Tracking cells in Life Cell Imaging videos using topological alignments

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A Time-Series Method for Automated Measurement of Changes in Mitotic and Interphase Duration from Time-Lapse Movies

Automated time-lapse microscopy can visualize proliferation of large numbers of individual cells, enabling accurate measurement of the frequency of cell division and the duration of interphase and mitosis. However, extraction of quantitative information by manual inspection of time-lapse movies is too time-consuming to be useful for analysis of large experiments.Here we present an automated time-series approach that can measure changes in the duration of mitosis and interphase in individual cells expressing fluorescent histone 2B. The approach requires analysis of only 2 features, nuclear area and average intensity. Compared to supervised learning approaches, this method reduces processing time and does not require generation of training data sets. We demonstrate that this method is as sensitive as manual analysis in identifying small changes in interphase or mitotic duration induced by drug or siRNA treatment.This approach should facilitate automated analysis of high-throughput time-lapse data sets to identify small molecules or gene products that influence timing of cell division

Transfusion-transmitted infections

Although the risk of transfusion-transmitted infections today is lower than ever, the supply of safe blood products remains subject to contamination with known and yet to be identified human pathogens. Only continuous improvement and implementation of donor selection, sensitive screening tests and effective inactivation procedures can ensure the elimination, or at least reduction, of the risk of acquiring transfusion transmitted infections. In addition, ongoing education and up-to-date information regarding infectious agents that are potentially transmitted via blood components is necessary to promote the reporting of adverse events, an important component of transfusion transmitted disease surveillance. Thus, the collaboration of all parties involved in transfusion medicine, including national haemovigilance systems, is crucial for protecting a secure blood product supply from known and emerging blood-borne pathogens

Natural history of Crohn's disease in elderly patients diagnosed over the age of 70 years: a population-based study

International audienc

Combined segmentation and tracking of neural stem-cells

In this paper we analyze neural stem/progenitor cells in an time-lapse image sequence. By using information about the previous positions of the cells, we are able to make a. better selection of possible cells out of a collection of blob-like objects. As a blob detector we use Laplacian of Gaussian (LoG) filters at multiple scales, and the cell contours of the selected cells are segmented using dynamic programming. After the segmentation process the cells are tracked in the sequence using a. combined nearest-neighbor and correlation matching technique. An evaluation of the system show that 95% of the cells were correctly segmented and tracked between consecutive frames

Six-month outcomes of teduglutide treatment in adult patients with short bowel syndrome with chronic intestinal failure A real-world French observational cohort study

International audienceBackground & aims - Teduglutide, a GLP-2-analog, has proven effective in two placebo-controlled studies in reducing parenteral support (PS) in patients with short bowel syndrome-associated intestinal failure (SBS-IF) after 24 weeks. The aim of this study was to describe in a real-life situation the effects of teduglutide treatment and their predictive factors. Methods - We included 54 consecutive SBS-IF patients treated with teduglutide in France for at least 6 months from 10 expert centers. Small bowel length was 62 ± 6 cm and 65% had colon in continuity. PS was 4.4 ±0 .2 infusions per week, started 9.8 ± 1.2 years before. Response (PS reduction ≥ 20%) and PS discontinuation rates were assessed at week 24. Adjusted p values of factors associated with response and weaning were calculated using a multivariate logistic regression model. Results - At week 24, 85% of patients were responders and 24% had been weaned off PS, with a 51% reduction of PS needs and 1.5 ± 0.2 days off PS per week. Response to teduglutide was influenced by a higher baseline oral intake (p = 0.02). Weaning off PS was influenced by the presence of colon (p = 0.04), a lower PS volume (p = 0.03) and a higher oral intake (p = 0.01). There were no differences based on age, bowel length or SBS-IF causes. Conclusions - Our study confirms the effectiveness of teduglutide in reducing PS needs in SBS-IF patients. We associated reduced parenteral support volume with baseline parenteral volume support, bowel anatomy, and oral intake. These findings underline the role of nutritional optimization when starting the treatment

Automatic Segmentation of Unstained Living Cells in Bright-Field Microscope Images

Tscherepanow M, Zöllner F, Hillebrand M, Kummert F. Automatic Segmentation of Unstained Living Cells in Bright-Field Microscope Images. In: Perner P, Salvetti O, eds. Proceedings of the International Conference on Mass-Data Analysis of Images and Signals (MDA). Berlin: Springer; 2008: 158-172.The automatic subcellular localisation of proteins in living cells is a critical step in determining their function. The evaluation of fluorescence images constitutes a common method of localising these proteins. For this, additional knowledge about the position of the considered cells within an image is required. In an automated system, it is advantageous to recognise these cells in bright-field microscope images taken in parallel with the regarded fluorescence micrographs. Unfortunately, currently available cell recognition methods are only of limited use within the context of protein localisation, since they frequently require microscopy techniques that enable images of higher contrast (e.g. phase contrast microscopy or additional dyes) or can only be employed with too low magnifications. Therefore, this article introduces a novel approach to the robust automatic recognition of unstained living cells in bright-field microscope images. Here, the focus is on the automatic segmentation of cells

Incidence and Phenotype at Diagnosis of Very-early-onset Compared with Later-onset Paediatric Inflammatory Bowel Disease: A Population-based Study [1988-2011].

International audienceVery-early-onset inflammatory bowel disease [VEO-IBD] is a form of IBD that is distinct from that of children with an older onset. We compared changes over time in the incidence and phenotype at diagnosis between two groups according to age at IBD diagnosis: VEO-IBD diagnosed before the age of 6 years, and early-onset IBD [EO-IBD] diagnosed between 6 and 16 years of age