Virus-like particle distribution and abundance in sediments and overlying waters along eutrophication gradients in two subtropical estuaries

Viruses are recognized as ubiquitous components of marine ecosystems; however, there has been limited study of viral abundance and its ecological role in sediments. Viral abundance was determined in both the water column and sediments of a eutrophic (Brisbane River/Moreton Bay; 27°25′S, 153°5′E) and oligotrophic (Noosa River; 26°15′S, 153°0′E) estuary in subtropical Queensland, Australia. Viruses, bacteria, and microalgae from both water column and extracted sediment samples were enumerated using SYBR Green I staining and epifluorescence microscopy. Sediment viral abundance ranged from 10 to 10 particles cm of sediment, bacterial abundance ranged from 10 to 10 cells cm of sediment, and microalgal abundance ranged from 10 to 10 cells cm sediment. Pelagic abundances for all microorganisms were 10-1,000-fold lower than sediment abundances. Correlations between viral abundances and suspended solids suggest that viruses sorbed to suspended material in the water column may settle out and contribute to the benthic viral population. Virus production was measured by a time course increase of viral abundance in seawater using a dilution technique. Virus production was highest in eutrophic waters of the Brisbane River, and addition of inorganic nutrients (NO + NH + PO + SiO) stimulated viral production rates at all stations by 14-52% above ambient, suggesting that inorganic nutrient availability may play a key role in aquatic viral abundance

An Eye-Opening Approach to Developing and Communicating Integrated Environmental Assessments

Communication among managers, the public, and scientists is the key to successful ecosystem management; however, the varied perspectives and interests of these groups can make such communication difficult. One way to achieve effective communication is to develop a common knowledge base by combining syntheses of key scientific results with information-rich visual elements. Within a management landscape, integrated environmental assessments provide a useful framework for evaluating resources and directing management efforts. The integrated assessment process involves (1) initial investigation, (2) development of a conceptual framework, (3) data navigation, (4) environmental report cards, and (5) science communication. Each step requires the synthesis and visualization of information on the status and trends connected with multiple natural resources. We provide a case study, using examples from selected National Park Service sites in the mid-Atlantic region of the United States. Visual elements (conceptual diagrams, maps, graphs, tables, and photographs) were used to facilitate comparative assessments and to provide a more visual, or eye-opening , approach to effective environmental decision making

Accurately measuring the abundance of benthic microalgae in spatially variable habitats

Although many studies measure the abundance of benthic microalgae (BMA), at the meters squared scale, comparing these studies is difficult due to the variety of sampling, extraction, and analysis techniques. This difficulty is exacerbated by the fact that BMA abundance has high spatial and temporal variability, at all spatial scales. A suitable standard sampling regimen would reduce variation in estimates due to different sample collection and processing greatly facilitating comparisons between studies. This study examined the effect of varying the volume of extraction solvent, sampling core diameter, and sample replication on BMA biomass estimates. Key findings, applicable to all spatial scales, to accurately determine biomass were the use of a minimum sediment to extraction solvent ratio of 1:2 and use of a sampling core diameter of 19 mm. Across a wide range of sediment types, at the meters squared scale and using spectrophotometric techniques, a minimum replication number of 8 was found to be appropriate. We report the significant effect coring depth and units of expression have on BMA biomass estimates across a range of sediment types, highlighting the potential pitfalls when comparing studies

Parallel transport in an entangled ring

This paper defines a notion of parallel transport in a lattice of quantum particles, such that the transformation associated with each link of the lattice is determined by the quantum state of the two particles joined by that link. We focus particularly on a one-dimensional lattice--a ring--of entangled rebits, which are binary quantum objects confined to a real state space. We consider states of the ring that maximize the correlation between nearest neighbors, and show that some correlation must be sacrificed in order to have non-trivial parallel transport around the ring. An analogy is made with lattice gauge theory, in which non-trivial parallel transport around closed loops is associated with a reduction in the probability of the field configuration. We discuss the possibility of extending our result to qubits and to higher dimensional lattices.Comment: 31 pages, no figures; v2 includes a new example of a qubit rin

Long-term Annual Aerial Surveys of Submersed Aquatic Vegetation (SAV) Support Science, Management, and Restoration

Aerial surveys of coastal habitats can uniquely inform the science and management of shallow, coastal zones, and when repeated annually, they reveal changes that are otherwise difficult to assess from ground-based surveys. This paper reviews the utility of a long-term (1984–present) annual aerial monitoring program for submersed aquatic vegetation (SAV) in Chesapeake Bay, its tidal tributaries, and nearby Atlantic coastal bays, USA. We present a series of applications that highlight the program’s importance in assessing anthropogenic impacts, gauging water quality status and trends, establishing and evaluating restoration goals, and understanding the impact of commercial fishing practices on benthic habitats. These examples demonstrate how periodically quantifying coverage of this important foundational habitat answers basic research questions locally, as well as globally, and provides essential information to resource managers. New technologies are enabling more frequent and accurate aerial surveys at greater spatial resolution and lower cost. These advances will support efforts to extend the applications described here to similar issues in other areas

