An Intuitive Graphical Query Interface for Protégé Knowledge Bases

Emily is a graphical query engine for Protégé knowledge bases that was developed by the Structural Informatics Group (SIG) at the University of Washington. Currently this application is adapted for a specific knowledge model, the Foundational Model of Anatomy (FMA) [1], but it could readily be generalized for use with other Protégé knowledge bases. In developing the Emily query interface, our intent was to provide a tool that was simple and intuitive to use, like the Queries tab provided with Protégé, but with improved information retrieval capabilities. Although some more advanced query mechanisms exist, currently they are too complicated for non-expert end users. The Algernon tab [2], for example, provides extensive Protégé query capabilities but requires users to learn a query scripting language. We sought to develop a query interface that was intuitive enough for end users to operate, with only minor instruction, yet was powerful enough to gather interesting information from a knowledge base that was not easily attained by browsing alone

Effects of Subsonic Aircraft on Aerosols and Cloudiness in the Upper Troposphere and Lower Stratosphere

This work was accomplished primarily by Allison G. Wozniak, a graduate research assistant who has completed the Master of Science in Meteorology program at the South Dakota School of Mines and Technology. Ms. Wozniak was guided and assisted in her work by L. R. Johnson and the principal investigator. Invaluable guidance was supplied by Dr. James Holdeman, NASA Lewis, the manager of the Global Atmospheric Sampling Program (GASP). Dr. Gregory Nastrom, St. Cloud (Minnesota) State University, who has used the GASP data set to provide unique views of the distribution of ozone, clouds, and atmospheric waves and turbulence, in the upper troposphere/lower stratosphere region, was also extremely helpful. Finally, Dr. Terry Deshler, University of Wyoming, supplied observations from the university's upper atmospheric monitoring program for comparison to GASP data

A Relation-Centric Query Engine for the Foundational Model of Anatomy

The Foundational Model of Anatomy (FMA), a detailed representation of the structural organization of the human body, was constructed to support the development of software applications requiring knowledge of anatomy. The FMA's focus on the structural relationships between anatomical entities distinguishes it from other current anatomical knowledge sources. We developed Emily, a query engine for the FMA, to enable users to explore the richness and depth of these relationships. Preliminary analysis suggests that Emily is capable of correctly processing real world anatomical queries provided they have been translated into a constrained form suitable for processing by the query engine

The design of four hypersonic reconnaissance aircraft

Four different hypersonic reconnaissance aircraft were designed by separate student teams. These aircraft were designed to provide the U.S. with a system to acquire aerial tactical reconnaissance when satellite reconnaissance proved unobtainable or ineffective. The design requirements given for this project stated that these aircraft must carry a 7500 lb, 250 cu ft payload of electronic and photographic intelligence gathering equipment over a target area at speeds between Mach 4-7 and at altitudes above 80,000 ft. Two of the aircraft were required to be manned by a crew of two and have a range of 12,000 nmi. One of these was to use airborne refueling to complete its mission while the other was not to use any refueling. The other two aircraft were required to be unmanned with a range of 6,000 nmi. One of these was to take off from another aircraft. The final details of all four aircraft designs along with an overview of the design process is provided

Nuclear Propelled Vessels and Neutrino Oscillation Experiments

We study the effect of naval nuclear reactors on the study of neutrino oscillations. We find that the presence of naval reactors at unknown locations and times may limit the accuracy of future very long baseline reactor-based neutrino oscillation experiments. At the same time we argue that a nuclear powered surface ship such as a large Russian ice-breaker may provide an ideal source for precision experiments. While the relatively low reactor power would in this case require a larger detector, the source could be conveniently located at essentially any distance from a detector built at an underground location near a shore in a region of the world far away from other nuclear installations. The variable baseline would allow for a precise measurement of backgrounds and greatly reduced systematics from reactor flux and detector efficiency. In addition, once the oscillation measurement is completed, the detector could perform geological neutrino and astrophysical measurements with minimal reactor background.Comment: 4 pages, 2 figure

Information flow and optimization in transcriptional control

In the simplest view of transcriptional regulation, the expression of a gene is turned on or off by changes in the concentration of a transcription factor (TF). We use recent data on noise levels in gene expression to show that it should be possible to transmit much more than just one regulatory bit. Realizing this optimal information capacity would require that the dynamic range of TF concentrations used by the cell, the input/output relation of the regulatory module, and the noise levels of binding and transcription satisfy certain matching relations. This parameter-free prediction is in good agreement with recent experiments on the Bicoid/Hunchback system in the early Drosophila embryo, and this system achieves ~90% of its theoretical maximum information transmission.Comment: 5 pages, 4 figure

Testing the inverted neutrino mass ordering with neutrinoless double-β decay

We quantify the extent to which future experiments will test the existence of neutrinoless double-beta decay mediated by light neutrinos with inverted-ordered masses. While it remains difficult to compare measurements performed with different isotopes, we find that future searches will fully test the inverted ordering scenario, as a global, multi-isotope endeavor. They will also test other possible mechanisms driving the decay, including a large uncharted region of the allowed parameter space assuming that neutrino masses follow the normal ordering

Toward the discovery of matter creation with neutrinoless ββ decay

The discovery of neutrinoless ⁢ decay could soon be within reach. This hypothetical ultrarare nuclear decay offers a privileged portal to physics beyond the standard model of particle physics. Its observation would constitute the discovery of a matter-creating process, corroborating leading theories of why the Universe contains more matter than antimatter, and how forces unify at high energy scales. It would also prove that neutrinos and antineutrinos are not two distinct particles but can transform into each other, with their mass described by a unique mechanism conceived by Majorana. The recognition that neutrinos are not massless necessitates an explanation and has boosted interest in neutrinoless ⁢ decay. The field stands now at a turning point. A new round of experiments is currently being prepared for the next decade to cover an important region of parameter space. In parallel, advances in nuclear theory are laying the groundwork to connect the nuclear decay with the underlying new physics. Meanwhile, the particle theory landscape continues to find new motivations for neutrinos to be their own antiparticle. This review brings together the experimental, nuclear theory, and particle theory aspects connected to neutrinoless ⁢ decay to explore the path toward, and beyond, its discovery

A Generic Surface Sampler for Monte Carlo Simulations

We present an implementation of a Monte Carlo algorithm that generates points randomly and uniformly on a set of arbitrary surfaces. The algorithm is completely general and only requires the geometry modeling software to provide the intersection points of an arbitrary line with the surface being sampled. We demonstrate the algorithm using the Geant4 Monte Carlo simulation toolkit. The efficiency of the sampling algorithm is discussed, along with various options in the implementation and example applications

The Paluxy River Footprints Revisited

Field research by the authors at various times between 1982 and 1989 helped expose some of the elongate impressions imbedded in alleged 108 million year old Cretaceous ledges along the Paluxy River near Glen Rose, Texas. These human-like footprints were exposed in the same horizon with theropod dinosaur ichnites, as have prints in river itself over the decades, as reported by the local residents (I, 2). In order to thoroughly document such significant discoveries, several excavations were initiated since the 1986 ICC proceedings in the search for pristine ichnites. The results of these excavations plus the observable results of many previous excavations and the aspect ratio studies of many of the footprints strongly support the hypothesis that humans and dinosaurs coexisted. Furthermore, when radiocarbon dating results are combined with the paleoanthropological studies, the most logical conclusions are that: dinosaur extinction 65 million years ago is a myth; the long ages for sedimentary rock strata formation are non-existent; dinosaur extinction could have been caused by a major worldwide catastrophe happening perhaps only thousands of years ago