Shifts in size, genetic structure and activity of the soil denitrifier community by nematode grazing

International audienceBacterial-feeding nematodes represent an important driver of the soil microbial activity and diversity. This study aimed at characterizing the impact of nematode grazing on a model functional bacterial guild involved in N-cycling, the denitrifiers. Bacterial-feeding nematodes (Cephalobus pseudoparvus) were inoculated into soil microcosms whose indigenous nematofauna had previously been removed. The size, genetic structure and activity of the soil denitrifier community were characterized 15 and 45 days after nematodes inoculation using quantitative PCR of the nirK, nirS and nosZ denitrification genes, fingerprinting of the nirK and nirS genes and denitrification enzyme activity measurements, respectively. A significant impact of C. pseudoparvus was observed on genetic structure of the nirK community, mainly due to shifts in the relative abundance of the dominant populations, but not on the nirS community. The grazing pressure also tended to decrease the density of all denitrification genes as well as that of 16S rRNA genes. Despite being non-significant, the extent of this decline in gene copy numbers ranged between 60 and 80% of the control microcosm genes densities. Finally, compared to non-inoculated microcosms, denitrification activity significantly decreased by 8% in response to the nematodes inoculation. The herewith data showed that predation by a single species of bacterial-feeding nematode can affect the soil denitrifier communit

Associations of soil type and previous crop with plant-feeding nematode communities in plantain agrosystems

International audienceUnderstanding the influence of soil properties and cultural practices on the communities of plant-feeding nematodes (PFNs) in agrosystems is a prerequisite for cost-efficient and environment-friendly pest control. Although plantain is a staple food crop in the Caribbean, the relationships between PFN communities and environmental factors are poorly understood in plantain agrosystems. In this study, which was conducted in Martinique (French West Indies), we quantified the PFNs in 301 root samples taken from 53 plantain fields that differed in climate, edaphic conditions, and cultural practices. The physico-chemical properties were also determined for the soil in each field. Coinertia analysis (CI) and General Linear Mixed Models (GLMMS) were used to investigate the relationships between the PFN communities, soil properties, and cultural practices. Four nematode taxa were found in plantain roots: Radopholus similis, Pratylenchus coffeae, Helicotylenchus multicinctus, and Meloidogyne spp. The lesion nematode P. coffeae was the most prominent PFN species, followed by the burrowing nematode R. similis, root-knot nematodes Meloidogyne spp., and the spiral nematode H. multicinctus. P. coffeae was significantly more abundant in ferralsols and nitisols (which have a low organic matter content and a high exchangeable cation content) than in andosols (which have a high organic matter content). Nematode abundances were apparently affected by the previous crops e.g., P. coffeae was slightly more abundant in fields where tuber plants such as sweet potato, yam, or dasheen were the previous crop; R. similis was particularly abundant in fields where banana or plantain was the previous crop; and Meloidogyne spp. were abundant in fields where a market garden was the previous crop. The results of this study will be useful for the design of PFN control methods in plantain

Earthworms and Plant Residues Modify Nematodes in Tropical Cropping Soils (Madagascar): A Mesocosm Experiment

Free-living nematodes present several characteristics that have led to their use as bioindicators of soil quality. Analyzing the structure of nematofauna is a pertinent way to understand soil biological processes. Earthworms play an important role in soil biological functioning and organic matter dynamics. Their effects on soil nematofauna have seldom been studied. We studied the effect of the tropical endogeic earthworm, Pontoscolex corethrurus, on nematode community structure in a 5-month field mesocosm experiment conducted in Madagascar. Ten different treatments with or without earthworms and with or without organic residues (rice, soybean) were compared. Organic residues were applied on the soil surface or mixed with the soil. The abundance of nematodes (bacterial and fungal feeders) was higher in presence of P. corethrurus than in their absence. The type of plant residues as well as their localisation had significant effects on the abundance and composition of soil nematodes. The analysis of nematode community structure showed that earthworm activity led to an overall activation of the microbial compartment without specific stimulation of the bacterial or fungal compartment