Complete genome sequence of Torque teno indri virus 1, a novel anellovirus in blood from a free-living lemur

ABSTRACT We identified Torque teno indri virus 1 (TTIV1), the first anellovirus in a free-living lemur ( Indri indri ). The complete circular 2,572-nucleotide (nt) TTIV1 genome is distantly related to torque teno sus virus. Phylogenetic and sequence analyses support TTIV1 as a putative member of a new genus within the Anelloviridae family. </jats:p

Unnatural selection in Galapagos : the role of disease in Darwin’s Finches (Geospizinae)

Micro-evolutionary studies, such as those of Darwin’s finches (Geospizinae), have been used as indicators of rates of evolution under natural selection. Today however, such studies may be compromised by unnatural selection. Recently introduced infectious and parasitic agents in Galapagos may hamper our ability to monitor natural evolutionary change in endemic birds, by modifying such change. The opportunity to study natural selection in its iconic site may thus be lost, due to these and other forms of human environmental alteration, which may be replacing non-anthropogenic factors as the principal driver of evolution. To ensure that natural selection continues to shape the biota of Galapagos, anthropogenic impacts including introduced diseases must be managed effectively

No Difference in Corticosterone Concentrations Between Missouri Three-Toed Box Turtles Living in an Urban and a Rural Site

Baseline health data for species of conservation concern are important for understanding threats to the long-term viability of populations. One indication of health is physiological stress among individuals. Corticosterone (CORT) is frequently used to quantify stress in free-living reptile populations, as high values may be associated with reduced fitness. Herein, we describe and validate methods for quantifying blood CORT levels in three-toed box turtles (Terrapene mexicana triunguis). We subsequently use this information to evaluate stress levels in 2 populations of free-living three-toed box turtles in Missouri, USA. To our knowledge, this is the first quantification of CORT levels in the three-toed box turtle. In 2012 we collected blood samples from 11 three-toed box turtles in human care at the Saint Louis Zoological Park (zoo), St. Louis, Missouri for assay validation, and from 2012 to 2016 we collected 220 samples from 144 free-living three-toed box turtles at 2 sites, 1 urban and 1 rural. In the zoo turtles, mean CORT concentration was 0.71 ± 0.10 ng/mL. Following a handling experiment, CORT concentration increased to 3.14 ± 0.72 ng/mL (P = 0.011). Mean CORT levels between free-living turtles at the urban and rural sites did not differ (urban = 0.54 ± 0.08 ng/mL, rural = 0.37 ± 0.02 ng/mL, F pr = 0.12). Sex did not influence CORT levels (F pr = 0.29). These results suggest that the turtles living in the urban environment did not experience chronic elevated glucocorticoid production and supports urban parks as potential habitat for box turtles

Species-specific transmission of novel picornaviruses in lemurs

The roles of host genetics versus exposure and contact frequency in driving cross-species transmission remain the subject of debate. Here, we used a multitaxon lemur collection at the Saint Louis Zoo in the United States as a model to gain insight into viral transmission in a setting of high interspecies contact. Lemurs are a diverse and understudied group of primates that are highly endangered. The speciation of lemurs, which are endemic to the island of Madagascar, occurred in geographic isolation apart from that of continental African primates. Although evidence of endogenized viruses in lemur genomes exists, no exogenous viruses of lemurs have been described to date. Here we identified two novel picornaviruses in fecal specimens of ring-tailed lemurs (Lemur catta) and black-and-white ruffed lemurs (Varecia variegata). We found that the viruses were transmitted in a species-specific manner (lesavirus 1 was detected only in ring-tailed lemurs, while lesavirus 2 was detected only in black-and-white ruffed lemurs). Longitudinal sampling over a 1-year interval demonstrated ongoing infection in the collection. This was supported by evidence of viral clearance in some animals and new infections in previously uninfected animals, including a set of newly born triplets that acquired the infection. While the two virus strains were found to be cocirculating in a mixed-species exhibit of ring-tailed lemurs, black-and-white ruffed lemurs, and black lemurs, there was no evidence of cross-species transmission. This suggests that despite high-intensity contact, host species barriers can prevent cross-species transmissions of these viruses. IMPORTANCE Up to 75% of emerging infectious diseases in humans today are the result of zoonotic transmission. However, a challenge in understanding transmission dynamics has been the limited models of cross-species transmission. Zoos provide a unique opportunity to explore parameters defining viral transmission. We demonstrated that ongoing virus transmission in a mixed lemur species exhibit was species specific. This suggests that despite high contact intensity, host species barriers contribute to protection from cross-species transmission of these viruses. While the combinations of species might differ, most zoological parks worldwide commonly feature mixed-species exhibits. Collectively, this report demonstrates a widely applicable approach toward understanding infectious disease transmission

