2,581 research outputs found
The Ubiquitin Specific Protease USP34 promotes ubiquitin signaling at DNA double-strand breaks
published_or_final_versio
Three-dimensional coherent X-ray diffraction imaging of a ceramic nanofoam: determination of structural deformation mechanisms
Ultra-low density polymers, metals, and ceramic nanofoams are valued for
their high strength-to-weight ratio, high surface area and insulating
properties ascribed to their structural geometry. We obtain the labrynthine
internal structure of a tantalum oxide nanofoam by X-ray diffractive imaging.
Finite element analysis from the structure reveals mechanical properties
consistent with bulk samples and with a diffusion limited cluster aggregation
model, while excess mass on the nodes discounts the dangling fragments
hypothesis of percolation theory.Comment: 8 pages, 5 figures, 30 reference
Modulation of Sn concentration in ZnO nanorod array: intensification on the conductivity and humidity sensing properties
Tin (Sn)-doped zinc oxide (ZnO) nanorod arrays (TZO) were synthesized onto aluminum-doped ZnO-coated glass substrate via a facile sonicated sol–gel immersion method for humidity sensor applications. These nanorod arrays were grown at different Sn concentrations ranging from 0.6 to 3 at.%. X-ray diffraction patterns showed that the deposited TZO arrays exhibited a wurtzite structure. The stress/strain condition of the ZnO film metamorphosed from tensile strain/compressive stress to compressive strain/tensile stress when the Sn concentrations increased. Results indicated that 1 at.% Sn doping of TZO, which has the lowest tensile stress of 0.14 GPa, generated the highest conductivity of 1.31 S cm− 1. In addition, 1 at.% Sn doping of TZO possessed superior sensitivity to a humidity of 3.36. These results revealed that the optimum performance of a humidity-sensing device can be obtained mainly by controlling the amount of extrinsic element in a ZnO film
Structural insight into SUMO chain recognition and manipulation by the ubiquitin ligase RNF4
The small ubiquitin-like modifier (SUMO) can form polymeric chains that are important signals in cellular processes such as meiosis, genome maintenance and stress response. The SUMO-targeted ubiquitin ligase RNF4 engages with SUMO chains on linked substrates and catalyses their ubiquitination, which targets substrates for proteasomal degradation. Here we use a segmental labelling approach combined with solution nuclear magnetic resonance (NMR) spectroscopy and biochemical characterization to reveal how RNF4 manipulates the conformation of the SUMO chain, thereby facilitating optimal delivery of the distal SUMO domain for ubiquitin transfer
Sculpting oscillators with light within a nonlinear quantum fluid
Seeing macroscopic quantum states directly remains an elusive goal. Particles
with boson symmetry can condense into such quantum fluids producing rich
physical phenomena as well as proven potential for interferometric devices
[1-10]. However direct imaging of such quantum states is only fleetingly
possible in high-vacuum ultracold atomic condensates, and not in
superconductors. Recent condensation of solid state polariton quasiparticles,
built from mixing semiconductor excitons with microcavity photons, offers
monolithic devices capable of supporting room temperature quantum states
[11-14] that exhibit superfluid behaviour [15,16]. Here we use microcavities on
a semiconductor chip supporting two-dimensional polariton condensates to
directly visualise the formation of a spontaneously oscillating quantum fluid.
This system is created on the fly by injecting polaritons at two or more
spatially-separated pump spots. Although oscillating at tuneable THz-scale
frequencies, a simple optical microscope can be used to directly image their
stable archetypal quantum oscillator wavefunctions in real space. The
self-repulsion of polaritons provides a solid state quasiparticle that is so
nonlinear as to modify its own potential. Interference in time and space
reveals the condensate wavepackets arise from non-equilibrium solitons. Control
of such polariton condensate wavepackets demonstrates great potential for
integrated semiconductor-based condensate devices.Comment: accepted in Nature Physic
Blow-up profile of rotating 2D focusing Bose gases
We consider the Gross-Pitaevskii equation describing an attractive Bose gas
trapped to a quasi 2D layer by means of a purely harmonic potential, and which
rotates at a fixed speed of rotation . First we study the behavior of
the ground state when the coupling constant approaches , the critical
strength of the cubic nonlinearity for the focusing nonlinear Schr{\"o}dinger
equation. We prove that blow-up always happens at the center of the trap, with
the blow-up profile given by the Gagliardo-Nirenberg solution. In particular,
the blow-up scenario is independent of , to leading order. This
generalizes results obtained by Guo and Seiringer (Lett. Math. Phys., 2014,
vol. 104, p. 141--156) in the non-rotating case. In a second part we consider
the many-particle Hamiltonian for bosons, interacting with a potential
rescaled in the mean-field manner w\int\_{\mathbb{R}^2} w(x) dx = 1\beta < 1/2a\_N \to a\_*N \to \infty$
Vortices in polariton OPO superfluids
This chapter reviews the occurrence of quantised vortices in polariton
fluids, primarily when polaritons are driven in the optical parametric
oscillator (OPO) regime. We first review the OPO physics, together with both
its analytical and numerical modelling, the latter being necessary for the
description of finite size systems. Pattern formation is typical in systems
driven away from equilibrium. Similarly, we find that uniform OPO solutions can
be unstable to the spontaneous formation of quantised vortices. However,
metastable vortices can only be injected externally into an otherwise stable
symmetric state, and their persistence is due to the OPO superfluid properties.