Improving management of a mid-Atlantic coastal barrier island through assessment of habitat condition

AbstractTo achieve desired environmental outcomes, environmental condition and trends need to be rigorously measured and communicated to resource managers, scientists, and a broader general audience. However, there is often a disconnect between responsive ecosystem monitoring and decision making for strategic long-term management. This project demonstrates how historical monitoring data can be synthesized and used for future planning and decision making, thereby closing the management feedback cycle. This study linked disparate datasets, collected for a variety of purposes and across multiple temporal and spatial scales, in order to assess and quantify current habitat conditions. The results inform integrated resource management decision-making at Assateague Island National Seashore (Maryland and Virginia, USA) by using ecological reference conditions to identify monitoring needs, areas of high vulnerability, and areas with potential for improved management. The approach also provides a framework that can be applied in the future to assess the effectiveness of these management decisions on the condition of island habitats, and is a replicable demonstration of incorporating diverse monitoring datasets into an adaptive management cycle

Submersed Aquatic Vegetation in Chesapeake Bay: Sentinel Species in a Changing World

Chesapeake Bay has undergone profound changes since European settlement. Increases in human and livestock populations, associated changes in land use, increases in nutrient loadings, shoreline armoring, and depletion of fish stocks have altered the important habitats within the Bay. Submersed aquatic vegetation (SAV) is a critical foundational habitat and provides numerous benefits and services to society. In Chesapeake Bay, SAV species are also indicators of environmental change because of their sensitivity to water quality and shoreline development. As such, SAV has been deeply integrated into regional regulations and annual assessments of management outcomes, restoration efforts, the scientific literature, and popular media coverage. Even so, SAV in Chesapeake Bay faces many historical and emerging challenges. The future of Chesapeake Bay is indicated by and contingent on the success of SAV. Its persistence will require continued action, coupled with new practices, to promote a healthy and sustainable ecosystem

Evaluating nanoparticle localisation in glioblastoma multicellular tumour spheroids by surface enhanced Raman scattering

Glioblastoma multiforme (GBM) is a particularly aggressive and high-grade brain cancer, with poor prognosis and life expectancy, in urgent need of novel therapies. These severe outcomes are compounded by the difficulty in distinguishing between cancerous and non-cancerous tissues using conventional imaging techniques. Metallic nanoparticles (NPs) are advantageous due to their diverse optical and physical properties, such as their targeting and imaging potential. In this work, the uptake, distribution, and location of silica coated gold nanoparticles (AuNP-SHINs) within multicellular tumour spheroids (MTS) derived from U87-MG glioblastoma cells was investigated by surface enhanced Raman scattering (SERS) optical mapping. MTS are three-dimensional in vitro tumour mimics that represent a tumour in vivo much more closely than that of a two-dimensional cell culture. By using AuNP-SHIN nanotags, it is possible to readily functionalise the inner gold surface with a Raman reporter, and the outer silica surface with an antibody for tumour specific targeting. The nanotags were designed to target the biomarker tenascin-C overexpressed in U87-MG glioblastoma cells. Immunochemistry indicated that tenascin-C was upregulated within the core of the MTS, however limitations such as NP size, quiescence, and hypoxia, restricted the penetration of the nanotags to the core and they remained in the outer proliferating cells of the spheroids. Previous examples of MTS studies using SERS demonstrated the incubation of NPs on a 2D monolayer of cells, with the subsequent formation of the MTS from these pre-incubated cells. Here, we focus on the localisation of the NPs after incubation into pre-formed MTS to establish a better understanding of targeting and NP uptake. Therefore, this work highlights the importance for the investigation and translation of NP uptake into these 3D in vitro models

Long-term Annual Aerial Surveys of Submersed Aquatic Vegetation (SAV) Support Science, Management, and Restoration

Aerial surveys of coastal habitats can uniquely inform the science and management of shallow, coastal zones, and when repeated annually,theyrevealchangesthatareotherwisedifficulttoassess fromground-basedsurveys.Thispaperreviewstheutilityofalongterm(1984–present)annualaerialmonitoringprogramforsubmersedaquaticvegetation(SAV)inChesapeakeBay,itstidaltributaries, and nearby Atlantic coastal bays, USA. We present a series of applications that highlight the program’s importance in assessing anthropogenic impacts, gauging water quality status and trends, establishing and evaluating restoration goals, and understanding the impactofcommercialfishingpracticesonbenthichabitats.Theseexamplesdemonstratehowperiodicallyquantifyingcoverageofthis important foundational habitat answers basic research questions locally, as well as globally, and provides essential information to resource managers. New technologies are enabling more frequent and accurate aerial surveys at greater spatial resolution and lower cost. These advances will support efforts to extend the applications described here to similar issues in other areas