: Canada, Europe, Japan, Russia, and the United States. A combination of crew, automated systems, and ground operations teams will control payload operations that require complementary on-board and ground systems. This paper presents the current planning for the ISSA U.S. user payload operations concept and the functional architecture supporting the concept. It describes various NASA payload operations facilities, their interfaces, user facility flight support, the payload planning system, the onboard and ground data management system, and payload operations crew and ground personnel training. This paper summarizes the payload operations infrastructure and architecture developed at the Marshall Space Flight Center (MSFC) to prepare and conduct ISSA on-orbit payload operations from the Payload Operations Integration Center (POIC), and from various user operations locations. The authors pay particular attention to user data management, which includes interfaces with both the onboard data management system and the ground data system. Discussion covers the functional disciplines that define and support POIC payload operations: Planning, Operations Control, Data Management, and Training. The paper describes potential interfaces between users and the POIC disciplines, from the U.S. user perspective

Respiratory syncytial virus infection reduces lung inflammation and fibrosis in mice exposed to vanadium pentoxide

<p>Abstract</p> <p>Background</p> <p>Vanadium pentoxide (V₂O₅) exposure is a cause of occupational bronchitis and airway fibrosis. Respiratory syncytial virus (RSV) is a ubiquitous pathogen that causes airway inflammation. It is unknown whether individuals with pre-existing respiratory viral infection are susceptible to V₂O₅-induced bronchitis. We hypothesized that respiratory viral infection will exacerbate vanadium-induced lung fibrosis.</p> <p>Methods</p> <p>In this study we investigated the effect of RSV pre- or post-exposure to V₂O₅in male AKR mice. Mice were pre-exposed by intranasal aspiration to RSV or media vehicle prior to intranasal aspiration of V₂O₅or saline vehicle at day 1 or day 7. A parallel group of mice were treated first with V₂O₅or saline vehicle at day 1 and day 7 then post-exposed to RSV or media vehicle at day 8.</p> <p>Results</p> <p>V₂O₅-induced airway inflammation and fibrosis were decreased by RSV pre- or post-exposure. Real time quantitative RT-PCR showed that V₂O₅significantly increased lung mRNAs encoding pro-fibrogenic growth factors (TGF-β1, CTGF, PDGF-C) and collagen (Col1A2), but also increased mRNAs encoding anti-fibrogenic type I interferons (IFN-α, -β) and IFN-inducible chemokines (CXCL9 and CXCL10). RSV pre- or post-exposure caused a significantly reduced mRNAs of pro-fibrogenic growth factors and collagen, yet reduced RNA levels of anti-fibrogenic interferons and CXC chemokines.</p> <p>Conclusions</p> <p>Collectively these data suggest that RSV infection reduces the severity of V₂O₅-induced fibrosis by suppressing growth factors and collagen genes. However, RSV suppression of V₂O₅-induced IFNs and IFN-inducible chemokines suggests that viral infection also suppresses the innate immune response that normally serves to resolve V₂O₅-induced fibrosis.</p

Nebulized heparin is associated with fewer days of mechanical ventilation in critically ill patients: a randomized controlled trial

INTRODUCTION: Prolonged mechanical ventilation has the potential to aggravate or initiate pulmonary inflammation and cause lung damage through fibrin deposition. Heparin may reduce pulmonary inflammation and fibrin deposition. We therefore assessed whether nebulised heparin improved lung function in patients expected to require prolonged mechanical ventilation. METHODS: Fifty patients expected to require mechanical ventilation for more than 48 hours were enrolled in a double-blind randomised placebo-controlled trial of nebulised heparin (25,000 U) or placebo (normal saline) 4 or 6 hourly, depending on patient height. The study drug was continued while the patient remained ventilated to a maximum of 14 days from randomisation. RESULTS: Nebulised heparin was not associated with a significant improvement in the primary end-point, the average daily partial pressure of oxygen to inspired fraction of oxygen ratio while mechanically ventilated, but was associated with improvement in the secondary end-point ventilator free days amongst survivors at day 28 (22.6 4.0 versus 18.0 7.1, treatment difference 4.6 days, 95% CI 0.9 to 8.3, P = 0.02). Heparin administration was not associated with any increase in adverse events. CONCLUSIONS: Nebulised heparin was associated with fewer days of mechanical ventilation in critically ill patients expected to require prolonged mechanical ventilation. Further trials are required to confirm these findings. Trial registration: The Australian Clinical Trials Registry (ACTR-12608000121369