Endogenization of a prosimian retrovirus during lemur evolution

Studies of viruses that coevolved with lemurs provide an opportunity to understand the basal traits of primate viruses and provide an evolutionary context for host-virus interactions. Germline integration of endogenous retroviruses (ERVs) are fossil evidence of past infections. Hence, characterization of novel ERVs provides insight into the ancient precursors of extant viruses and the evolutionary history of their hosts. Here, we report the discovery of a novel endogenous retrovirus present in the genome of a lemur, Coquerel\u27s sifaka

Gizzard contents of the Smooth-billed Ani Crotophaga ani in Santa Cruz, Galapagos Islands, Ecuador

The Smooth-billed Ani Crotophaga ani was introduced to the Galapagos archipelago in the 1960s, since when its population has grown significantly. We studied the dietary items in the gizzards of 56 anis sampled on the island of Santa Cruz. We confirmed that the diet of C. ani consists primarily of invertebrates and plant material, including native species and non-native invasives. The second most abundant seed in the anis’ diet was that of the highly invasive plant, Rubus niveus. Our findings suggest that C. ani poses a threat to the Galapagos ecosystem by dispersing seeds of non-native plants and by competing with other insectivorous species on the islands. Furthermore, the discovery of a Darwin’s Finch nestling in the gizzard of one C. ani establishes direct predation by this species on native birds

Sharing land with giants: Habitat preferences of Galapagos tortoises on farms

One of the most pressing dilemmas of our time is determining how to satisfy the demands of a growing human population while still conserving biodiversity. Worldwide, land modification to accommodate human resource needs has caused significant declines in wildlife populations. To help minimize biodiversity loss, we must support wildlife on human-dominated land, such as farms and urban areas, but our knowledge of how to do so is lacking. Agriculture is a major driver of land modification; but also has the potential to play a role in conserving biodiversity. To support critically endangered ecosystem engineers that use farms, such as giant Galapagos tortoises, we need to understand the characteristics encouraging or hindering them. To quantify tortoise habitat preferences, we assessed the relationship between tortoise density, habitat structure, and land-use type, by recording tortoise density on farms on Santa Cruz Island, Galapagos, over two years. Tortoise density was lowest in abandoned farmland and highest in tourist areas and was most strongly positively correlated with abundant ground cover, short vegetation, and few shrubs. The habitat features favoured by tortoises could potentially be manipulated to help support tortoise conservation on farms. Measuring wildlife preferences in human-dominated areas is an important step towards balancing biodiversity conservation and human-enterprise

The sero-epidemiology of Coxiella burnetii (Q fever) across livestock species and herding contexts in Laikipia County, Kenya

Coxiella burnetii, the causative agent of Query fever (Q fever), is among the most highly infectious zoonotic pathogens transmitted among livestock, with chronic effects challenging to veterinary and medical detection and care systems. Transmission among domestic livestock species can vary regionally due to herd management practices that determine which livestock species are raised, whether or not livestock are in contact with wildlife, and the susceptibility of these livestock to infection. To explore how different livestock management practices are associated with the risk of infection in multispecies environments, we carried out a comparative study of three types of herd management systems in the central Kenyan county of Laikipia: agro‐commercial, mixed conservancy/commercial, and smallholder ranches. We tested C. burnetii antibody seroprevalence in four common livestock species. Across all management types, the highest seroprevalence was in camels (20%), followed by goats (18%), sheep (13%), and cattle (6%). We observed a lower odds of testing seropositive for young compared to adult animals (adjusted OR = 0.44 [95% CI 0.24, 0.76]), and for males compared to females (adjusted OR = 0.52 [95% CI 0.33, 0.80]). Animals from mixed conservancy/commercial and smallholder operations had a higher odds of testing seropositive compared to animals from agro‐commercial ranches (adjusted OR = 5.17 [95% CI 2.71, 10.44] and adjusted OR = 2.21 [95% CI 1.17, 4.43] respectively). These data suggest that herd management practices might affect the transmission dynamics of C. burnetiiin arid African ecosystems like those seen in Kenya where several transmission modes are possible, risk of drought has promoted new livestock species such as camels, and multiple wildlife species may co‐occur with livestock on the landscape. Further longitudinal studies are needed to disentangle the mechanisms underlying these patterns, and further explore transmission patterns between wildlife, domestic animal, and human populations