SWEEPFINDER2: Increased sensitivity, robustness, and flexibility

SweepFinder is a popular program that implements a powerful likelihood-based method for detecting recent positive selection, or selective sweeps. Here, we present SweepFinder2, an extension of SweepFinder with increased sensitivity and robustness to the confounding effects of mutation rate variation and background selection, as well as increased flexibility that enables the user to examine genomic regions in greater detail and to specify a fixed distance between test sites. Moreover, SweepFinder2 enables the use of invariant sites for sweep detection, increasing both its power and precision relative to SweepFinder

Deaths from Cysticercosis, United States

Most deaths occur among Latino immigrants; US-born persons are affected to a lesser extent

Ternary cluster decay within the liquid drop model

Longitudinal ternary and binary fission barriers of $^{36}$Ar, $^{56}$Ni and $^{252}$Cf nuclei have been determined within a rotational liquid drop model taking into account the nuclear proximity energy. For the light nuclei the heights of the ternary fission barriers become competitive with the binary ones at high angular momenta since the maximum lies at an outer position and has a much higher moment of inertia.Comment: Talk presented at the 9th International Conference on Clustering Aspects of Nuclear Structure and Dynamics (CLUSTERS'07

Optical extinction, refractive index, and multiple scattering for suspensions of interacting colloidal particles

We provide a general microscopic theory of the scattering cross-section and of the refractive index for a system of interacting colloidal particles, exact at second order in the molecular polarizabilities. In particular: a) we show that the structural features of the suspension are encoded into the forward scattered field by multiple scattering effects, whose contribution is essential for the so-called "optical theorem" to hold in the presence of interactions; b) we investigate the role of radiation reaction on light extinction; c) we discuss our results in the framework of effective medium theories, presenting a general result for the effective refractive index valid, whatever the structural properties of the suspension, in the limit of particles much larger than the wavelength; d) by discussing strongly-interacting suspensions, we unravel subtle anomalous dispersion effects for the suspension refractive index.Comment: Submitted to Journal of Chemical Physics 37 pages, 4 figure

Relationship between dielectric properties and critical behavior of the electric birefringence in binary liquid mixtures

We present experimental results on the critical exponent ψEKE describing the divergence of the Kerr constant of binary liquid mixtures near the critical consolute point. We show that the measured value of ψEKE agrees with the theoretical prediction only if the measurement is performed with a mixture of two liquids presenting a small mismatch in the dielectric constant, and that the measured ψEKE grows as the dielectric constant mismatch increases. Such findings are consistent with a recent model which assumes that the elongation of critical fluctations along the direction of the electric field can become so strong that fluctuations in the direction perpendicular to the electric field may cross over from Ising to mean-field behavior

Turning light into a liquid via atomic coherence

We study a four level atomic system with electromagnetically induced transparency with giant $\chi^{(3)}$ and $\chi^{(5)}$ susceptibilities of opposite signs. This system would allow to obtain multidimensional solitons and light condensates with surface tension properties analogous to those of usual liquids

Polyelectrolyte Persistence Length: Attractive Effect of Counterion Correlations and Fluctuations

The persistence length of a single, strongly charged, stiff polyelectrolyte chain is investigated theoretically. Path integral formulation is used to obtain the effective electrostatic interaction between the monomers. We find significant deviations from the classical Odijk, Skolnick and Fixman (OSF) result. An induced attraction between monomers is due to thermal fluctuations and correlations between bound counterions. The electrostatic persistence length is found to be smaller than the OSF value and indicates a possible mechanical instability (collapse) for highly charged polyelectrolytes with multivalent counterions. In addition, we calculate the amount of condensed counterions on a slightly bent polyelectrolyte. More counterions are found to be adsorbed as compared to the Manning condensation on a cylinder.Comment: 5 pages, 1 ps figur

Frequency dependence of the dielectric and electro-optic response in suspensions of charged rod-like colloidal particles

We have performed an experimental investigation on the electrokinetic properties of charged rod-like fluorinated latex colloids. Systematic measurements of electrophoretic mobility, dielectric constant and electric birefringence have been performed as a function of the concentration of added nonionic surfactant and salt. In the investigated range of parameters, the zeta potential is a strongly decreasing function of the concentration of nonionic surfactant, while it is basically independent from ionic strength. We have obtained the frequency dependence of dielectric constant and Kerr constant as a function of zeta-potential and ionic strength. We observe the transition from a low frequency behavior, where both the dielectric constant and the Kerr constant are enhanced by the presence of the double layer, to a high frequency behavior, where both quantities take the value expected for unchanged particles in an insulating medium. The shape of the frequency dispersion of the Kerr constant coincides with that of the dielectric constant, but the cut-off frequencies are the same only when the zeta-potential of the particles is low

Quantum computation with linear optics

We present a constructive method to translate small quantum circuits into their optical analogues, using linear components of present-day quantum optics technology only. These optical circuits perform precisely the computation that the quantum circuits are designed for, and can thus be used to test the performance of quantum algorithms. The method relies on the representation of several quantum bits by a single photon, and on the implementation of universal quantum gates using simple optical components (beam splitters, phase shifters, etc.). The optical implementation of Brassard et al.'s teleportation circuit, a non-trivial 3-bit quantum computation, is presented as an illustration.Comment: LaTeX with llncs.cls, 11 pages with 5 postscript figures, Proc. of 1st NASA Workshop on Quantum Computation and Quantum Communication (QCQC 98

A geometrical setting for the classification of multilayers

We elaborate on the consequences of the factorization of the transfer matrix of any lossless multilayer in terms of three basic matrices of simple interpretation. By considering the bilinear transformation that this transfer matrix induces in the complex plane, we introduce the concept of multilayer transfer function and study its properties in the unit disk. In this geometrical setting, our factorization translates into three actions that can be viewed as the basic pieces for understanding the multilayer behavior. Additionally, we introduce a simple trace criterion that allows us to classify multilayers in three types with properties closely related to one (and only one) of these three basic matrices. We apply this approach to analyze some practical examples that are representative of these types of matrices.Comment: 8 pages, 5 figures. To be published in J. Opt. Soc. Am.