We discuss how the currents charactering an OPO play a crucial role in the
occurrence and dynamics of both metastable and spontaneous vortices.Comment: 40 pages, 16 figure
A DNMT3B Alternatively Spliced Exon and Encoded Peptide Are Novel Biomarkers of Human Pluripotent Stem Cells
A major obstacle in human stem cell research is the limited number of reagents capable of distinguishing pluripotent stem cells from partially differentiated or incompletely reprogrammed derivatives. Although human embryonic stem cells (hESCs) and induced pluripotent stem cells (iPSCs) express numerous alternatively spliced transcripts, little attention has been directed at developing splice variant-encoded protein isoforms as reagents for stem cell research. In this study, several genes encoding proteins involved in important signaling pathways were screened to detect alternatively spliced transcripts that exhibited differential expression in pluripotent stem cells (PSCs) relative to spontaneously differentiated cells (SDCs). Transcripts containing the alternatively spliced exon 10 of the de novo DNA methyltransferase gene, DNMT3B, were identified that are expressed in PSCs. To demonstrate the utility and superiority of splice variant specific reagents for stem cell research, a peptide encoded by DNMT3B exon 10 was used to generate an antibody, SG1. The SG1 antibody detects a single DNMT3B protein isoform that is expressed only in PSCs but not in SDCs. The SG1 antibody is also demonstrably superior to other antibodies at distinguishing PSCs from SDCs in mixed cultures containing both pluripotent stem cells and partially differentiated derivatives. The tightly controlled down regulation of DNMT3B exon 10 containing transcripts (and exon 10 encoded peptide) upon spontaneous differentiation of PSCs suggests that this DNMT3B splice isoform is characteristic of the pluripotent state. Alternatively spliced exons, and the proteins they encode, represent a vast untapped reservoir of novel biomarkers that can be used to develop superior reagents for stem cell research and to gain further insight into mechanisms controlling stem cell pluripotency
Human papillomavirus in amniotic fluid
BACKGROUND: There is evidence to suggest that human papillomavirus (HPV) can cross the placenta resulting in in-utero transmission. The goal of this study was to determine if HPV can be detected in amniotic fluid from women with intact amniotic membranes. METHODS: Residual amniotic fluid and cultured cell pellets from amniocentesis performed for prenatal diagnosis were used. PGMY09/11 L1 consensus primers and GP5+/GP6+ primers were used in a nested polymerase chain reaction assay for HPV. RESULTS: There were 146 paired samples from 142 women representing 139 singleton pregnancies, 2 twin pregnancies, and 1 triplet pregnancy. The women were 78% Caucasian, 5% African American, 14% Asian, and 2% Hispanic. The average age was 35.2 years with a range of 23–55 years. All samples were β-globin positive. HPV was not detected in any of the paired samples. CONCLUSION: Given the age range, race, and ethnicity of the study population, one would anticipate some evidence of HPV if it could easily cross the placenta, but there was none
Transplantation of canine olfactory ensheathing cells producing chondroitinase ABC promotes chondroitin sulphate proteoglycan digestion and axonal sprouting following spinal cord injury
Olfactory ensheathing cell (OEC) transplantation is a promising strategy for treating spinal cord injury (SCI), as has been demonstrated in experimental SCI models and naturally occurring SCI in dogs. However, the presence of chondroitin sulphate proteoglycans within the extracellular matrix of the glial scar can inhibit efficient axonal repair and limit the therapeutic potential of OECs. Here we have used lentiviral vectors to genetically modify canine OECs to continuously deliver mammalian chondroitinase ABC at the lesion site in order to degrade the inhibitory chondroitin sulphate proteoglycans in a rodent model of spinal cord injury. We demonstrate that these chondroitinase producing canine OECs survived at 4 weeks following transplantation into the spinal cord lesion and effectively digested chondroitin sulphate proteoglycans at the site of injury. There was evidence of sprouting within the corticospinal tract rostral to the lesion and an increase in the number of corticospinal axons caudal to the lesion, suggestive of axonal regeneration. Our results indicate that delivery of the chondroitinase enzyme can be achieved with the genetically modified OECs to increase axon growth following SCI. The combination of these two promising approaches is a potential strategy for promoting neural regeneration following SCI in veterinary practice and human patients
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