Performance of GEDI space-borne LiDAR for quantifying structural variation in the temperate forests of South-Eastern Australia

Monitoring forest structural properties is critical for a range of applications because structure is key to understanding and quantifying forest biophysical functioning, including stand dynamics, evapotranspiration, habitat, and recovery from disturbances. Monitoring of forest structural properties at desirable frequencies and cost globally is enabled by space-borne LiDAR missions such as the global ecosystem dynamics investigation (GEDI) mission. This study assessed the accuracy of GEDI estimates for canopy height, total plant area index (PAI), and vertical profile of plant area volume density (PAVD) and elevation over a gradient of canopy height and terrain slope, compared to estimates derived from airborne laser scanning (ALS) across two forest age-classes in the Central Highlands region of south-eastern Australia. ALS was used as a reference dataset for validation of GEDI (Version 2) dataset. Canopy height and total PAI analyses were carried out at the landscape level to understand the influence of beam-type, height of the canopy, and terrain slope. An assessment of GEDI’s terrain elevation accuracy was also carried out at the landscape level. The PAVD profile evaluation was carried out using footprints grouped into two forest age-classes, based on the areas of mountain ash (Eucalyptus regnans) forest burnt in the Central Highlands during the 1939 and 2009 wildfires. The results indicate that although GEDI is found to significantly under-estimate the total PAI and slightly over-estimate the canopy height, the GEDI estimates of canopy height and the vertical PAVD profile (above 25 m) show a good level of accuracy. Both beam-types had comparable accuracies, with increasing slope having a slightly detrimental effect on accuracy. The elevation accuracy of GEDI found the RMSE to be 10.58 m and bias to be 1.28 m, with an R2 of 1.00. The results showed GEDI is suitable for canopy densities and height in complex forests of south-eastern Australia

Performance of GEDI Space-Borne LiDAR for Quantifying Structural Variation in the Temperate Forests of South-Eastern Australia

Monitoring forest structural properties is critical for a range of applications because structure is key to understanding and quantifying forest biophysical functioning, including stand dynamics, evapotranspiration, habitat, and recovery from disturbances. Monitoring of forest structural properties at desirable frequencies and cost globally is enabled by space-borne LiDAR missions such as the global ecosystem dynamics investigation (GEDI) mission. This study assessed the accuracy of GEDI estimates for canopy height, total plant area index (PAI), and vertical profile of plant area volume density (PAVD) and elevation over a gradient of canopy height and terrain slope, compared to estimates derived from airborne laser scanning (ALS) across two forest age-classes in the Central Highlands region of south-eastern Australia. ALS was used as a reference dataset for validation of GEDI (Version 2) dataset. Canopy height and total PAI analyses were carried out at the landscape level to understand the influence of beam-type, height of the canopy, and terrain slope. An assessment of GEDI’s terrain elevation accuracy was also carried out at the landscape level. The PAVD profile evaluation was carried out using footprints grouped into two forest age-classes, based on the areas of mountain ash (Eucalyptus regnans) forest burnt in the Central Highlands during the 1939 and 2009 wildfires. The results indicate that although GEDI is found to significantly under-estimate the total PAI and slightly over-estimate the canopy height, the GEDI estimates of canopy height and the vertical PAVD profile (above 25 m) show a good level of accuracy. Both beam-types had comparable accuracies, with increasing slope having a slightly detrimental effect on accuracy. The elevation accuracy of GEDI found the RMSE to be 10.58 m and bias to be 1.28 m, with an R2 of 1.00. The results showed GEDI is suitable for canopy densities and height in complex forests of south-eastern Australia

Genome sequence, comparative analysis and haplotype structure of the domestic dog.

Here we report a high-quality draft genome sequence of the domestic dog (Canis familiaris), together with a dense map of single nucleotide polymorphisms (SNPs) across breeds. The dog is of particular interest because it provides important evolutionary information and because existing breeds show great phenotypic diversity for morphological, physiological and behavioural traits. We use sequence comparison with the primate and rodent lineages to shed light on the structure and evolution of genomes and genes. Notably, the majority of the most highly conserved non-coding sequences in mammalian genomes are clustered near a small subset of genes with important roles in development. Analysis of SNPs reveals long-range haplotypes across the entire dog genome, and defines the nature of genetic diversity within and across breeds. The current SNP map now makes it possible for genome-wide association studies to identify genes responsible for diseases and traits, with important consequences for human and companion animal health

Evolution of genes and genomes on the Drosophila phylogeny.

Comparative analysis of multiple genomes in a phylogenetic framework dramatically improves the precision and sensitivity of evolutionary inference, producing more robust results than single-genome analyses can provide. The genomes of 12 Drosophila species, ten of which are presented here for the first time (sechellia, simulans, yakuba, erecta, ananassae, persimilis, willistoni, mojavensis, virilis and grimshawi), illustrate how rates and patterns of sequence divergence across taxa can illuminate evolutionary processes on a genomic scale. These genome sequences augment the formidable genetic tools that have made Drosophila melanogaster a pre-eminent model for animal genetics, and will further catalyse fundamental research on mechanisms of development, cell biology, genetics, disease, neurobiology, behaviour, physiology and evolution. Despite remarkable similarities among these Drosophila species, we identified many putatively non-neutral changes in protein-coding genes, non-coding RNA genes, and cis-regulatory regions. These may prove to underlie differences in the ecology and behaviour of these diverse species

Evolution of genes and genomes on the Drosophila phylogeny

Comparative analysis of multiple genomes in a phylogenetic framework dramatically improves the precision and sensitivity of evolutionary inference, producing more robust results than single-genome analyses can provide. The genomes of 12 Drosophila species, ten of which are presented here for the first time (sechellia, simulans, yakuba, erecta, ananassae, persimilis, willistoni, mojavensis, virilis and grimshawi), illustrate how rates and patterns of sequence divergence across taxa can illuminate evolutionary processes on a genomic scale. These genome sequences augment the formidable genetic tools that have made Drosophila melanogaster a pre-eminent model for animal genetics, and will further catalyse fundamental research on mechanisms of development, cell biology, genetics, disease, neurobiology, behaviour, physiology and evolution. Despite remarkable similarities among these Drosophila species, we identified many putatively non-neutral changes in protein-coding genes, non-coding RNA genes, and cis-regulatory regions. These may prove to underlie differences in the ecology and behaviour of these diverse species

Evolution of genes and genomes on the Drosophila phylogeny

Affiliations des auteurs : cf page 216 de l'articleInternational audienceComparative analysis of multiple genomes in a phylogenetic framework dramatically improves the precision and sensitivity of evolutionary inference, producing more robust results than single-genome analyses can provide. The genomes of 12 Drosophila species, ten of which are presented here for the first time (sechellia, simulans, yakuba, erecta, ananassae, persimilis, willistoni, mojavensis, virilis and grimshawi), illustrate how rates and patterns of sequence divergence across taxa can illuminate evolutionary processes on a genomic scale. These genome sequences augment the formidable genetic tools that have made Drosophila melanogaster a pre-eminent model for animal genetics, and will further catalyse fundamental research on mechanisms of development, cell biology, genetics, disease, neurobiology, behaviour, physiology and evolution. Despite remarkable similarities among these Drosophila species, we identified many putatively non-neutral changes in protein-coding genes, non-coding RNA genes, and cis-regulatory regions. These may prove to underlie differences in the ecology and behaviour of these diverse species